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Dataset results
19 results for “Introduction to R”
Introduction to Ancient Metagenomics Textbook (Edition 2025): Introduction to R and the Tidyverse
<p>Data and conda software environment file for the chapter 'Introduction to R and the Tidyverse' of the SPAAM Community's textbook: Introduction to Ancient Metagenomics (https://www.spaam-community.org/intro-to-ancient-metagenomics-book).</p>
Course Materials for Environmental Data Science in R: Introduction to Data Integration and Machine Learning (ENV 730)
In today's world, understanding environmental data and making informed decisions based on it is crucial for addressing complex environmental challenges. Yale School of the Environment's Environmental Data Science in R: Introduction to Data Integration and Machine Learning (ENV 730) course serves as an introduction to the integration of environmental data using R programming language, coupled with machine learning techniques. This dataset contains a zip file with all the data files used in this course, along with a README that has the metadata for those files.
Data for Introduction to R for Biologists
<p>This dataset is supplementary to the workshop designed for the MSc Students in UCL Cancer Institute to introduce R (statistical-) programming language.</p>
SPAAM Summer School 2022: Introduction to Ancient Metagenomics - 3b1 Introduction to R and the Tidyverse
<p>Teaching data for practical session: "3b1 Introduction to R and the Tidyverse" of the 2022 SPAAM Summer School: Introduction to Ancient Metagenomics (Aug. 1-5 2022).</p> <p>See: <a href="https://spaam-community.github.io/wss-summer-school/#/2022/">https://spaam-community.github.io/wss-summer-school/#/2022/</a> or <a href="https://doi.org/10.5281/zenodo.6976711">https://doi.org/10.5281/zenodo.6976711</a> for slides.</p> <p>Once downloaded, run:</p> <pre><code>tar xvfz <session>.tar.gz</code></pre> <p> to decompress the data directory for the session.</p>
Data and R-Scripts: Predicting hotspots for invasive species introduction in Europe
<p>The .rar file comprises all data and R-scripts needed to replicate our study entitled "<em>Predicting Hotspots for Invasive Species Introduction in Europe</em>" published in <em>Environmental Research Letters</em>. The folder <em>data </em>holds all input data as well as the final datasets used for training the algorithms, in the subfolder <em>A_ML_ready_datasets</em>. The folder <em>descriptives </em>provides tables with descriptive statistics<em>. </em>The folder<em> figures </em>provides files for all figures displayed in the manuscript and the supplementary material as well as visualizations of descriptive statistics for all background approaches in the corresponding subfolders. The folder <em>results </em>holds all generated results. The folder <em>scripts</em> provides all R-scripts used for intermediate computations. The <em>master </em>and <em>master_results</em> scripts coordinate all computations and the generation of results, respectively.</p> <p>Notably, various spatial layers were used to extract point-values of features which subsequently were used to estimate the models and generate the predictions. Here, we only upload the extracted point-values in the <em>data </em>folder. If you are interested in using any of the raw spatial layers, please refer to section 2.1.3. of our publication to find the corresponding references. Alternatively, feel free to reach out to me and I will direct you to the original databases and/or send you the raw spatial layers.</p>
The introduction of R
Open the record for dataset details and reuse information.
Subspecies and Distribution. R.t.timorensisdeBlainville,1822—TimorI. R.t.djongaVanBemmel,1949-MunaandButonIs. R.t.flovesiensisHeude,1897—Flores1. R.t.macassaricaHeude,1896—Sulawesi. R.t.moluccensisQuoy&Gaimard,1830—MoluccanIs. R.t.renschiSody,1932—Bali. R. t. russa Muller & Schlegel, 1845 — Java. Possibly it is native only to Java and Bali islands, introduced into Lombok, Flores, Sumbawa, Sumba, Timor, Sulawesi, and Moluccan Islands in ancient times. It was introduced during the last centuries in many locations, including New Guinea, Aru Islands, New Britain Is, Australia, New Zealand, New Caledonia, Mauritius, and Comoro Is. The map represents the native range and the oldest introductions. in Cervidae
Subspecies and Distribution. R.t.timorensisdeBlainville,1822—TimorI. R.t.djongaVanBemmel,1949-MunaandButonIs. R.t.flovesiensisHeude,1897—Flores1. R.t.macassaricaHeude,1896—Sulawesi. R.t.moluccensisQuoy&Gaimard,1830—MoluccanIs. R.t.renschiSody,1932—Bali. R. t. russa Muller & Schlegel, 1845 — Java. Possibly it is native only to Java and Bali islands, introduced into Lombok, Flores, Sumbawa, Sumba, Timor, Sulawesi, and Moluccan Islands in ancient times. It was introduced during the last centuries in many locations, including New Guinea, Aru Islands, New Britain Is, Australia, New Zealand, New Caledonia, Mauritius, and Comoro Is. The map represents the native range and the oldest introductions.
Supplementary material 5 from: Cabezas MP, Ros M, Santos AM, Martínez-Laiz G, Xavier R, Montelli L, Hoffman R, Fersi A, Dauvin JC, Guerra-García JM (2019) Unravelling the origin and introduction pattern of the tropical species Paracaprella pusilla Mayer, 1890 (Crustacea, Amphipoda, Caprellidae) in temperate European waters: first molecular insights from a spatial and temporal perspective. NeoBiota 47: 43-80. https://doi.org/10.3897/neobiota.47.32408
: Explanation note: A Phylogenetic tree of nuclear 28S rRNA. Unfortunately, this gene could not be amplified in P.tenuis species. In P.pusilla, only two haplotypes were detected, differing only by the presence of an indel. B Phylogenetic tree of nuclear ribosomal internal transcribed spacer (ITS). No variation was observed among P.pusilla sequences. Trees were rooted with Caprelladanilevskii and Caprellaliparotensis. Values at the nodes correspond to ML bootstrap support and Bayesian posterior probabilities, respectively.
A Study to Evaluate the Introduction of New Staffing Models in Intensive Care: a Realist Evaluation (SEISMIC-R)
ClinicalTrials.gov study NCT05917574. IPD Sharing: NO. Countries: 1. Publications: 1.
Supplementary material 1 from: Leonhardt F, Jimenez-Bolaño JD, Ernst R (2019) Whistling invaders: Status and distribution of Johnstone's Whistling frog (Eleutherodactylus johnstonei Barbour, 1914), 25 years after its introduction to Colombia. NeoBiota 45: 39-54. https://doi.org/10.3897/neobiota.45.33515
: Data type: occurence
Supplementary material 3 from: Cabezas MP, Ros M, Santos AM, Martínez-Laiz G, Xavier R, Montelli L, Hoffman R, Fersi A, Dauvin JC, Guerra-García JM (2019) Unravelling the origin and introduction pattern of the tropical species Paracaprella pusilla Mayer, 1890 (Crustacea, Amphipoda, Caprellidae) in temperate European waters: first molecular insights from a spatial and temporal perspective. NeoBiota 47: 43-80. https://doi.org/10.3897/neobiota.47.32408
: Data type: molecular data
Supplementary material 4 from: Cabezas MP, Ros M, Santos AM, Martínez-Laiz G, Xavier R, Montelli L, Hoffman R, Fersi A, Dauvin JC, Guerra-García JM (2019) Unravelling the origin and introduction pattern of the tropical species Paracaprella pusilla Mayer, 1890 (Crustacea, Amphipoda, Caprellidae) in temperate European waters: first molecular insights from a spatial and temporal perspective. NeoBiota 47: 43-80. https://doi.org/10.3897/neobiota.47.32408
: Data type: molecular data
Supplementary material 1 from: Cabezas MP, Ros M, Santos AM, Martínez-Laiz G, Xavier R, Montelli L, Hoffman R, Fersi A, Dauvin JC, Guerra-García JM (2019) Unravelling the origin and introduction pattern of the tropical species Paracaprella pusilla Mayer, 1890 (Crustacea, Amphipoda, Caprellidae) in temperate European waters: first molecular insights from a spatial and temporal perspective. NeoBiota 47: 43-80. https://doi.org/10.3897/neobiota.47.32408
: Data type: molecular data
Supplementary material 2 from: Cabezas MP, Ros M, Santos AM, Martínez-Laiz G, Xavier R, Montelli L, Hoffman R, Fersi A, Dauvin JC, Guerra-García JM (2019) Unravelling the origin and introduction pattern of the tropical species Paracaprella pusilla Mayer, 1890 (Crustacea, Amphipoda, Caprellidae) in temperate European waters: first molecular insights from a spatial and temporal perspective. NeoBiota 47: 43-80. https://doi.org/10.3897/neobiota.47.32408
: Data type: phylogenetic tree
Supplementary material 4 from: Migliorini D, Auger-Rozenberg M-A, Battisti A, Brockerhoff E, Brockerhoff E, Eschen R, Fan J-t, Jactel H, Orazio C, Paap T, Prospero S, Ren L, Kenis M, Roques A, Santini A (2023) Towards a global sentinel plants research strategy to prevent new introductions of non-native pests and pathogens in forests. The experience of HOMED. Research Ideas and Outcomes 9: e96744. https://doi.org/10.3897/rio.9.e96744
File 4
Supplementary material 3 from: Migliorini D, Auger-Rozenberg M-A, Battisti A, Brockerhoff E, Brockerhoff E, Eschen R, Fan J-t, Jactel H, Orazio C, Paap T, Prospero S, Ren L, Kenis M, Roques A, Santini A (2023) Towards a global sentinel plants research strategy to prevent new introductions of non-native pests and pathogens in forests. The experience of HOMED. Research Ideas and Outcomes 9: e96744. https://doi.org/10.3897/rio.9.e96744
File 3
Supplementary material 2 from: Migliorini D, Auger-Rozenberg M-A, Battisti A, Brockerhoff E, Brockerhoff E, Eschen R, Fan J-t, Jactel H, Orazio C, Paap T, Prospero S, Ren L, Kenis M, Roques A, Santini A (2023) Towards a global sentinel plants research strategy to prevent new introductions of non-native pests and pathogens in forests. The experience of HOMED. Research Ideas and Outcomes 9: e96744. https://doi.org/10.3897/rio.9.e96744
File 2
Supplementary material 1 from: Migliorini D, Auger-Rozenberg M-A, Battisti A, Brockerhoff E, Brockerhoff E, Eschen R, Fan J-t, Jactel H, Orazio C, Paap T, Prospero S, Ren L, Kenis M, Roques A, Santini A (2023) Towards a global sentinel plants research strategy to prevent new introductions of non-native pests and pathogens in forests. The experience of HOMED. Research Ideas and Outcomes 9: e96744. https://doi.org/10.3897/rio.9.e96744
File 1
Data and R scripts for: "Effect of introduction pathways on the invasion success of non-native plants along environmental gradients"
<p>Data and scripts that replicate the results for the publication: Marc Riera, Joan Pino, Llorenç Sáez, Pere Aymerich, Yolanda Melero (under review) Effect of introduction pathways on the invasion success of non-native plants along environmental gradients<br>The content of the files is described in a RedMe.txt file at the root directory, and in the main text of the manuscript.<br>Code developed and provided by Marc Riera. Contact: m.riera@creaf.uab.cat</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.