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Data from: Beyond population size: Whole-genome data reveal bottleneck legacies in the peninsular Italian wolf
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Positive Emotion Dispositions and Emotion Regulation in the Italian Population
<p>Dataset of the Dispositional Positive Emotion Scale in the Italian population</p>
Data from: A population genomics insight by 2b-RAD reveals populations' uniqueness along the Italian coastline in Leptopsammia pruvoti (Scleractinia, Dendrophylliidae).
Aim: Marine bioconstructions such as coralligenous formations are hot spot of biodiversity and play a relevant ecological role in the preservation of biodiversity by providing carbon regulation, protection and nursery areas for several marine species. For this reason, the European Union Habitat Directive included them among priority habitats to be preserved. Despite their ecological role is well-established, connectivity patterns are still poorly investigated, representing a limit in conservation planning. The present study pioneers a novel approach for the analysis of connectivity in marine bioconstructor species, which often lack suitable genetic markers, by taking advantage of next generation sequencing techniques. We assess the geographical patterns of genomic variation of the sunset cup coral Leptopsammia pruvoti Lacaze-Duthiers, 1897, an ahermatypic, non-zooxanthellate and solitary scleractinian coral species common in coralligenous habitats and distributed across the Mediterranean Sea. Location: The Italian coastline (Western and Central Mediterranean). Methods: We applied the restriction site associated 2b-RAD approach to genotype over 1,000 high quality and filtered Single Nucleotide Polymorphisms in 10 population samples. Results: The results revealed the existence of a strongly supported genetic structure, with highly significant pairwise FST values between all the population samples, including those collected about 5 kilometers apart from each other. Moreover, genomic data indicates that the strongest barriers to gene flow are between the western (Ligurian-Tyrrhenian Sea) and the eastern side (Adriatic Sea) of the Italian peninsula. Main conclusions: The strong differentiation found in L. pruvoti, is similar to that found in other species of marine bioconstructors investigated in this area, but it strongly contrasts with the small differences found in many fish and invertebrates at the same geographic scale. All in one, our results highlight the importance of assessing connectivity in species belonging to coralligenous habitats as, due to their limited dispersal ability, they might require specific spatial conservation measures.
FIGURE 2 in Genista anglica s.l. (Fabaceae): genetic similarities between Iberian and Italian populations
FIGURE 2. Maximum clade credibility (MCC) tree resulting from BEAST phylogenetic analysis (20,000,000 generations) based on plastid (trnL-F) sequences data of Genista anglica group from Fernández Prieto et al. (2016) and new sequences. Support values are displayed on tree branches as posterior probability. Only the new samples codes are shown in the tree rapresentation. A TCS haplotype network, constructed with the same samples of ingroup of the phylogenetic tree is represented. Samples of each clade of the tree are represented with the same color in the haplotype network and the G. silana and G. brutia samples are indicated in the tree by circles and triangles with different lines patrons respectively, as in the corresponding circles of the haplotype network.
FIGURE 1 in Genista anglica s.l. (Fabaceae): genetic similarities between Iberian and Italian populations
FIGURE 1. Distribution map of populations of Genista anglica, G. silana and G. brutia analysed in this study. Black triangles correspond to populations studied in Fernández Prieto et al. (2016). White circles represent the new populations analysed in this study.
FIGURE 3 in Genista anglica s.l. (Fabaceae): genetic similarities between Iberian and Italian populations
FIGURE 3. Distribution of trnL-F haplotypes found in the Genista anglica, G. brutia and G. silana samples of phylogenetic group E. Black triangles correspond with populations studied in Fernández Prieto et al. (2016). Small white circles correspond to the new populations analysed in this study. Haplotype network is represented (below), the diameter of circles represents the number of samples that is shown by each haplotype. The colours of circles are the same represented in the maps for each haplotype.
Subspecies and Distribution. S. s. scrofa Linnaeus, 1758 — W Europe, from Denmark, Germany, Poland, and Czech Republic to N Italy and N Iberian Peninsula; possibly also Albania. The taxonomic status of animals in Austria, Switzerland, Slovenia, and Slovakia is unclear but presumably these populations are included in scrofa, as are the populations of Sweden, Finland, and the Baltic states. However, restocking of once depleted populations, for example in Italy, has likely involved the introduction and mixing of this subspecies with other subspecies, such as attila. S. s. affinis Gray, 1847 — S India and Sri Lanka. S. s. algirus Loche, 1867 — Tunisia, Algeria, and Morocco, on the coastal side of the mountains or in the low montane areas. S. s. attila Thomas, 1912 — Hungary, Ukraine, C & S Belarus, Romania, Moldova, and S Russia towards the N flank of the Caucasus, but not including the Transcaucasian countries of Georgia, Armenia, and Azerbaijan. The range possibly extends as far S as the Mesopotamian Delta in Iraq, in which case it would likely include W & SW Iran, and possibly E Turkey and Syria, where it borders with lybicus. Such a range could not be easily reconciled with a statement by Groves that "the difference between pigs from N and S of the Caucasus is quite striking; Transcaucasian boars are certainly not attila." This subspecies may also extend into C Asia and include Kazakhstan, Uzbekistan, and Turkmenistan, but no data exist to support this. S. s. baeticus Thomas, 1912 — originally described from Coto Donana, S Spain, and later merged with meridionalis; also S Portugal. Unless evidence is found that these Italian and Iberian populations are the relics of a much larger formerly contiguous range, this subspecies should be kept as distinct. S. s. coreanus Heude, 1897 — Korean Peninsula. S. s. eristatus Wagner, 1839 — Himalayas S to C India and E to Indochina (N of the Kra Isthmus). S. s. davidi Groves, 1981 — the arid zone from E Iran to Gujarat, including Pakistan and NW India, and perhaps N to Tajikistan. S. s. leucomystax Temminck, 1842 — main Is ofJapan (Honshu, Shikoku, Kyushu, Nakadori, Hiburijima, Tojima, Kushima, and other smaller Is). S. s. lybicus Gray, 1868 — Bulgaria, Greece, Turkey, Syria, Jordan, Israel, Palestine, in the past also in Lybia, and Egypt. The former Yugoslavia was included in its range, which would suggest that now Slovenia, Serbia, Croatia, Bosnia and Herzegovina, Montenegro, and Kosovo are within the range of this subspecies, although the exact boundaries are unclear. Pigs from Albania have been assigned to S. s. scrofa. S. s. majori De Beaux & Festa, 1927 — C & S Italian Peninsula. S. s. menidionalis Forsyth Major, 1882 — Corsica and Sardinia, with the proviso that the two populations are very likely to be introduced or feral. S. s. moupinensis Milne-Edwards, 1871 — China, S to Vietnam and W to Sichuan. S. s. nigripes Blanford, 1875 — the flanks of the Tianshan mountains in Kyrgyzstan and NW China (Xinjiang). An animal photographed in NE Iran (Golestan) looked like this subspecies. S. s. nukiuanus Kuroda, 1924 — Iriomote, Ishigaki, Okinawa, Tokunoshima, Amamioshima, and Kakerome Is in the Ryukyu chain in extreme S Japan, though some of these populations have hybridized with introduced domesticates. S. s. sibiricus Staffe, 1922 — Mongolia and Transbaikal (S & E of Lake Baikal). S. s. tawvanus Swinhoe, 1863 — Taiwan. S. s. ussuricus Heude, 1888 — far E Russia and the Manchurian region (China). Korean populations were previously included in this subspecies, but based on new evidence, the Korean taxon seems more similar to moupinensis. S. s. vittatus Boie, 1828 — Malay Peninsula, S of the Isthmus of Kra, the offshore islands of Terutai and Langkawi, Sumatra, Riau Archipelago, Java, Bali, and a range of smaller islands around these, including Babi, Bakong, Batam, Bawean, Bengkalis, Bintan, Bulan, Bunguran, Cuyo, Deli, Durian, Enggano, Galang, Jambongan, Karimon (Riau Is), Kundur, Lagong, Laut, Lingga, Lingung, Mapor, Moro Kecil, North Pagai, Nias, Panaitan, Payong, Penang, Pinie, Rupat, Siantan, Siberut, Simeulue, Singkep, Sugi, Sugi Bawa, Telibon, Tinggi, Tuangku, and the Tambelan Is. This species was originally present from the British Is in the extreme W, through Eurasia from S Scandinavia to S Siberia, extending as far E as Korea and Japan, and SE into some of the Sunda Is and Taiwan. In the S the species ranged along the Nile Valley to Khartoum, and N of the Sahara in Africa, more orless following the continental coasts of S, E, and SE Asia. Within this range it was absent only from extremely dry deserts, e.g. the driest regions of Mongolia and in China W of Sichuan; and alpine zones, such as the high altitudes of Pamir and Tien Shan. In recent centuries, the range of S. scrofa has changed dramatically because of hunting and changes in available habitat. The species disappeared from the British Is in the 17" century, from Denmark in the 19" century, and was greatly reduced in range and numbers in the 20" century from areas as distant as Tunisia, Sudan, Germany, and Russia. Following these severe declines, there were some slight population recoveries in Russia, Italy, Spain, and Germany in the mid-20™ century, and natural and assisted range expansions in Denmark and Sweden. The species has also been inadvertently reintroduced in various locations in the Great Britain via escapees of mixed origin from commercial farming enterprises. Ex-S. scrofa stocks also occur as introduced feral populations in various other parts of the world, including Australia, New Zealand, the eastern Malay Archipelago, and in North, Central, and South America. In all of these areas they are now generally recognized as a major pest. in Suidae
Subspecies and Distribution. S. s. scrofa Linnaeus, 1758 — W Europe, from Denmark, Germany, Poland, and Czech Republic to N Italy and N Iberian Peninsula; possibly also Albania. The taxonomic status of animals in Austria, Switzerland, Slovenia, and Slovakia is unclear but presumably these populations are included in scrofa, as are the populations of Sweden, Finland, and the Baltic states. However, restocking of once depleted populations, for example in Italy, has likely involved the introduction and mixing of this subspecies with other subspecies, such as attila. S. s. affinis Gray, 1847 — S India and Sri Lanka. S. s. algirus Loche, 1867 — Tunisia, Algeria, and Morocco, on the coastal side of the mountains or in the low montane areas. S. s. attila Thomas, 1912 — Hungary, Ukraine, C & S Belarus, Romania, Moldova, and S Russia towards the N flank of the Caucasus, but not including the Transcaucasian countries of Georgia, Armenia, and Azerbaijan. The range possibly extends as far S as the Mesopotamian Delta in Iraq, in which case it would likely include W & SW Iran, and possibly E Turkey and Syria, where it borders with lybicus. Such a range could not be easily reconciled with a statement by Groves that "the difference between pigs from N and S of the Caucasus is quite striking; Transcaucasian boars are certainly not attila." This subspecies may also extend into C Asia and include Kazakhstan, Uzbekistan, and Turkmenistan, but no data exist to support this. S. s. baeticus Thomas, 1912 — originally described from Coto Donana, S Spain, and later merged with meridionalis; also S Portugal. Unless evidence is found that these Italian and Iberian populations are the relics of a much larger formerly contiguous range, this subspecies should be kept as distinct. S. s. coreanus Heude, 1897 — Korean Peninsula. S. s. eristatus Wagner, 1839 — Himalayas S to C India and E to Indochina (N of the Kra Isthmus). S. s. davidi Groves, 1981 — the arid zone from E Iran to Gujarat, including Pakistan and NW India, and perhaps N to Tajikistan. S. s. leucomystax Temminck, 1842 — main Is ofJapan (Honshu, Shikoku, Kyushu, Nakadori, Hiburijima, Tojima, Kushima, and other smaller Is). S. s. lybicus Gray, 1868 — Bulgaria, Greece, Turkey, Syria, Jordan, Israel, Palestine, in the past also in Lybia, and Egypt. The former Yugoslavia was included in its range, which would suggest that now Slovenia, Serbia, Croatia, Bosnia and Herzegovina, Montenegro, and Kosovo are within the range of this subspecies, although the exact boundaries are unclear. Pigs from Albania have been assigned to S. s. scrofa. S. s. majori De Beaux & Festa, 1927 — C & S Italian Peninsula. S. s. menidionalis Forsyth Major, 1882 — Corsica and Sardinia, with the proviso that the two populations are very likely to be introduced or feral. S. s. moupinensis Milne-Edwards, 1871 — China, S to Vietnam and W to Sichuan. S. s. nigripes Blanford, 1875 — the flanks of the Tianshan mountains in Kyrgyzstan and NW China (Xinjiang). An animal photographed in NE Iran (Golestan) looked like this subspecies. S. s. nukiuanus Kuroda, 1924 — Iriomote, Ishigaki, Okinawa, Tokunoshima, Amamioshima, and Kakerome Is in the Ryukyu chain in extreme S Japan, though some of these populations have hybridized with introduced domesticates. S. s. sibiricus Staffe, 1922 — Mongolia and Transbaikal (S & E of Lake Baikal). S. s. tawvanus Swinhoe, 1863 — Taiwan. S. s. ussuricus Heude, 1888 — far E Russia and the Manchurian region (China). Korean populations were previously included in this subspecies, but based on new evidence, the Korean taxon seems more similar to moupinensis. S. s. vittatus Boie, 1828 — Malay Peninsula, S of the Isthmus of Kra, the offshore islands of Terutai and Langkawi, Sumatra, Riau Archipelago, Java, Bali, and a range of smaller islands around these, including Babi, Bakong, Batam, Bawean, Bengkalis, Bintan, Bulan, Bunguran, Cuyo, Deli, Durian, Enggano, Galang, Jambongan, Karimon (Riau Is), Kundur, Lagong, Laut, Lingga, Lingung, Mapor, Moro Kecil, North Pagai, Nias, Panaitan, Payong, Penang, Pinie, Rupat, Siantan, Siberut, Simeulue, Singkep, Sugi, Sugi Bawa, Telibon, Tinggi, Tuangku, and the Tambelan Is. This species was originally present from the British Is in the extreme W, through Eurasia from S Scandinavia to S Siberia, extending as far E as Korea and Japan, and SE into some of the Sunda Is and Taiwan. In the S the species ranged along the Nile Valley to Khartoum, and N of the Sahara in Africa, more orless following the continental coasts of S, E, and SE Asia. Within this range it was absent only from extremely dry deserts, e.g. the driest regions of Mongolia and in China W of Sichuan; and alpine zones, such as the high altitudes of Pamir and Tien Shan. In recent centuries, the range of S. scrofa has changed dramatically because of hunting and changes in available habitat. The species disappeared from the British Is in the 17" century, from Denmark in the 19" century, and was greatly reduced in range and numbers in the 20" century from areas as distant as Tunisia, Sudan, Germany, and Russia. Following these severe declines, there were some slight population recoveries in Russia, Italy, Spain, and Germany in the mid-20™ century, and natural and assisted range expansions in Denmark and Sweden. The species has also been inadvertently reintroduced in various locations in the Great Britain via escapees of mixed origin from commercial farming enterprises. Ex-S. scrofa stocks also occur as introduced feral populations in various other parts of the world, including Australia, New Zealand, the eastern Malay Archipelago, and in North, Central, and South America. In all of these areas they are now generally recognized as a major pest.
Supplementary material 3 from: Astuti G, Roma-Marzio F, D'Antraccoli M, Bedini G, Carta A, Sebastiani F, Bruschi P, Peruzzi L (2017) Conservation biology of the last Italian population of Cistus laurifolius (Cistaceae): demographic structure, reproductive success and population genetics. Nature Conservation 22: 169-190. https://doi.org/10.3897/natureconservation.22.19809
Supplementary material 3 from: Astuti G, Roma-Marzio F, D'Antraccoli M, Bedini G, Carta A, Sebastiani F, Bruschi P, Peruzzi L (2017) Conservation biology of the last Italian population of Cistus laurifolius (Cistaceae): demographic structure, reproductive success and population genetics. Nature Conservation 22: 169-190. https://doi.org/10.3897/natureconservation.22.19809
Supplementary material 2 from: Astuti G, Roma-Marzio F, D'Antraccoli M, Bedini G, Carta A, Sebastiani F, Bruschi P, Peruzzi L (2017) Conservation biology of the last Italian population of Cistus laurifolius (Cistaceae): demographic structure, reproductive success and population genetics. Nature Conservation 22: 169-190. https://doi.org/10.3897/natureconservation.22.19809
Supplementary material 2 from: Astuti G, Roma-Marzio F, D'Antraccoli M, Bedini G, Carta A, Sebastiani F, Bruschi P, Peruzzi L (2017) Conservation biology of the last Italian population of Cistus laurifolius (Cistaceae): demographic structure, reproductive success and population genetics. Nature Conservation 22: 169-190. https://doi.org/10.3897/natureconservation.22.19809
Supplementary material 1 from: Astuti G, Roma-Marzio F, D'Antraccoli M, Bedini G, Carta A, Sebastiani F, Bruschi P, Peruzzi L (2017) Conservation biology of the last Italian population of Cistus laurifolius (Cistaceae): demographic structure, reproductive success and population genetics. Nature Conservation 22: 169-190. https://doi.org/10.3897/natureconservation.22.19809
Supplementary material 1 from: Astuti G, Roma-Marzio F, D'Antraccoli M, Bedini G, Carta A, Sebastiani F, Bruschi P, Peruzzi L (2017) Conservation biology of the last Italian population of Cistus laurifolius (Cistaceae): demographic structure, reproductive success and population genetics. Nature Conservation 22: 169-190. https://doi.org/10.3897/natureconservation.22.19809
Incidence and Echocardiographic Predictors of HFpEF in High-Risk Population Afferent to Italian Echo-labs Network
ClinicalTrials.gov study NCT05753553. IPD Sharing: UNDECIDED. Countries: 1. Publications: 2.
Feasibility and Safety of "Flash Glucose Monitoring-FGM" in an Adult Italian Population.
ClinicalTrials.gov study NCT04060732. IPD Sharing: Not stated. Countries: 1. Publications: 8.
Epidemiological Description of Health Determinants in Italian Anticoagulated Population
ClinicalTrials.gov study NCT05710562. IPD Sharing: NO. Countries: 1. Publications: 1.
Data from: Intrinsic and extrinsic factors act at different spatial and temporal scales to shape population structure, distribution and speciation in Italian Barbus (Osteichthyes: Cyprinidae)
Open the record for dataset details and reuse information.
Data from: A population genomics insight by 2b-RAD reveals populations’ uniqueness along the Italian coastline in Leptopsammia pruvoti (Scleractinia, Dendrophylliidae).
Open the record for dataset details and reuse information.
Figure 3 from: Francis B, Gilman RT (2019) Light intensity affects leaf morphology in a wild population of Adenostyles alliariae (Asteraceae). Italian Botanist 8: 35-45. https://doi.org/10.3897/italianbotanist.8.39393
Figure 3 Effects of light intensity on adaxial surface area A and FA B in A. Alliariae leaves. Each point represents the most basal leaf of a plant growing in a shaded (filled circles) or open (open circles) site. The solid line indicates a significant relationship (p < 0.0001) and the dashed line indicates a marginally significant relationship (p = 0.0732). Lines of best fit are back-transformed from models fitted to Box-Cox transformed data.
Figure 1 from: Francis B, Gilman RT (2019) Light intensity affects leaf morphology in a wild population of Adenostyles alliariae (Asteraceae). Italian Botanist 8: 35-45. https://doi.org/10.3897/italianbotanist.8.39393
Figure 1 The most basal leaf from an A. alliariae plant sampled in this study. Ls and Rs represent the measures for the midrib to the widest points on left and right of the leaf, respectively.
Supplementary material 1 from: Francis B, Gilman RT (2019) Light intensity affects leaf morphology in a wild population of Adenostyles alliariae (Asteraceae). Italian Botanist 8: 35-45. https://doi.org/10.3897/italianbotanist.8.39393
: Data type: morphometric data
SNPs genotypes of Italian wild boar (Sus scrofa) populations
<p>Human activities can globally modify natural ecosystems determining ecological, demographic and range perturbations for several animal species. These changes can jeopardize native gene pools in different ways, leading either to genetic homogenization or, conversely, to the split into genetically divergent demes.</p> <p> </p> <p>In the past decades, most European wild boar (<i>Sus scrofa</i>) populations were heavily managed by humans. Anthropic manipulations have strongly affected also Italian populations through heavy hunting, translocations and reintroductions that might have deeply modified their original gene pools.</p> <p> </p> <p>In this study, exploiting the availability of the well-mapped porcine genome, we applied genomic tools to explore genome-wide variability in Italian wild boar populations, investigate their genetic structure and detect signatures of possible introgression from domestic pigs and non-native wild boar. Genomic data from 134 wild boar sampled in six areas of peninsular Italy and in Sardinia were gathered using the Illumina Porcine SNP60 Beadchip (60k Single Nucleotide Polymorphisms – SNPs) and compared with reference genotypes from European specimens and from domestic pigs (both commercial and Italian local breeds), using multivariate and maximum-likelihood approaches.</p> <p> </p> <p>Pairwise F<sub>ST</sub> values, multivariate analysis and assignment procedures indicated that Italian populations were highly differentiated from all the other analyzed European wild boar populations.</p> <p> </p> <p>Overall, a lower heterozygosity was found in the Italian population than in the other European regions. The most diverging populations in Castelporziano Presidential Estate and Maremma Regional Park can be the result of long-lasting isolation, reduced population size and genetic drift. Conversely, an unexpected similarity was found among Apennine populations, even at high distances. Signatures of introgression from both non-Italian wild boar and domestic breeds were very limited.</p> <p> </p> <p>To summarize, we successfully applied genome-wide procedures to explore, for the first time, the genomic diversity of Italian wild boar, demonstrating that they represent a strongly heterogeneous assemblage of demes with different demographic and manipulation histories. Nonetheless, our results suggest that a native component of genomic variation is predominant over exogenous ones in most populations.</p>
Figure 5 from: Pupillo P, Astuti G (2017) Population structure of Erythronium dens-canis L. (Liliaceae) in the northern Apennines (Italy). Italian Botanist 4: 1-14. https://doi.org/10.3897/ib.4.12439
Figure 5 - Discoloration: loss of red pigment from red-brown spots in E. dens-canis leaves. Time course of the discoloration in A adult plants (FLO and MNF), and B JUV plants.
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