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193 results for “Joining”
A join of the Huber et al. (2014) catalog of stellar parameters and the Kepler Input Catalog
<p>This a join of the <a href="http://arxiv.org/abs/1312.0662">Huber et al. (2014)</a> and the <a href="http://arxiv.org/abs/1102.0342">Kepler Input Catalog</a></p>
Structural role for DNA ligase IV in promoting the fidelity of non-homologous end joining
<p>This repository contains the original, uncropped .tif files for gel images in Stinson et al., Nature Communications (2023). File names in the repository correspond to figure panels in the published manuscript.</p>
Figures 1–3. Neighbor-joining trees. 1 in Revision of New World Cosmorrhyncha Meyrick, 1913 (Lepidoptera: Tortricidae: Olethreutinae), with descriptions of five new species
Figures 1–3. Neighbor-joining trees. 1) Tree based on all available sequences of Cosmorrhyncha (n = 28), regardless of sequence length. 2) Tree based on sequences excluding the the 200bp segment that could not be amplified for several specimens of Cosmorrhyncha (n = 24). 3) Tree based on all sequences longer than 500bp (n = 23). [Bootstrap values ≥70 shown at nodes; BOLD process IDs or GenBank accession numbers next to species names.]
Fig. 12. Neighbour-joining tree showing p in Two new species of Leptanilloides Mann, 1823 (Formicidae: Dorylinae) from the Andes of southern Ecuador
Fig. 12. Neighbour-joining tree showing p-distances among DNA sequences of the wingless nuclear marker obtained for specimens of Leptanilloides Mann, 1823, Amyrmex Kusnezov, 1953 and Cylindromyrmex Mayr, 1870 (as outgroup), available in GenBank and sequenced here (specimen code 4052311). Labels provide species identifications and field IDs (in bold) or GenBank or BOLD numbers. Values at nodes correspond to the bootstrap values (%) and posterior probabilities obtained in the Neighbourjoining/parsimony/maximum likelihood/Bayesian inference analyses. Bootstrap values <80% and posterior probabilities <0.95 are not indicated.
Fig. 11. Neighbour-joining tree showing p in Two new species of Leptanilloides Mann, 1823 (Formicidae: Dorylinae) from the Andes of southern Ecuador
Fig. 11. Neighbour-joining tree showing p-distances among DNA sequences of the mitochondrial COI barcode fragment obtained for all specimens of Leptanilloides Mann, 1823 sequenced here and available in GenBank and BOLD. The tree was rooted with a COI sequence of Cylindromyrmex striatus Mayr, 1870 (GenBank accession number AY233723). Labels provide species identifications and field IDs (in bold) or GenBank or BOLD numbers. Values at nodes indicate bootstrap support only if it was above 80%.
Neighbor-joining phylogenetic tree based on 16S rRNA sequences.
<p><strong>Supplementary Figure (S1):</strong> Bayesian 50% majority rule phylogram of 16S ribosomal RNA region showing the phylogenetic relationships among the bacterial isolates in our study. The newly generated sequences are preceded by red circle. The GenBank sequences are preceded by blue squares. The GenBank accession number appears after the species name. Numbers above the branches represent Bayesian posterior probabilities (≥ 0.90), and the maximum parsimony bootstrap support values are given below the branches (≥70%). The out group used for tree construction preceded by empty circle.</p>
A join of the Kepler DR24 injections table with the robovetter table
<p>A join of the injection and robovetter results for Kepler DR24. The references for these data are:</p> <ul> <li>Christiansen et al. (2016): http://adsabs.harvard.edu/abs/2016ApJ...828...99C</li> <li>Coughlin et al. (2016): http://adsabs.harvard.edu/abs/2016ApJS..224...12C</li> <li>Mullally et al. (2016): http://adsabs.harvard.edu/abs/2016PASP..128g4502M</li> </ul>
Fig. 3. Neighbour-joining tree contructed from partial 12S in A combined morphological and molecular approach in identifying barnacle cyprids from the Matang Mangrove Forest Reserve in Malaysia: essentials for larval ecology studies
Fig. 3. Neighbour-joining tree contructed from partial 12S-rRNA gene fragment sequences of cyprids and adults of barnacle. The sequences were clustered into eight clades, and species name were labelled at the clades containing sequence(s) of identified adult of barnacle. Clades with no sequence of identified barnacle adult clustered within were designated as OTU (Operational Taxonomic Unit). Number of sequences in each clade were also shown. Scale bar denotes 0.02 base substituition per site.
Going Above and Beyond: A Tenfold Gain in the Performance of Luminescence Thermometers Joining Multiparametric Sensing and Multiple Regression
<p>Dataset accompanying figures published in the publication DOI: https://doi.org/10.5281/zenodo.5930575</p>
Fig. 1. The Neighbor Joining tree for 37 in Taxonomic Diversity Of The Genus Tor (Cyprinidae) From Aceh Waters In Indonesia Based On Cytochrome Oxidase Sub-Unit I (Coi) Gene
Fig. 1. The Neighbor Joining tree for 37 sequences of Tor from seven locations in Aceh Province estimated using 1000 bootstrap replications.
Figure 5. A phylogenetic tree was generated using the neighbor-joining method which shows the genetic relationship between C. sphaerospermum 2 in Morphological and molecular identification of Cladosporium sphaerospermum isolates collected from tomato plant residues
Figure 5. A phylogenetic tree was generated using the neighbor-joining method which shows the genetic relationship between C. sphaerospermum 2 (as indicated in red circle) and the other C. sphaerospermum isolates deposited in GenBank (NCBI)
Fig. 2. Neighbor-joining phylogenetic tree for a 219 in Prevalence of filarioid nematodes and trypanosomes in American robins and house sparrows, Chicago USA
Fig. 2. Neighbor-joining phylogenetic tree for a 219 bp region of the trypanosome 18s rRNA gene. Underlined sequences are from this study. Sequences for additional Trypanosoma spp. were downloaded from NCBI Genbank for comparison and Bodo caudatus was used as an outgroup. Numbers by branches indicate statistical bootstrap support of À50%.
Fig. 1. Neighbor-joining phylogenetic trees for a 475 in Prevalence of filarioid nematodes and trypanosomes in American robins and house sparrows, Chicago USA
Fig. 1. Neighbor-joining phylogenetic trees for a 475 bp region of the 18S rRNA gene for filarioid nematodes (A) and a 529 bp region of the filarial nematode mitochondrial cytochrome c oxidase subunit I gene (B). Sequences were obtained from bird blood clots, bird tissues, or adult nematodes recovered from birds. Underlined sequences are from this study. Additional sequences for filarial nematode species were downloaded from NCBI Genbank for comparison and Thelazia lacrimalis and Caenorhabditis elegans were used as outgroups. Numbers by branches indicate statistical bootstrap support of À50%.
Рис. 1. ФиΛогенетические Αеревья хантавируса AMRV и его прироΑного носитеΛя восточноазиатской мыши Apodemus peninsulae Thomas, 1906. А. ФиΛогенетическое Αерево восточноазиатской мыши Apodemus peninsulae, построенное метоΑом «максимаΛьного правΑопоΑобия» (ML) и поΛученное на основе анаΛиза участка гена цитохрома b мтΔНК (744 п.н.). В узΛах ветвΛения указаны бутстреп-поΑΑержки, рассчитанные ΑΛя 1000 повторов. Цветными Λиниями обозначены фиΛогенетические Λинии: Αве Китайские (зеΛеный), Корейская «Korea» (синий), Амурская «Amur» (красный). ПоΛужирным шрифтом выΑеΛены собственные образцы. Названия образцов из GenBank/NCBI быΛи сокращены; B. ФиΛогенетическое Αерево из работы Α. Н. Яшиной с ΑопоΛнениями, построенное метоΑом «бΛижайшего сосеΑа» (NJ) на основе посΛеΑоватеΛьностей фрагмента М-сегмента (2737–2980 н.п.) генома хантавирусов. В узΛах ветвΛения указаны бутстреппоΑΑержки, рассчитанные ΑΛя 1000 повторов. Жирным выΑеΛены иссΛеΑованные РНК изоΛяты (Яшина 2012; Яшина и Αр. 2019) Fig. 1. Phylogenetic trees of AMRV and its natural reservoir host — the Korean field mouse Apodemus peninsulae Thomas, 1906. A. Phylogenetic tree of the Korean field mouse Apodemus peninsulae constructed by the "maximum likelihood" method (ML). The data are obtained from the analysis of the cytochrome b mtDNA gene fragments (744 bp). Bootstrap supports calculated for 1,000 repeats are indicated in the branching nodes. Colored lines indicate phylogenetic lines: two Chinese (green), Korea (blue), and Amur (red). Own samples are highlighted in bold. The names of the samples from GenBank/NCBI have been shortened; B. Phylogenetic tree from L. N. Yashina's work with additions constructed by the neighbour joining method (NJ). It is based on the sequences of an M-segment fragment (2737–2980 bp) of the hantavirus genome. Bootstrap supports calculated for 1,000 repeats are indicated in the branching nodes. The researched RNA isolates are highlighted in bold (Yashina 2012; Yashina et al. 2019) in Variability of the gene cyt b in the Korean field mouse Apodemus peninsulae Thomas, 1906 - a reservoir host of AMRV in the Khasansky District of Primorsky Krai
Рис. 1. ФиΛогенетические Αеревья хантавируса AMRV и его прироΑного носитеΛя восточноазиатской мыши Apodemus peninsulae Thomas, 1906. А. ФиΛогенетическое Αерево восточноазиатской мыши Apodemus peninsulae, построенное метоΑом «максимаΛьного правΑопоΑобия» (ML) и поΛученное на основе анаΛиза участка гена цитохрома b мтΔНК (744 п.н.). В узΛах ветвΛения указаны бутстреп-поΑΑержки, рассчитанные ΑΛя 1000 повторов. Цветными Λиниями обозначены фиΛогенетические Λинии: Αве Китайские (зеΛеный), Корейская «Korea» (синий), Амурская «Amur» (красный). ПоΛужирным шрифтом выΑеΛены собственные образцы. Названия образцов из GenBank/NCBI быΛи сокращены; B. ФиΛогенетическое Αерево из работы Α. Н. Яшиной с ΑопоΛнениями, построенное метоΑом «бΛижайшего сосеΑа» (NJ) на основе посΛеΑоватеΛьностей фрагмента М-сегмента (2737–2980 н.п.) генома хантавирусов. В узΛах ветвΛения указаны бутстреппоΑΑержки, рассчитанные ΑΛя 1000 повторов. Жирным выΑеΛены иссΛеΑованные РНК изоΛяты (Яшина 2012; Яшина и Αр. 2019) Fig. 1. Phylogenetic trees of AMRV and its natural reservoir host — the Korean field mouse Apodemus peninsulae Thomas, 1906. A. Phylogenetic tree of the Korean field mouse Apodemus peninsulae constructed by the "maximum likelihood" method (ML). The data are obtained from the analysis of the cytochrome b mtDNA gene fragments (744 bp). Bootstrap supports calculated for 1,000 repeats are indicated in the branching nodes. Colored lines indicate phylogenetic lines: two Chinese (green), Korea (blue), and Amur (red). Own samples are highlighted in bold. The names of the samples from GenBank/NCBI have been shortened; B. Phylogenetic tree from L. N. Yashina's work with additions constructed by the neighbour joining method (NJ). It is based on the sequences of an M-segment fragment (2737–2980 bp) of the hantavirus genome. Bootstrap supports calculated for 1,000 repeats are indicated in the branching nodes. The researched RNA isolates are highlighted in bold (Yashina 2012; Yashina et al. 2019)
Fig. 2. Simplified neighbor-joining tree reconstructed from partial cox1 in Lurking in the dark: Cryptic Strongyloides in a Bornean slow loris
Fig. 2. Simplified neighbor-joining tree reconstructed from partial cox1 gene (716 bp) sequences of Strongyloides spp. S. fuelleborni sequences for Bornean primates cluster within the S. fuelleborni group, together with previously described sequences for the parasite found in African and Japanese primates. The S. stercoralis cluster includes sequences from humans from Laos, Africa and Japan, captive chimpanzees, and dogs. The Strongyloides sp. cluster corresponds to sequences from the slow loris. An alternative hypothesis is presented next to the tree, where instead of representing a different species, Strongyloides sp. would be part of a cryptic assemblage within the S. stercoralis group.
Fig. 3. Neighborjoining phylogenetic tree constructed from a in Report on 14 unrecorded bacterial species in Korea that belong to the phyla Bacteroidetes and Deinococcus-Thermus
Fig. 3. Neighborjoining phylogenetic tree constructed from a comparative analysis of 16S rRNA gene sequences showing the relationships between the strains isolated in this study and their relatives of the class Bacteroidetes. Numbers at nodes are levels of bootstrap support for branch points, based on 1,000 resampling; values are shown only if greater than 70%. Filled circles at nodes indicate that the corresponding nodes were also recovered using maximumlikelihood algorithm. Bar, 5% sequence divergence.
Fig. 2. Neighborjoining phylogenetic tree constructed from a in Report on 14 unrecorded bacterial species in Korea that belong to the phyla Bacteroidetes and Deinococcus-Thermus
Fig. 2. Neighborjoining phylogenetic tree constructed from a comparative analysis of 16S rRNA gene sequences showing the relationships between the strains isolated in this study and their relatives of the class DeinococcusThermus. Numbers at nodes are levels of bootstrap support for branch points, based on 1,000 resampling; values are shown only if greater than 70%. Filled circles at nodes indicate that the corresponding nodes were also recovered using maximumlikelihood algorithm. Bar, 2% sequence divergence.
Fig. 4. Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of four unrecorded wild yeasts from the soils of Republic of Korea in winter
Fig. 4. Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain NH33 with closely related species. Bootstrap values (>50%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 3. Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of four unrecorded wild yeasts from the soils of Republic of Korea in winter
Fig. 3. Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain NH19 with closely related species. Bootstrap values (>50%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 2. Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of four unrecorded wild yeasts from the soils of Republic of Korea in winter
Fig. 2. Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strains NH20 and YP416 with closely related species. Bootstrap values (>50%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.