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ShareScore release 0.9.0
Dataset results
2 results for “Joint visualization of cells and genes”
CAbiNet: Joint clustering and visualization of cells and genes for single-cell transcriptomics
<p>We here provide the data sets to reproduce the results in our manuscript "CAbiNet: Joint clustering and visualization of cells and genes for single-cell transcriptomics". Our package "CAbiNet" can be downloaded from https://github.com/VingronLab/CAbiNet. The scripts to reproduce the results in our manuscript can be found from https://github.com/VingronLab/CAbiNet_paper.</p><p>You can find the description of folders in 'Data.zip' in the README.md file.</p>
CAbiNet: Joint visualization of cells and genes based on a gene-cell graph
<p>We here provide the data sets to reproduce the results in our manuscript 'CAbiNet: Joint visualization of cells and genes based on a gene-cell association graph'. The code to reproduce our analysis with the data sets provided here can be found at: <a href="https://github.com/VingronLab/CAbiNet_paper">https://github.com/VingronLab/CAbiNet_paper</a>.</p> <p>You can find three types of data here: raw data, preprocessed data, and benchmarking results.</p> <p>Tips for downloading the data:</p> <p>- If you want to reproduce all the results in our paper from the beginning to the end, please download the rawdata.zip and disscussed_data.zip . Then you can go through our codes.</p> <p>- If you only want to reproduce the figures shown in the paper, please download the discussed_data.zip and benchmarking.zip.</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.