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Dataset results
33 results for “Lathyrus sativus”
Lathyrus sativus L. (BR0000011957881)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011957614)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011958246)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011958154)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011960287)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011957942)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011957256)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011957850)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011957379)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011957553)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Genome sequencing and assembly of Lathyrus sativus
<p>The dataset contains the whole-genome assembly and protein sequences of <em>Lathyrus sativus</em> cultivar Pusa-24.</p>
Lathyrus sativus LS007 genome assembly and annotation Rbp1.0
<p>Genome assembly of grass pea (<em>Lathyrus sativus</em> L.) genotype LS007, assembled from PromethION nanopore data and polished using Illumina HiSeq PE data. The assembly was annotated using the mikado-minos pipeline developed by the Earlham Institute. Also included is a separate annotation track for repeat sequences produced using the DANTE pipleline. </p> <p> </p> <p>For any questions regarding this dataset, contact peter.emmrich@jic.ac.uk</p> <p> </p> <p>Note: ctg14433 has been manually corrected based on sequenced amplicon data. Files have been updated accordingly.</p> <p> </p> <p><strong>Assembly files:</strong></p> <p>Lsativus_LS007_Rbp1.0.7z - compressed complete assembly without scaffolding. The annotation refers to this assembly</p> <p>Rbp_9 largest HiC scaffolds.7z - compressed fasta file of the largest 9 scaffolds following HiC scaffolding</p> <p>Lsat_LS007_Rbp_chloroplast.fasta - fasta file of the complete LS007 chloroplast genome</p> <p>Lsat_LS007_Rbp_mitochondrion.fasta - fasta file of the complete LS007 mitochondrial genome</p> <p> </p> <p><strong>Annotation tracks:</strong></p> <p>LATSA3860_EIv1.0.annotation.gff3</p> <p>DANTE_transposable_element_protein_domains.gff3</p> <p>Full_length_LTR_retrotransposons.gff3</p> <p>Repeat_annotation_classI_classII_satellites.gff3</p> <p> </p> <p><strong>Annotation FASTA files:</strong></p> <p>LATSA3860_EIv1.0.annotation.gff3.cds.fasta</p> <p>LATSA3860_EIv1.0.annotation.gff3.cdna.fasta</p> <p>LATSA3860_EIv1.0.annotation.gff3.pep.fasta</p> <p> </p> <p><strong>Summaries and statistics:</strong></p> <p>LATSA3860_EIv1.0.annotation.gff3.final_table.tsv</p> <p>LATSA3860_EIv1.0.annotation.gff3.mikado_stats.txt</p> <p>LATSA3860_EIv1.0.annotation.gff3.biotype_conf.summary</p> <p>LATSA3860_EIv1.0.annotation.gff3.final_table.tsv</p> <p>LATSA3860_EIv1.0.annotation.gff3.pep.fasta.functional_annotation.tsv</p> <p>NOT_UPDATED_LATSA3860_EIv1.0.annotation.gff3.metrics.tsv *</p> <p>Blobtools_passed_contigs.txt - list of all contigs of the assembly that pass the BlobTools filter (Streptophyta, 20-100x coverage, >50 kbp) </p> <p> </p> <p>*this file has not been updated to reflect the correction to ctg14433</p>
Fig. 4 in Suspension cell secretome of the grain legume Lathyrus sativus (grasspea) reveals roles in plant development and defense responses
Fig. 4. Physicochemical assessment of the grasspea suspension secretome (GSS), including pI (A), molecular weight (in kDa) (B), and hydrophilicity (C), with respect to MSS, DSS and LSS (MSS corresponds to the monocot suspension secretome, DSS to the dicot suspension secretome and LSS to the lower plant suspension secretome).
Fig. 2 in Suspension cell secretome of the grain legume Lathyrus sativus (grasspea) reveals roles in plant development and defense responses
Fig. 2. Generation of grasspea calli, establishment of suspension culture and isolation of the grasspea suspension secretome (GSS). (A) Root-cut and shoot-cut embryo axes were employed for the generation of 4-week-old calli, which were bulked together in a suspension culture. (B) Microscopic examination of suspension cells and viability assessment using Evans blue (left panel) and FDA (right panel). (C) Quantitative analysis of physicochemical properties including changes in pH in the suspension culture, fresh weight (FW), dry weight (DW), soluble sugars and total protein. (D) Protein SDS-PAGE profile of the grasspea secretome. Lane 1 represents the molecular weight marker (MW). Purity evaluation of grasspea secreted fraction using (E) catalase activity and (F) western blotting with anti-RbcL (Supplementary Fig. S1). Relative catalase activities are presented as mean ± SE of triplicate experiments.
Fig. 3 in Suspension cell secretome of the grain legume Lathyrus sativus (grasspea) reveals roles in plant development and defense responses
Fig. 3. Overview of total grasspea suspension secreted (GSS) proteins and prediction of mode of secretion and (A) localization using multiple tools (B). Comparison of shared and distinct GSS proteins, first (C) with respect to total in vitro secretome (IVS) and in planta secretome (IPS) and second (D) compared to the in vitro suspension culture secretome reported in monocots, dicots, and lower plants, abbreviated as MSS, DSS and LSS, respectively (MSS corresponds to monocot suspension secretome, DSS to dicot suspension secretome and LSS to lower plant suspension secretome).
Fig. 1 in Suspension cell secretome of the grain legume Lathyrus sativus (grasspea) reveals roles in plant development and defense responses
Fig. 1. Schematic representation of the experimental design and workflow of the establishment of the grasspea suspension secretome (GSS). Proteomic profiling was accomplished by generating suspension culture and sequential assessment of physicochemical properties and protein identification.
Fig. 6 in Suspension cell secretome of the grain legume Lathyrus sativus (grasspea) reveals roles in plant development and defense responses
Fig. 6. Localization validation of endochitinase (S597) and G-type lectin S-receptor-like serine threonine kinase (S718). The panels include (A) expression of YFPtagged S597 in onion epidermal cells, (B) plasmolysis of S597-transformed onion peel (C), expression of YFP-tagged S718 in onion peel cells and (D) plasmolyzed onion peel cells expressing YFP-tagged S718. A pSITE3CA empty vector control was also monitored besides the target genes (E).
Lathyrus sativus L. (BR0000011957195)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000011957478)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lathyrus sativus L. (BR0000012424146)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.