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163 results for “Localization Relations”
Database of local seismicity registered on ocean bottom seismometers (OBS). Database related to Bornstein et al. (accepted in Earth and Space Science), PICKBLUE
<p>We assembled a database of Ocean Bottom Seismometer (OBS) waveforms and manual P and S picks from local seismicity, on which we trained PickBlue, a deep-learning picker, using the seismometer data and the hydrophone channel. The dataset belongs to Bornstein et al. (accepted 2023 in Earth and Space Science). The picker and database are available in the SeisBench platform, allowing easy and direct application to OBS traces and hydrophone records.</p><p>The complete database is also accessible with SEISBENCH: <br><a href="https://seisbench.readthedocs.io">https://seisbench.readthedocs.io</a><br>SEISBENCH on github:<br><a href="https://github.com/seisbench">https://github.com/seisbench</a></p><p>Related paper:</p><p>Bornstein, T., Lange, D., Münchmeyer, J., Woollam, J., Rietbrock., A., Barcheck, G., Grevemeyer, I., Tilmann, F. (accepted 2023 in Earth and Space Science). PickBlue: Seismic phase picking for ocean bottom seismometers with deep learning, Earth and Space Science. </p>
Data archive for "Flight behaviour of Red Kites within their breeding area in relation to local weather variables: Conclusions with regard to wind turbine collision mitigation"
<p>The archive contains the data files to reproduce the results presented in the article “Flight behaviour of Red Kites within their breeding area in relation to local weather variables: Conclusions with regard to wind turbine collision mitigation” published in the Journal of Applied Ecology.</p>
Data from: Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri
<p>Numerous landscape genomic studies have identified single-nucleotide polymorphisms (SNPs) and genes potentially involved in local adaptation. Rarely, it has been explicitly evaluated whether these environmental associations also hold true beyond the populations studied. We tested whether putatively adaptive SNPs in <em>Arabidopsis</em> <em>halleri</em> (Brassicaceae), characterized in a previous study investigating local adaptation to a highly heterogeneous environment, show the same environmental associations in an independent, geographically enlarged set of 18 populations. We analysed new SNP data of 444 plants with the same methodology (partial Mantel tests, PMTs) as in the original study and additionally with a latent factor mixed model (LFMM) approach. Of the 74 candidate SNPs, 41% (PMTs) and 51% (LFMM) were associated with environmental factors in the independent data set. However, only 5% (PMTs) and 15% (LFMM) of the associations showed the same environment–allele relationships as in the original study. In total, we found 11 genes (31%) containing the same association in the original and independent data set. These can be considered prime candidate genes for environmental adaptation at a broader geographical scale. Our results suggest that selection pressures in highly heterogeneous alpine environments vary locally and signatures of selection are likely to be population-specific. Thus, genotype-by-environment interactions underlying adaptation are more heterogeneous and complex than is often assumed, which might represent a problem when testing for adaptation at specific loci.</p>
Figure 1. Collection localities, 1 in First report of two ark shells, Anadara consociata (E.A. Smith, 1885) and A. troscheli (Dunker, 1882) (Arcidae: Anadarinae) from Indian waters with notes on morpho-taxonomy of some related species from east coast of India
Figure 1. Collection localities, 1-Bokhali, 2-Sagar Island, 3-Junput, 4-Jalda (Tajpur), 5-Digha, 6-Udaypur & Talsari, 7-Chandipur, 8-Paradip, 9-Chandrabhaga, 10-Puri, 11-Chilka New Mouth, 12-Gopalpur, 13-Vishakhapatnam, 14-Kakinada, 15-Pulicat lake, 16-Chennai, 17-Rameswaram, 18-Tuticorin.
Data and code related to publication "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" - Aubree et al. 2021
<p>Those data sets and codes are related to the manuscript "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" available on BioRXiv.</p> <p>All the information that are necessary to use those data sets and codes are contained in the file "readme.txt".</p>
FIG. 3 in Schistochila gradsteinii sp. nov., a new species from New Caledonia related to S. vitreocincta (Schistochilaceae, Marchantiophyta), with a key to the local species and a description of the gynoecium of S. integerrima
FIG. 3. – Transverse sections of stems of: A, B, Schistochila gradsteinii Thouvenot sp. nov.; C, S. vitreocincta (Herzog) X.L.He et Glenny; D, S. aligera (Nees et Blume) J.B.Jack et Steph. E, S. integerrima Steph. A, B from the holotype, C from Thouvenot NC1732, D from Thouvenot NC671, E from Thouvenot NC2825. Scale bars. A, C-E: 20 µm, B, 100 µm.
FIG. 1 in Schistochila gradsteinii sp. nov., a new species from New Caledonia related to S. vitreocincta (Schistochilaceae, Marchantiophyta), with a key to the local species and a description of the gynoecium of S. integerrima
FIG. 1. — Schistochila integerrima Steph.: A, cluster of archegonia surrounded by scales, bract involucre and bracts (longitudinal section); B, C, bracts; D, bracteole; E, top of fertile shoot with gynoecium and fertile innovation; F, gynoecium (top view). From Thouvenot NC2825. Scale bars: 1 mm.
InterTVA. Single-trial beta maps for event-related voice localizer.
<p>The InterTVA dataset has been acquired with two main objectives. First, from a neuroscientific perspective, it aims at studying the inter-individual differences observed in people's ability at performing voice perception and voice identification tasks. Secondly, from a methodological perspective, it should allow benchmarking multi-view machine learning methods. Indeed, it includes several MRI modalities: anatomical MRI, diffusion MRI and several sessions of functional MRI -- one resting state run, one event-related voice localizer run (passive listening of vocal and non-vocal sounds), and four runs during which the subject performed a voice identification task.</p> <p>The present dataset contains a pre-processed version of the data acquired during the event-related voice localizer run. A GLM was performed using one regressor for each of the 144 trials, during each of which the participant was passively listening to a vocal or non-vocal stimulus. We therefore provide 144 beta maps for 39 subjects out of the 40 participants (one was excluded for excessive motion). This allows performing group-level MVPA using an inter-subject pattern analysis (ISPA) approach, as described in the following paper:</p> <p>Q. Wang, B. Cagna, T. Chaminade, et S. Takerkart, « Inter-subject pattern analysis: A straightforward and powerful scheme for group-level MVPA », <em>NeuroImage</em>, vol. 204, p. 116205, janv. 2020. https://doi.org/10.1016/j.neuroimage.2019.116205</p> <p>The source code to perform ISPA is also available: http://www.github.com/SylvainTakerkart/inter_subject_pattern_analysis</p> <p>If you use this data, please cite the following paper which describes it exhaustively:</p> <p>V. Aglieri, B. Cagna, P. Belin, S. Takerkart, "Single-trial fMRI activation maps measured during the InterTVA event-related voice localizer. A data set ready for inter-subject pattern analysis", Data in Brief, vol. 29, p. 105170, April 2020. https://doi.org/10.1016/j.dib.2020.105170</p>
Text-fig. 2. The relation between number of genera and localities in MN 5 of central Europe (CE) and the Iberian Peninsula (IB). a. Localities ordered from highest to lowest number of taxa; the distribution is more equitable in the Iberian Peninsula. b. Genera ordered from most common to rarest; the distribution of genera is more equitable in central Europe. The low number of common genera is an artefact of incomplete faunal lists (see text). in Generically Speaking, A Survey On Neogene Rodent Diversity At The Genus Level In The Now Database
Text-fig. 2. The relation between number of genera and localities in MN 5 of central Europe (CE) and the Iberian Peninsula (IB). a. Localities ordered from highest to lowest number of taxa; the distribution is more equitable in the Iberian Peninsula. b. Genera ordered from most common to rarest; the distribution of genera is more equitable in central Europe. The low number of common genera is an artefact of incomplete faunal lists (see text).
Text-fig. 3 Ternary diagram of the relative abundance (in %) of juvenile, prime adult, and old adult specimens in samples of Castor fiber (data from Table 3). The red dots indicate the Pleistocene samples of Bilzingsleben II (B), Weimar- Ehringsdorf (E), and Weimar-Taubach (T), the black dot represents an extant population from Telemark in Norway (data from Campbell 2009). Abbreviations of zones (after Discamps and Costamagno 2015): JOP – Juveniles-Old-Prime dominated zone, JPO – Juveniles-Prime-Old dominated zone, O – Old dominated zone, P – Prime dominated zone. The diagram shows the position of all three fossil samples in the prime dominated zone. in Mortality Profiles Of Castor And Trogontherium (Mammalia: Rodentia, Castoridae), With Notes On The Site Formation Of The Mid-Pleistocene Hominin Locality Bilzingsleben Ii (Thuringia, Central Germany)
Text-fig. 3 Ternary diagram of the relative abundance (in %) of juvenile, prime adult, and old adult specimens in samples of Castor fiber (data from Table 3). The red dots indicate the Pleistocene samples of Bilzingsleben II (B), Weimar- Ehringsdorf (E), and Weimar-Taubach (T), the black dot represents an extant population from Telemark in Norway (data from Campbell 2009). Abbreviations of zones (after Discamps and Costamagno 2015): JOP – Juveniles-Old-Prime dominated zone, JPO – Juveniles-Prime-Old dominated zone, O – Old dominated zone, P – Prime dominated zone. The diagram shows the position of all three fossil samples in the prime dominated zone.
Text-fig. 4. Mortality profile (relative abundance of age groups) of Trogontherium based on dp4 and p4 from the fossil sites of Bilzingsleben II, Mosbach 2 and Tegelen. Data from Table 4. in Mortality Profiles Of Castor And Trogontherium (Mammalia: Rodentia, Castoridae), With Notes On The Site Formation Of The Mid-Pleistocene Hominin Locality Bilzingsleben Ii (Thuringia, Central Germany)
Text-fig. 4. Mortality profile (relative abundance of age groups) of Trogontherium based on dp4 and p4 from the fossil sites of Bilzingsleben II, Mosbach 2 and Tegelen. Data from Table 4.
FIG. 2 in New material of Eocene Helaletidae (Perissodactyla, Tapiroidea) from the Irdin Manha Formation of the Erlian Basin, Inner Mongolia, China and comments on Related Localities of the Huheboerhe Area
FIG. 2. Cranium and mandible of Paracolodon fissus (IVPP V 22640). A, lateral view of cranium and mandible; B−C, dorsal and ventral views of the cranium.
FIG. 3 in New material of Eocene Helaletidae (Perissodactyla, Tapiroidea) from the Irdin Manha Formation of the Erlian Basin, Inner Mongolia, China and comments on Related Localities of the Huheboerhe Area
FIG. 3. Right petrosal of Paracolodon fissus (IVPP V 22640). Parallel lines indicate damaged surfaces. The anteroposterior length of the promontorium is about 14.66 mm. Abbreviations: bg, basicapsular groove; bo, basiocciptial; bs, basisphenoid; ci, crista interfenestralis; ctp, caudal tympanic process; eam, external acoustic meatus; fc, fenestra cochleae; fs, facial sulcus; fv, fenestra vestibuli; gpns, greater petrosal nerve sulcus; hf, hypoglossal foramen; mlf, middle lacerate foramen; oc, occipital condyle; p, promontorium; pgp, postglenoid process; pcop, paracondylar process; s, squamosal; sf, stapedial muscle fossa; sff, secondary facial foramen; ts, transpromontorial sulcus; ttf, fossa for the tensor tympani muscle.
FIG. 11 in New material of Eocene Helaletidae (Perissodactyla, Tapiroidea) from the Irdin Manha Formation of the Erlian Basin, Inner Mongolia, China and comments on Related Localities of the Huheboerhe Area
FIG. 11. The single most parsimony tree and the distribution of selected taxa. The left column showing Polarity Chrons, NALMA, and ALMA was modified from Vandenberghe et al. (2012). Numbers on the cladogram are node numbers, and numbers in the parentheses are Bremer Support which is greater than 1. Abbreviations: ALMA, Asian Land Mammal Ages; Ck., Clarkforkian; Du., Duchesnean; Er., Ergilian; Ga., Gashatan; Hs., Hsandagolian; 55 NALMA, North American Land Mammal Ages; Or., Orellan; Pa., Paleocene; Ta., Tabenbulakian; Th., Thanetian; Ul., Ulangochuian; Wt., Whitneyan.
FIG. 1 in New material of Eocene Helaletidae (Perissodactyla, Tapiroidea) from the Irdin Manha Formation of the Erlian Basin, Inner Mongolia, China and comments on Related Localities of the Huheboerhe Area
FIG. 1. Topographic map of the Huheboerhe area (modified from Meng et al., 2007: fig. 1). 1, presumed location of Camp Margetts; 2, Daoteyin Obo (5 miles east of Camp Margetts); 3, Nuhetingboerhe (6 miles west of Camp Margetts); 4, Wulanboerhe; 5, Huheboerhe (7 miles west and southwest [235°] of Camp Margetts); 6, Changanboerhe (10 miles southwest of Camp Margetts); 7, Jibuqilehasha.
FIG. 4 in New material of Eocene Helaletidae (Perissodactyla, Tapiroidea) from the Irdin Manha Formation of the Erlian Basin, Inner Mongolia, China and comments on Related Localities of the Huheboerhe Area
FIG. 4. Occlusal view of upper cheek teeth of Paracolodon fissus, Paracolodon inceptus, and Desmatotherium mongoliense. A−B, P. fissus; A, left P2−M3 (IVPP V 22640); B, left P2−P4 (AMNH FM 20161); C−D, P. inceptus; C, left P1−P3 (AMNH FM 20355); D, left P3−M3 (AMNH FM 20357); E−G, D. mongoliense; E, left P1−M2 (IVPP V 14692); F, left P3−P4 (AMNH FM 20156); G, left P2−M3 (AMNH FM 19161, reversed).
FIG. 10 in New material of Eocene Helaletidae (Perissodactyla, Tapiroidea) from the Irdin Manha Formation of the Erlian Basin, Inner Mongolia, China and comments on Related Localities of the Huheboerhe Area
FIG. 10. Longitudinal section of the ectoloph of upper right P4 of Paracolodon fissus and Desmetotherium mongoliense showing the curved HSB configuration. A, P. fissus with continuous and relatively narrower HSB pattern; B, D. mongoliense with waved and relatively wider HSB pattern. Abbreviations: if, interface; me, metacone; pa, paracone; pas, parastyle.
Text-fig. 4. Lithostratigraphy of the BCB and standard ammonite zonation in relation to Schloenbachia lymensis occurrence. a. Plaňany. b. Slaný. Dashed lines indicate chronostratigraphic ranges of marine strata in both localities. For detailed litho- and biostratigraphy of the Pecínov Member see Košťák et al. (2018). in Taxonomy And Stratigraphic Distribution Of The Ammonite Schloenbachia Neumayr, 1875 From The Bohemian Cretaceous Basin
Text-fig. 4. Lithostratigraphy of the BCB and standard ammonite zonation in relation to Schloenbachia lymensis occurrence. a. Plaňany. b. Slaný. Dashed lines indicate chronostratigraphic ranges of marine strata in both localities. For detailed litho- and biostratigraphy of the Pecínov Member see Košťák et al. (2018).
Text-fig. 47. Scanning electron microscope (SEM) images of reticulate-foveolate pollen on the surface of a fruit of Serialis antiquum; Torres Vedras locality, Portugal. a, b) Pollen grain showing angular outline and tectum perforated by foveolae of different sizes; note the braided tectum ornamentation formed by aggregations of small ridges (b); aperture not known; c, d) Pollen grain showing angular outline, tectum perforated by foveolae that become smaller toward the presumed pole; note the relatively smooth tectum and faint pattern of braiding ridges (d); aperture not known. Specimens, TV43-S171535-01 (a, b), TV43-S171535-02 (c, d). Scale bars 6 Μm (a, c), 1 Μm (b, d). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 47. Scanning electron microscope (SEM) images of reticulate-foveolate pollen on the surface of a fruit of Serialis antiquum; Torres Vedras locality, Portugal. a, b) Pollen grain showing angular outline and tectum perforated by foveolae of different sizes; note the braided tectum ornamentation formed by aggregations of small ridges (b); aperture not known; c, d) Pollen grain showing angular outline, tectum perforated by foveolae that become smaller toward the presumed pole; note the relatively smooth tectum and faint pattern of braiding ridges (d); aperture not known. Specimens, TV43-S171535-01 (a, b), TV43-S171535-02 (c, d). Scale bars 6 Μm (a, c), 1 Μm (b, d).
Text-fig. 6. Scanning electron microscope (SEM) images of megaspores (a–c) and attached microspores (c, d) with possible affinities to Salviniales; Torres Vedras locality, Portugal. a) Lateral view of Molaspora sp. megaspore showing almost spherical body with a relatively long apical acrolamella; b) Apical view of Molaspora sp. megaspore showing almost spherical body with slightly twisted apical acrolamella; c, d) Lateral view of Arcellites punctatus megaspore showing coarsely rugulate body and apical acrolamella with attached microspores (d). Specimens, TV39-S174616 (a), TV38-S170224 (b), TV43-S170169 (c, d). Scale bars 100 Μm (a–c), 25 Μm (d). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 6. Scanning electron microscope (SEM) images of megaspores (a–c) and attached microspores (c, d) with possible affinities to Salviniales; Torres Vedras locality, Portugal. a) Lateral view of Molaspora sp. megaspore showing almost spherical body with a relatively long apical acrolamella; b) Apical view of Molaspora sp. megaspore showing almost spherical body with slightly twisted apical acrolamella; c, d) Lateral view of Arcellites punctatus megaspore showing coarsely rugulate body and apical acrolamella with attached microspores (d). Specimens, TV39-S174616 (a), TV38-S170224 (b), TV43-S170169 (c, d). Scale bars 100 Μm (a–c), 25 Μm (d).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.