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Supporting data to M. Cavallaro, et al., 3'-5' crosstalk contributes to transcriptional bursting, 2019
<p>This repository contains supporting data to reference [1]. Please cite [1] if you find this repository useful. The data include:</p> <ul> <li>Flow cytometry data of HBB and HIV transgenes' expression in `.fcs` format.</li> <li>NanoString data for HIV expression.</li> <li>smFISH data for HBB and Akt1 gene expression.</li> </ul> <p>[1] M. Cavallaro, <em>et al.</em>, 3'-5' interactions contribute to transcriptional bursting, bioR$\chi$iv 514174. <a href="https://doi.org/10.1101/514174">https://doi.org/10.1101/514174</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 3: 2010 - 2014) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2010 - 2014. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6344012">https://doi.org/10.5281/zenodo.6344012</a></p>
Fig. 3 in Integrative description of Macrobiotus canaricus sp. nov. with notes on M. recens (Eutardigrada: Macrobiotidae)
Fig. 3. Macrobiotus canaricus sp. nov., paratypes, cuticular structures on legs. A–B. The patch of granulation on the external surface of leg III with a large oval cuticular pore at the centre of the patch (PCM and SEM, respectively). C–D. The patch of granulation and the cuticular bulge (pulvinus) on the internal surface of leg II (PCM and SEM, respectively). E–F. Granulation on leg IV (PCM and SEM, respectively). Filled flat arrowheads indicate the large pore in the centre of the external granulation patch, filled indented arrowheads indicate the cuticular fold (pulvinus) on the internal leg surface, and empty indented arrowheads indicate granulation on the internal leg surface. Scale bars in μm.
Fig. 3 in Genetic and morphological evidence for cryptic species in Macrobrachium australe and resurrection of M. ustulatum (Crustacea, Palaemonidae)
Fig. 3. Macrobrachium australe (Guérin-Méneville, 1838 in Guérin-Méneville 1829–1838), MNHN- IU-2013-13198. A. Cephalothorax. B. Epistome. C. Fourth thoracic sternite. D. Major second pereiopod. E. Major second pereiopod finger. F. Minor second pereiopod. G. Minor second pereiopod finger. Scale bars: A, E, G = 2 mm; B–C = 1 mm; D, F = 4 mm.
Fig. 3. Ocyale ghost Jocque M in A new species of Ocyale (Araneae, Lycosidae) from Madagascar, with first observations on the biology of a representative in the genus
Fig. 3. Ocyale ghost Jocque M. & Jocqué R. sp. nov. photographed at type locality. A. Female habitus. B. Same, detail. C. Female in sand retreat. D. Female with spiderlings on abdomen. E. Two males, one being eaten by the other. F. Female with white grasshopper prey. Photos A–B: MJ (2012), C–F: SW (2016).
Fig. 3 in Cranial phenotypic variation in Meriones crassus and M. libycus (Rodentia, Gerbillinae), and a morphological divergence in M. crassus from the Iranian Plateau and Mesopotamia (Western Zagros Mountains)
Fig. 3. Scatter plot of RW1 versus RW2 of the (A) ventral and (B) dorsal cranium of Meriones crassus Sundevall, 1842 and M. libycus Lichtenstein, 1823. Legends: ○ = M. crassus (other than Western Zagros), ● = M. crassus of Western Zagros, □ = M. libycus. Below: thin-plate spline deformation grids visualize shape variation as expressed by the first two RWs axes (grids represent shape difference between configurations corresponding to lowest and highest RW-values). For the numbering of landmarks, see Fig. 2.
Fig. 3. Begonia fluvialis M in Further discoveries in the ever-expanding genus Begonia (Begoniaceae): fifteen new species from Sumatra
Fig. 3. Begonia fluvialis M.Hughes sp. nov. A. Habit. B. Inflorescence in male phase. C. Two female flowers. D. Petiole apex showing three red bristles. All photographs from Batang Ayer Manjuto of the type Girmansyah et al. DEDEN1489. Scale bars on insets = 1 cm.
FIGURES 1 – 3. Mooreia spp., adults. 1, M in A replacement name for Flavala Behounek, Han & Kononenko, 2012 (Lepidoptera: Noctuidae: Pantheinae)
FIGURES 1 – 3. Mooreia spp., adults. 1, M. flavala, holotype; 2, M. crypta, holotype; 3, M. secunda, holotype.
Supplementary material 12: Collector dashboard: specimens collected by Y. M. Marusik from: Integrating and visualizing primary data from prospective and legacy taxonomic literature - Biodiversity Data Journal 3: e5063 (12 May 2015) https://doi.org/10.3897/BDJ.3.e5063
Dashboard charts showing only specimens collected by Y. M. Marusik. This page shows data from species-rank treatments. When viewed using a browser (such as Google Chrome) with an internet connection, this page sends a series of queries to Plazi and integrates the results with the Google Charts API to produce 37 interactive dashboard charts.
Abb. Ap1-Ap6:(Ap1) Parnassius phoebus (FABRICIUS, 1793). Populationstype 3♂♂ 3♀♀. Austria, Vorarlberg, Verwall, Zeinisjoch, 1820 m, div. Jahre, leg. Aistleitner. (Ap2) Parnassius phoebus styriacus ♂ FRUHSTORFER, 1851. Austria, Steirische Kalkalpen. (Ap3) Parnassius phoebus styriacus ♀ FRUHSTORFER, 1851. Austria, Steirische Kalkalpen. (Ap4) Rosenwurz (Rhodiola rosea). Larvalsubstrat von P. phoebus styriacus. (Ap5) Parnassius phoebus styriacus, Raupe, Austria, Stmk., Eisenerzer Alpen. (Ap6) Parnassius phoebus styriacus, Puppe, Austria, Stmk., Eisenerzer Alpen. Abb. Ap1 © Aistleitner,Abb.Ap2-Ap6 © Hatzenbichler. in Zur Chorologie und Faunistik der Tagfalter in den Ost- und Südalpen 1. Tagfalter (Papilionoidea) aus der Sammlung von Herbert Meier † sowie Daten aus den Sammlungen des Entomologischen Forschungsmuseums EFMEA in Feldkirch
Abb. Ap1-Ap6:(Ap1) Parnassius phoebus (FABRICIUS, 1793). Populationstype 3♂♂ 3♀♀. Austria, Vorarlberg, Verwall, Zeinisjoch, 1820 m, div. Jahre, leg. Aistleitner. (Ap2) Parnassius phoebus styriacus ♂ FRUHSTORFER, 1851. Austria, Steirische Kalkalpen. (Ap3) Parnassius phoebus styriacus ♀ FRUHSTORFER, 1851. Austria, Steirische Kalkalpen. (Ap4) Rosenwurz (Rhodiola rosea). Larvalsubstrat von P. phoebus styriacus. (Ap5) Parnassius phoebus styriacus, Raupe, Austria, Stmk., Eisenerzer Alpen. (Ap6) Parnassius phoebus styriacus, Puppe, Austria, Stmk., Eisenerzer Alpen. Abb. Ap1 © Aistleitner,Abb.Ap2-Ap6 © Hatzenbichler.
Fig. 3 in Trapdoor Spiders of the Genus Misgolas (Mygalomorphae: Idiopidae) in the Sydney Region, Australia, With Notes on Synonymies Attributed to M. rapax
Fig. 3. Misgolas gracilis. (A–D) Ƌ, AM KS22910. (A), right palp retrolateral. (B,C), right bulb: (B), dorsal; (C), prolateral. (D), venter. (E) Ƌ, AM KS34720, venter. (F,G) ♀, AM KS44339; (F), tarsus and metatarsus IV retrodorsal; (G), venter. (H,I) Ƌ, AM KS86211; (H), ventral aspect, palpal tibia excavation; (I), tibial excavation texture.
Figure 3 in A new bat species of the genus Myotis with comments on the phylogenetic placement of M. keaysi and M. pilosatibialis
Figure 3. Species tree inferred in *BEAST using multilocus sequence data for New World Myotis. Number under branches represent bayesian posterior probability values with conspecific populations from Ecuador and Panama shaded grey.
Figure 3 in New Species of Melinna (Melinnidae, Annelida) from the Australian Abyss with Comments on M. albicincta, M. cristata and M. elisabethae
Figure 3. Light microscopy images of Melinna hamulus sp. nov. (A) AM W.50366, dorsal view of anterior end showing positions of first neuro and notochaetae, in specimen stained with methyl blue. (B) AM W.50366, dorsal view of anterior end stained with methyl blue. Ellipsoid shows raised thoracic neuropodia. (b) AM W.53880, dorsal hook outlined to highlight shape. (C) AM W.50366, whole specimen, upperdorsal view stained with methyl blue, lowerventral view stained with methyl blue. (D) AM W.53257, abdomen, arrows indicate notopodia as small rounded projections. (E) AM W.50366, tube. (F) AM W.50366, ventral view anterior. (G) AM W.53257, thoracic uncini of segment 9. (H) AM W.50366, pygidium stained with methyl blue. Scale bars: A, 500 μm; B, C, F, 1 mm; b, H, 200 μm; E, 2 mm; G, 20 μm. Abbreviations: seg, segment; noto, notochaetae; neuro, neurochaetae; es, eyespots; bf, branchiae completely free; dm, dorsal membrane; dh, dorsal hooks; full noto, fully developed notopodia.
Figure 3 in Merluccius polli and M. senegalensis (Merlucciidae) as first records from the Canary Islands (north-eastern Atlantic), with morphology data
Figure 3. – Radiographs of M. senegalensis from the Canary Islands (TFMCBM-VP/01449, adult, 804 mm TL). Insert: Detail of five cervical vertebrae.
FIGURE 13 in DARIO R. FAUSTINO-FUSTER, JEISSON A. LÓPEZ-CASTAÑO, JHONATAN M. QUIÑONES & VANESSA MEZA-VARGAS (2024) Increasing the species diversity of the monotypic genus Pariolius Cope 1872 (Siluriformes: Heptapteridae) after more than 150 years. Zootaxa, 5433 (3): 389-403.
FIGURE 13. The most compressive Bayesian phylogenetic relationship of Heptapteridae based on coI. The circles nodes represent the Bayesian support (black circle = 1 and grey circle = 0.9). Species delimitations of Pariolius are represented by bar (black bar = morphological delimitation (MOR), red bar = general mixed yule coalescent (GMYC) and blue bar = poisson tree processes (PTP). ORI (Orinoco River) and AMA (Amazonas River).
FIGURE 9 in DARIO R. FAUSTINO-FUSTER, JEISSON A. LÓPEZ-CASTAÑO, JHONATAN M. QUIÑONES & VANESSA MEZA-VARGAS (2024) Increasing the species diversity of the monotypic genus Pariolius Cope 1872 (Siluriformes: Heptapteridae) after more than 150 years. Zootaxa, 5433 (3): 389-403.
FIGURE 9. Geographical distribution of Pariolius pax (yellow) and Pariolius maldonadoi (red) from Colombia. Star represents the type localities. Each symbol may represent more than one specimen.
FIGURE 7 in DARIO R. FAUSTINO-FUSTER, JEISSON A. LÓPEZ-CASTAÑO, JHONATAN M. QUIÑONES & VANESSA MEZA-VARGAS (2024) Increasing the species diversity of the monotypic genus Pariolius Cope 1872 (Siluriformes: Heptapteridae) after more than 150 years. Zootaxa, 5433 (3): 389-403.
FIGURE 7. Dorsal view of the branchial arch of (A) Pariolius pax, MPUJ 10047, paratype, 36.7 mm SL. (B) Pariolius maldonadoi, MPUJ 13076, paratype, 28.4 mm SL. Abbreviations of the anatomical parts: bb2-4 = basibranchial 2 a 4; cb 1-5 = ceratobranchial 1 to 5; eb1-4 = epibranchial 1 to 4; pb3-4 = pharyngo- branchial 3 to 4; hb1-3 = hypobranchial 1 to 3.
FIGURE 10 in DARIO R. FAUSTINO-FUSTER, JEISSON A. LÓPEZ-CASTAÑO, JHONATAN M. QUIÑONES & VANESSA MEZA-VARGAS (2024) Increasing the species diversity of the monotypic genus Pariolius Cope 1872 (Siluriformes: Heptapteridae) after more than 150 years. Zootaxa, 5433 (3): 389-403.
FIGURE 10. Pariolius maldonadoi, MHNU-I 3257, holotype, 32.6 mm SL, Potosí creek tributary to Inírida River, Guaviare State. (A) Lateral view. (B) Ventral view. (C) Dorsal view. Bar = 1 cm.
FIGURE 5 in DARIO R. FAUSTINO-FUSTER, JEISSON A. LÓPEZ-CASTAÑO, JHONATAN M. QUIÑONES & VANESSA MEZA-VARGAS (2024) Increasing the species diversity of the monotypic genus Pariolius Cope 1872 (Siluriformes: Heptapteridae) after more than 150 years. Zootaxa, 5433 (3): 389-403.
FIGURE 5. Dorsal view of the complex anterior vertebra of (A) Pariolius pax, MPUJ 10047, paratype, 34.0 mm SL and (B) Pariolius maldonadoi, MPUJ 13077, paratype, 27.3 mm SL. Abbreviations of the anatomical parts: scl = supracleithrum; tri = tripus; trp4 = transverse process 4; trp5: transverse process 5 and vc6: sixth vertebral centrum.
FIGURE 4 in DARIO R. FAUSTINO-FUSTER, JEISSON A. LÓPEZ-CASTAÑO, JHONATAN M. QUIÑONES & VANESSA MEZA-VARGAS (2024) Increasing the species diversity of the monotypic genus Pariolius Cope 1872 (Siluriformes: Heptapteridae) after more than 150 years. Zootaxa, 5433 (3): 389-403.
FIGURE 4. (A) Dorsal view and (B) Ventral view of cranium of Pariolius pax, MPUJ 10047, paratype, 34.0 mm SL. Abbreviations of the anatomical parts: afo = anterior fontanel; apa = autopalatine; boc: basioccipital; epo = epioccipital; exo = exoccipital; exs = extrascapula; fro = frontal; let = lateral ethmoid; max = maxilla; mes = mesethmoid; nas = nasal; opf: optic foramen; osp: orbitosphenoid; par: parasphenoid; pfo = posterior fontanel; pmx = premaxilla; pro: prootic; pto = pterotic; pts: pterosphenoid; soc = supraoccipital; and sph = sphenotic; tff: trigeminofacial foramen; vom = vomer.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
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