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12 results for “MIG-seq”
MIG-seq and molphometric datasets of the Gnamptogenys taivanensis group
<p>MIG-seq and molphometric dasatsets of the Gnamptogenys taivanensis group used in Nguyen et al. (2020).<br>Some errors in two csv files were corrected in this version at 2020-11-26.</p>
Fig. 9. Gastral tergite I and II in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 9. Gastral tergite I and II of the worker of the Gnamptogenys taivanensis group, in dorsal view. A, Lineage A, cf. G. taivanensis (Wheeler, 1929), colony Dai11iii17-295; B, Lineage B, cf. G. dentihumera Chen, Lattke et Zhou, 2017, Dai15iii18-731; C, Lineage C, cf. G. taivanensis (Wheeler, 1929), Eg21ix17-299; D, Lineage D, cf. G. coccina Zhou, 2001, Eg13v17-1255; E, Lineage E, cf. G. quadrutinodules Chen, Lattke et Zhou, 2017, Eg21ix17-310; F, Lineage G = G. sp. 7 of NDD, Dai15iii18-726.
Fig. 8 in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 8. Propodeum and petiole of the worker of the Gnamptogenys taivanensis group, in lateral view. A, Lineage A, cf. G. taivanensis (Wheeler, 1929), colony Dai11iii17-295; B, Lineage C, cf. G. taivanensis (Wheeler, 1929), Eg21ix17-299; C, Lineage D, cf. G. coccina Zhou, 2001, Eg13v17-1255; D, G. sp. 3 of NDD, Eg14v17-1287; E, Lineage E, cf. G. quadrutinodules Chen, Lattke et Zhou, 2017, Eg21ix17-310; F, Lineage G = G. sp. 7 of NDD, Dai15iii18-726.
Fig. 7 in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 7. Posterior declivity of propodeum of the worker of the Gnamptogenys taivanensis group, in posterior view. A, Lineage B, cf. G. dentihumera Chen, Lattke et Zhou, 2017, colony Dai15iii18-731; B, Lineage D, cf. G. coccina Zhou, 2001, Eg13v17-1255; C, Lineage F, cf. G. taivanensis (Wheeler, 1929), Eg13iii18-091; D, Lineage E, cf. G. quadrutinodules Chen, Lattke et Zhou, 2017, Eg21ix17-310.
Fig. 5 in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 5. Dendrogram of NC-Ward clustering based on 25 morphometric characters of the worker of Gnamptogenys taivanensis group. Association with MIG-seq lineages and singleton colonies are shown by coloured bars and letters. Black bars indicate clusters by NC-Kmeans clustering with K=8. Lineage A, cf. G. taivanensis (Wheeler, 1929); Lineage B, cf. G. dentihumera Chen, Lattke et Zhou, 2017; Lineage C, cf. G. taivanensis (Wheeler, 1929); Lineage D, cf. G. coccina Zhou, 2001; Lineage E, cf. G. quadrutinodules Chen, Lattke et Zhou, 2017; Lineage F, cf. G. taivanensis (Wheeler, 1929); Lineage G = G. sp. 7 of NDD.
Fig. 6 in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 6. Head of the worker of the Gnamptogenys taivanensis group, in lateral view. A, Lineage A, cf. G. taivanensis (Wheeler, 1929), colony Dai11iii17-295; B, Lineage B, cf. G. dentihumera Chen, Lattke et Zhou, 2017, Dai15iii18-731; C, Lineage C, cf. G. taivanensis (Wheeler, 1929), Eg21ix17-299; D, Lineage D, cf. G. coccina Zhou, 2001, Eg13v17-1255; E, Lineage E, cf. G. quadrutinodules Chen, Lattke et Zhou, 2017, Eg21ix17-310; F, Lineage G = G. sp. 7 of NDD, Dai15iii18-726.
Fig. 1 in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 1. Worker morphometric characters for the Gnamptogenys taivanensis group. Abbreviations of characters are given in Material and Methods. Yellow line indicates a primary baseline. Blue lines indicate secondary baselines that are parallel or vertical to the primary baseline. A, head in full-face view, with primary baseline passing the posteriormost points of vertex; B, head in lateral view, with primary baseline passing the posterodorsalmost part of mandibular insertion and the centre of eye; C, mesosoma in lateral view, with primary baseline passing the posteroventralmost corner of pronotum and the centre of propodeal spiracle; D, mesosoma in dorsal view, with primary baseline passing the midpoint of anterior margin of pronotum to the midpoint of a transverse line spanning the posteriormost points of metapleuron; E, petiole in lateral view, with primary baseline passing the petiolar spiracle and posterodorsal most corner of petiolar tergite; F, petiole and gaster in dorsal view, with primary baseline passing the anteriormost points of anterolateral corners of petiole; G, gaster in lateral view, with primary baseline passing the centre of the spiracle of gastral tergite I and the posteriormost point of tergo-sternal suture of the gastral segment I.
Fig. 4 in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 4. Bayesian (left) and Maximum likelihood (right) consensus phylogenetic trees inferred based on 569 bp of the mitochondrial COI gene. Outgroups are not shown. Associations with MIG-seq lineages and independent OTUs are shown by corresponding letters and colours beside colony code. Supports by ultrafast bootstrap (UB in %) or posterior probability (PP) are given beside the nodes.
Fig. 3 in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 3. Geographic distribution of the seven major lineages of the Gnamptogenys taivanensis group recovered by phylogenetic analyses based on the MIG-seq datasets. A, large-scaled distribution map with pie charts indicating the composition of lineages for each locality (numbers indicates the number of colonies); B small-scaled distribution pattern of each lineage in Tay Con Linh NR; C, small-scaled distribution pattern of each lineage in Hoang Lien Son NP. Lineage A, cf. G. taivanensis (Wheeler, 1929); Lineage B, cf. G. dentihumera Chen, Lattke et Zhou, 2017; Lineage C, cf. G. taivanensis (Wheeler, 1929); Lineage D, cf. G. coccina Zhou, 2001; Lineage E, cf. G. quadrutinodules Chen, Lattke et Zhou, 2017; Lineage F, cf. G. taivanensis (Wheeler, 1929); Lineage G = G. sp. 7 of NDD.
Fig. 2 in Genome-wide MIG-seq and morphometric data reveals heterospecificity of the Gnamptogenys taivanensis group (Hymenoptera: Formicidae: Ectatomminae) in the northern mountainous region of Vietnam
Fig. 2. Unrooted consensus phylogenetic trees of the Gnamptogenys taivanensis group inferred based on concatenated datasets of MIGseq loci generated by Stacks (left) and ipyrad (right). Branch lengths and topology are based on the Bayesian inference tree. Supports by ultrafast bootstrap (UB in %) and posterior probability (PP) are given beside the nodes. Lineage A, cf. G. taivanensis (Wheeler, 1929); Lineage B, cf. G. dentihumera Chen, Lattke et Zhou, 2017; Lineage C, cf. G. taivanensis (Wheeler, 1929); Lineage D, cf. G. coccina Zhou, 2001; Lineage E, cf. G. quadrutinodules Chen, Lattke et Zhou, 2017; Lineage F, cf. G. taivanensis (Wheeler, 1929); Lineage G = G. sp. 7 of NDD.
MIG-seq data of Rhopalomastix javana complex
<p>MIG-seq data of <i>Rhopalomastix javana</i> complex, used in Wang & Yamada (2023).</p><p><strong>Rhopalomastix_javana_MIG-seq_raw_reads.zip:</strong> raw demultiplexed reads (fastq) data obtained for 50 <i>Rhopalomastix </i>samples (including poor quolity samples which was ommited from analysis in the study).</p><p><strong>processed_MIG-seq_data_used_for_assembry.zip: </strong>processed (fastq) data of 38 samples used for de novo assembry by ipyrad and downstream analysis (after filtering out adapter sequences and pooling R1 and R2 reads for each sample).</p><p>Wang WY & Yamada A. 2023<strong>.</strong>Scrutinising an inscrutable bark-nesting ant: Exploring cryptic diversity in the<i> Rhopalomastix javana</i> (Hymenoptera: Formicidae) complex using DNA barcodes, genome-wide MIG-seq and geometric morphometrics. <i>PeerJ </i>11:e16416.</p>
Data supporting publication "Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut Microbiome"
<p>Data supporting publication "Metagenomic Immunoglobulin Sequencing (MIG-Seq) Exposes Patterns of IgA Antibody Binding in the Healthy Human Gut Microbiome"</p>
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