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85 results for “MSA”
Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
<p>Supporting data for AFProfile</p> <p>casp15.tar.zst - predicted structures and MSAs for the CASP15 set<br>native_afm_2_6_bench.tar.zst - native cif files for all complexes with ranking confidence <0.75 in the AFM 2-6 chains benchmark ( https://doi.org/10.1093/bioinformatics/btad424)<br>pred_top_models_afm_2_6_bench.tar.zst - predicted top ranked models and scores for all 100 samples.<br>afm_opt_metrics.csv - the best models, confidences and MMscores for the AFProfile run on the AFM 2-6 chains benchmark (n=427 structures)<br>msa_shapes.csv - the shape of the MSA as input to AFM for each structure<br>directed.tar.zst - contains all models for the AFProfile run on the AFM 2-6 chains benchmark (n=42700 samples)</p> <p>The directories are compressed with zstd: https://github.com/facebook/zstd<br>Uncompress:<br>tar --use-compress-program full/path/to/zstd -xvf file.tar.zst</p>
Particulate methylsulfonic acid (MSA), sodium and chloride concentrations from high-volume air filter samples over the Southern Ocean during austral summer of 2016/2017 on board the Antarctic Circumnavigation Expedition (ACE).
<p><strong>Dataset abstract</strong></p> <p>Aerosol particles come from a variety of sources: a look at the chemical composition gives insights on the particle origin. Ion chromatography was performed for aerosol particles smaller than 10 micrometers (PM10 inlet), giving concentrations of sodium and chloride, as well as particulate methylsulfonic acid (MSA). For this, aerosol particles where sampled on quartz fibre filters for 24 hours each. The sampled filters were stored at -20 degrees C on the research vessel, transported frozen back to the chemistry lab of TROPOS and analysed for main ions. Temporal coverage is from December 20, 2016 to March 20, 2017. We give 24-hour quality controlled particulate MSA, sodium and chloride concentrations in microgram per cubic meter for the Antarctic Circumnavigation Expedition (ACE) cruise over the Southern Ocean, as part of the ACE-SPACE project.</p> <p><strong>Dataset contents</strong></p> <ul> <li>ACESPACE_ particulate_MSA_Sodium_Chloride_PM10, data file, comma-separated values</li> <li>data_file_header, metadata, text format</li> <li>README.txt, metadata, text format</li> </ul>
BepiColombo/Mio MSA, MIA and MPO MAG Data During the second Venus Flyby
<p>This data set includes the DDEF of MSA and MIA data, and MPO-MAG data during the 2nd BepiColombo Mio's Venus flyby. The format of the files and the "one file per figure" was required by Nature Astronomy. To properly use these data, contacting the PI of the instruments and MSA team is highly recommended.</p>
Enhancing Microservice Reusability in MSA through the Reusable Microservices Framework: Development, Validation, and Evaluation
<p>The data of the paper: Enhancing Microservice Reusability in MSA through the Reusable Microservices Framework: Development, Validation, and Evaluation</p>
Progression Rate of MSA Under EGCG Supplementation as Anti-Aggregation-Approach
ClinicalTrials.gov study NCT02008721. IPD Sharing: Not stated. Countries: 1. Publications: 19.
Pairwise distance demarcation of species in the family Coronaviridae. a, Diagonal matrix of PPDs of 2,505 viruses clustered according to 49 coronavirus species, 39 established and 10 pending or tentative, and ordered from the most to least populous species, from left to right; green and white, PPDs smaller and larger than the inter-species threshold, respectively. Areas of the green squares along the diagonal are proportional to the virus sampling of the respective species, and virus prototypes of the five most sampled species are specified to the left; asterisks indicate species that include viruses whose intra-species PPDs crossed the inter-species threshold (threshold 'violators'). b, Maximal intra-species PPDs (x axis, linear scale) plotted against virus sampling (y axis, log scale) for 49 species (green dots) of the Coronaviridae. Indicated are the acronyms of virus prototypes of the seven most sampled species. Green and blue plot sections represent intra-species and intra-subgenera PPD ranges. The vertical black line indicates the inter-species threshold. c, Shown are the PDs of non-identical residues (y axis) for four viruses representing three major phylogenetic lineages (clades) of the species Severe acute respiratorysyndrome-related coronavirus (panel b) and all pairs of the 256 viruses of this species ('all pairs'). The PD values were derived from pairwise distances in the MSA that were calculated using an identity matrix. Panels a and b were adopted from the DEmARC v.1.4 output. in The species Severe acute respiratory syndromerelated coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
Pairwise distance demarcation of species in the family Coronaviridae. a, Diagonal matrix of PPDs of 2,505 viruses clustered according to 49 coronavirus species, 39 established and 10 pending or tentative, and ordered from the most to least populous species, from left to right; green and white, PPDs smaller and larger than the inter-species threshold, respectively. Areas of the green squares along the diagonal are proportional to the virus sampling of the respective species, and virus prototypes of the five most sampled species are specified to the left; asterisks indicate species that include viruses whose intra-species PPDs crossed the inter-species threshold (threshold 'violators'). b, Maximal intra-species PPDs (x axis, linear scale) plotted against virus sampling (y axis, log scale) for 49 species (green dots) of the Coronaviridae. Indicated are the acronyms of virus prototypes of the seven most sampled species. Green and blue plot sections represent intra-species and intra-subgenera PPD ranges. The vertical black line indicates the inter-species threshold. c, Shown are the PDs of non-identical residues (y axis) for four viruses representing three major phylogenetic lineages (clades) of the species Severe acute respiratorysyndrome-related coronavirus (panel b) and all pairs of the 256 viruses of this species ('all pairs'). The PD values were derived from pairwise distances in the MSA that were calculated using an identity matrix. Panels a and b were adopted from the DEmARC v.1.4 output.
MSA Dataset Used in NEFFy Analysis (CASP15 and rMSA targets)
<p>This dataset includes Multiple Sequence Alignments (MSAs):</p> <ul> <li><strong>CASP15 Protein Dataset</strong>: MSAs were created for 93 protein targets using the AlphaFold 2.3 code. </li> <li><strong>rMSA RNA Dataset</strong>: MSAs were generated for 361 RNA targets utilizing the rMSA pipeline. </li> </ul>
111329 MSA Hercules Child
This is a 3D model of a 20th c. statue by Platre in the Musée de Augustinis (Toulouse) depicting a young Hercules fighting off the snakes sent by Hera to kill the child. The sculpture is a modern representation of an ancient Greek myth, completed in the short time between World War I and World War II. **Bibliography**: [Musée de Augustinis](https://www.augustins.org/en/les-collections/sculptures/xix-debut-xxe/panorama-des-oeuvres/-/oeuvre/33533) #Ancient World 3D This model posting is part of Ancient World 3D, a project that provides curated 3D open access content for Classical Studies. Each model has an etched catalog# and [3D Printable frame](https://skfb.ly/6RY8U) for building a library. The [original model was posted by Musée des Augustins](https://mmf.io/o/111329). This entry was composed by Serena Hawkins (Dr. Elizabeth Thill, advisor). Source: Objaverse 1.0 / Sketchfab
BepiColombo/Mio MSA, MIA and MEA 2 Data during the third Mercury flyby
Open the record for dataset details and reuse information.
MSA-Limit
<p>Msa-limit is an analysis pipeline to test the efficiency of different multiple alignment software (MSA) on long reads. Using nanopore reads and a reference, it generates consensus sequences from the different MSA software to compare to the reference and see if the alignment is correct. (See the schematic in the doc file for more details)</p> <p>Usable MSA software: muscle,mafft,poa,kalign,spoa,kalign3,clustalo,abpoa,tcoffee</p>
Study Assessing Safety and Therapeutic Activity of AFFITOPE® PD01A and PD03A in Patients With Early MSA
ClinicalTrials.gov study NCT02270489. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Therapeutic Education for Multiple System Atrophy (MSA) Patients and Their Caregivers
ClinicalTrials.gov study NCT05819957. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Efficacy of L-threo DOPS on Orthostatic Hypotension Symptoms and Other Non-motor Symptoms in Patients With MSA
ClinicalTrials.gov study NCT02071459. IPD Sharing: NO. Countries: 1. Publications: 0.
[18F]-MFBG Versus [123I]-MIBG and [18F]-PE2I in PD vs. MSA and DLB vs. AD
ClinicalTrials.gov study NCT06120049. IPD Sharing: NO. Countries: 1. Publications: 1.
Clinical Trial to Assess Efficacy, Safety, and Tolerability of Rasagiline Mesylate 1 mg in Patients With Multiple System Atrophy of the Parkinsonian Subtype (MSA-P)
ClinicalTrials.gov study NCT00977665. IPD Sharing: Not stated. Countries: 12. Publications: 1.
Multiple Sequence Alignments (MSA) for comparative phylogeography of four lizard taxa within an Oceanic Island
Open the record for dataset details and reuse information.
GIS Shapefile - Counties, MSA - County boundaries within the BES Main Study Area.
County boundaries for the BES Metropolitan Study Area (MSA) derived from year 2000 GDT census data. This is the universal MSA boundary for all BES research. The MSA consists of the following 5 counties: Baltimore City, Baltimore County, Anne Arrundel, Carroll, Harford, and Howard. This is part of a collection of Baltimore Ecosystem Study metadata records that point to a geodatabase. The geodatabase itself is available online at beslter.org or lternet.edu. It is considerably large. Upon request, it can be shipped to you on media, such as a flash drive. The geodatabase is roughly 51.4 Gb in size, consisting of 4,914 files in 160 folders. Although this metadata record and the others like it are not rich with attributes, it is nonetheless made available because the data that it represents could be indeed useful.
GIS Shapefile - Long Term Sampling Grid, 100 Meters, Baltimore MSA - BES Main Study Area
Long term sampling framework for the Baltimore MSA comprised of contiguous 100 meter grid cells. Used for: telephone survey, field observation survey (observational and photo data), and key informant photo-documentation (text / narrative and photo data). A unique ID, 'GridCell', is used to establish the relationship between this layer and the field data. This is part of a collection of Baltimore Ecosystem Study metadata records that point to a geodatabase. The geodatabase itself is available online at beslter.org or lternet.edu. It is considerably large. Upon request, it can be shipped to you on media, such as a flash drive. The geodatabase is roughly 51.4 Gb in size, consisting of 4,914 files in 160 folders. Although this metadata record and the others like it are not rich with attributes, it is nonetheless made available because the data that it represents could be indeed useful.
GIS Shapefile - Long Term Sampling Grid, 300 Meters, Baltimore MSA - BES Main Study Area
Long term sampling framework for the Baltimore MSA comprised of contiguous 300 meter grid cells. Used for: telephone survey, field observation survey (observational and photo data), and key informant photo-documentation (text / narrative and photo data). A unique ID, 'GridCell', is used to establish the relationship between this layer and the field data. This is part of a collection of Baltimore Ecosystem Study metadata records that point to a geodatabase. The geodatabase itself is available online at beslter.org or lternet.edu. It is considerably large. Upon request, it can be shipped to you on media, such as a flash drive. The geodatabase is roughly 51.4 Gb in size, consisting of 4,914 files in 160 folders. Although this metadata record and the others like it are not rich with attributes, it is nonetheless made available because the data that it represents could be indeed useful.
GIS Shapefile - Counties, MSA - County boundaries within the BES Main Study Area.
County boundaries for the BES Metropolitan Study Area (MSA) derived from year 2000 GDT census data. This is the universal MSA boundary for all BES research. The MSA consists of the following 5 counties: Baltimore City, Baltimore County, Anne Arrundel, Carroll, Harford, and Howard. This is part of a collection of Baltimore Ecosystem Study metadata records that point to a geodatabase. The geodatabase itself is available online at beslter.org or lternet.edu. It is considerably large. Upon request, it can be shipped to you on media, such as a flash drive. The geodatabase is roughly 51.4 Gb in size, consisting of 4,914 files in 160 folders. Although this metadata record and the others like it are not rich with attributes, it is nonetheless made available because the data that it represents could be indeed useful.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.