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128 results for “Marine communities”
MCR LTER: Coral Reef: Community structure outdoor flume data in support of Edmunds 2019 Marine Biology
This dataset contains data in support of Edmunds, P.J., S.S. Doo, R.C. Carpenter, 'Changes in coral reef community structure in response to year-long incubations under contrasting pCO2 regimes', Marine Biology, 2019, doi:10.1007/s00227-019-3540-2. Here, the effects of ocean acidification (OA) on back reef communities from Mo'orea, French Polynesia (17.492S, 149.826W), were tested from 12 November 2015 to 16 November 2016 in outdoor flumes maintained at various mean pCO2 levels. Change in mass and percent cover were recorded monthly. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2018). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.
Data from: Climate drives the geography of marine consumption by changing predator communities
<p>The global distribution of primary production and consumption by humans (fisheries) is well-documented, but we have no map linking the central ecological process of consumption within food webs to temperature and other ecological drivers. Using standardized assays that span 105° of latitude on four continents, we show that rates of bait consumption by generalist predators in shallow marine ecosystems are tightly linked to both temperature and the composition of consumer assemblages. Unexpectedly, rates of consumption peaked at midlatitudes (25 to 35°) in both Northern and Southern Hemispheres across both seagrass and unvegetated sediment habitats. This pattern contrasts with terrestrial systems, where biotic interactions reportedly weaken away from the equator, but it parallels an emerging pattern of a subtropical peak in marine biodiversity. The higher consumption at midlatitudes was closely related to the type of consumers present, which explained rates of consumption better than consumer density, biomass, species diversity, or habitat. Indeed, the apparent effect of temperature on consumption was mostly driven by temperature-associated turnover in consumer community composition. Our findings reinforce the key influence of climate warming on altered species composition and highlight its implications for the functioning of Earth's ecosystems.</p>
Examining the diversity, stability and functioning of marine fish communities across a latitudinal gradient
<p><strong>Aim</strong>: As anthropogenic stressors on the biosphere intensify, understanding how communities respond to disturbances is critical. Biodiversity is often thought to promote the stability of communities over time and enhance ecosystem functioning. However, results have been inconsistent, and the multifaceted linkages among diversity, stability, and functioning under acute disturbances remain poorly understood. We experimentally tested the responses of marine fish communities to disturbance (i.e., acute habitat loss) across a diversity gradient spanning 35º degrees of latitude in the western Atlantic Ocean to assess the diversity-stability relationship and the interplay between diversity, stability, and fish biomass recovery (as a proxy for function) in marine fish communities.</p> <p><strong>Location</strong>: Western Atlantic Ocean (Maine, Massachusetts, North Carolina, Florida [USA], Belize, and Panama).</p> <p><strong>Time</strong> <strong>period</strong>: 2016 – 2017</p> <p><strong>Major taxa studied</strong>: Small, bottom-dwelling ('cryptobenthic') fishes</p> <p><strong>Results</strong>: Diversity showed a negative effect on community stability at both the regional (across docks) and local (within docks) scales. Similarly, local diversity was negatively correlated with ecosystem function. These effects are exacerbated by the habitat loss imposed via our experimental treatment.</p> <p><strong>Main</strong> <strong>conclusions</strong>: Our results suggest that habitat loss may more intensively re-shuffle diverse, tropical communities, which impacts biomass recovery, our proxy of functioning. Contrary to ecological theory, in small-bodied, benthos-associated vertebrate communities, biodiversity may neither promote stability nor functioning, suggesting that human disturbances may be particularly impactful in tropical, high-diversity ecosystems.</p>
Figure S4 in Spatiotemporal patterns in marine fish and cephalopods communities across scales: using an autoregressive spatiotemporal clustering model. A study of fish and cephalopods of the Eastern English Channel
Figure S4. – Spatial-temporal correlation matrix at a 782 km2 (A) and 1043 km2 (B) scale displaying correlation from strongly negative (dark blue) to strongly positive (dark red).
Figure S2 in Spatiotemporal patterns in marine fish and cephalopods communities across scales: using an autoregressive spatiotemporal clustering model. A study of fish and cephalopods of the Eastern English Channel
Figure S2. – Spatial hierarchical clustering at a 782 km2 (A) and 1043 km2 (B) scale. The rectangle outlines the communities that where find statistically significant by ASTEC given the approximately unbiased p-values expressed as proportion (red).
Figure 2 in Spatiotemporal patterns in marine fish and cephalopods communities across scales: using an autoregressive spatiotemporal clustering model. A study of fish and cephalopods of the Eastern English Channel
Figure 2. – Spatial correlation matrix at a 522 km2 scale displaying correlation from strongly negative (dark blue) to strongly positive (dark red).
Figure 11 in Spatiotemporal patterns in marine fish and cephalopods communities across scales: using an autoregressive spatiotemporal clustering model. A study of fish and cephalopods of the Eastern English Channel
Figure 11. – Scophthalmus rhombus from low (blue) to high (red) median densities of numbers/ km2 in log scale for 522 km2 for the Eastern English Channel.
Figure S5 in Spatiotemporal patterns in marine fish and cephalopods communities across scales: using an autoregressive spatiotemporal clustering model. A study of fish and cephalopods of the Eastern English Channel
Figure S5. – Spatial-temporal hierarchical clustering at a 782 km2 (A) and 1043 km2 (B) scale. The rectangle outlines the communities that where find statistically significant by ASTEC given the approximately unbiased p-values expressed as proportion (red).
Data and scripts for Predictable Ecological Response to Rising CO2 of a Community of Marine Phytoplankton
<p>Rising atmospheric CO<sub>2</sub> and ocean acidification are fundamentally altering conditions for life of all marine organisms, including phytoplankton. Differences in CO<sub>2</sub> related physiology between major phytoplankton taxa lead to differences in their ability to take up and utilise CO<sub>2</sub>. These differences may cause predictable shifts in the composition of marine phytoplankton communities in response to rising atmospheric CO<sub>2</sub>. We report an experiment in which 7 species of marine phytoplankton, belonging to 4 major taxonomic groups (cyanobacteria, chlorophytes, diatoms and coccolithophores) were grown at both ambient (500 µatm) and future (1000 µatm) CO<sub>2</sub> levels. These phytoplankton were grown as individual species, as cultures of pairs of species and as a community assemblage of all seven species in two culture regimes (high-nitrogen batch cultures and lower-nitrogen semi-continuous cultures, though not under nitrogen limitation). All phytoplankton species tested in this study increased their growth rates under elevated CO<sub>2</sub> independent of the culture regime. We also find that, despite species-specific variation in growth response to high CO<sub>2</sub>, the identity of major taxonomic groups provides a good prediction of changes in population growth and competitive ability under high CO<sub>2</sub>. The CO<sub>2</sub>-induced growth response is a good predictor of CO<sub>2</sub>-induced changes in competition (R<sup>2</sup>>0.93) and community composition (R<sup>2</sup>>0.73). This study suggests that it may be possible to infer how marine phytoplankton communities respond to rising CO<sub>2</sub> levels from the knowledge of the physiology of major taxonomic groups, but that these predictions may require further characterisation of these traits across a diversity of growth conditions. These findings must be validated in the context of limitation by other nutrients. Also, in natural communities of phytoplankton, numerous other factors that may all respond to changes in CO2, including nitrogen fixation, grazing and variation in the limiting resource will likely complicate this prediction.</p>
Microplastics effects on marine microbial communities and their functioning
<p><span>Microplastics pervade ocean ecosystems. Despite their effects on individuals or populations are well documented, the consequences of microplastics on ecosystem functioning, especially regarding lower trophic levels, are still largely unknown. Here we show how microplastics alter the structure and functioning of pelagic microbial ecosystems. Using experimental pelagic mesocosms, we found that microplastics indirectly affect marine productivity by changing the bacterial and phytoplankton assemblages. Specifically, the addition of microplastics increased phytoplankton biomass and shifted bacterial assemblages' composition. Such changes altered the interactions between heterotrophic and autotrophic microbes and the cycling of ammonia in the water column, which ultimately benefited photosynthetic efficiency. The effects of microplastics on marine productivity were consistent for different microplastic types. This study demonstrates that microplastics affect bacteria and phytoplankton communities and influence marine productivity, which ultimately alters the functioning of the whole ocean ecosystem.</span></p>
Structural and functional effects of global invasion pressure on benthic marine communities – patterns, challenges and priorities
<p>Here we present datasets underlying the results of the study examining patterns of structural and functional community-level change in a range of well-studied marine ecosystems with documented histories of bioinvasion. For the purpose of the study, the authors identified six regions with extensive bay-scale datasets on native and non-indigenous benthic species assemblages, allowing paired comparisons in time (years to decades; retrospective datasets) or space (high vs. low proximity to hotspots of NIS introductions within a region; cross-sectional datasets) representing differences in bioinvasion pressure (Table 1). These sites were: 1) coastal waters of British Columbia, Canada (BC); 2) San Francisco Bay, USA (SF); 3) Ilha Grande Bay, Brazil (BR); 4) North-Eastern Baltic Sea, Estonia (BS); 5) estuaries of New South Wales, Australia (AU) and 6) Waitematā Harbour, New Zealand (NZ). These six regions are generally at mid- to higher-latitudes, with one low-latitude site (BR). The study sites encompassed surveys of benthic communities: fouling assemblages (BC and AU), subtidal reefs (BR and BS), and soft-sediment benthos (SF, BS, and NZ).</p> <p>Three data files are provided for each study region and include:</p> <ul> <li>benthic community data (XX_species.csv)</li> <li>binary (0/1) biological trait information compiled for all species in the dataset (XX_traits.csv)</li> <li>additional explanatory variables considered for each study region - bioinvasion pressure and spatial variables (XX_env.csv)</li> </ul> <p>For detailed information on datasets and methods description please refer to the original manuscript by Zaiko et al.</p>
Examining the diversity, stability and functioning of marine fish communities across a latitudinal gradient
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Data from: Climate drives the geography of marine consumption by changing predator communities
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Data from: Marine heatwaves amplify benthic community metabolism and solute flux in a seafloor heating experiment
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Depth variation in benthic community response to repeated marine heatwaves on remote Central Indian Ocean reefs
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Microplastics effects on marine microbial communities and their functioning
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Mussel bed community data for: Intraspecific variation in a marine predator changes intertidal community through effects on a foundation species
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Data & R Scripts - Short and long-term effects of low-sulphur fuels on marine zooplankton communities
<p>Data and R scripts associated with "Short and long-term effects of low-sulphur fuels on marine zooplankton communities" https://doi.org/10.1016/j.aquatox.2020.105592 </p>
Data from: Indirect legacy effects of an extreme climactic event on a marine megafaunal community
While extreme climactic events (ECEs) are predicted to become more frequent, reliably predicting their impacts on consumers remains challenging– particularly for large consumers in marine environments. Many studies that do evaluate ECE effects focus primarily on direct effects, though indirect effects can be equally or more important. Here, we investigate the indirect impacts of the 2011 "Ningaloo Niño" marine heatwave ECE on a diverse megafauna community in Shark Bay, Western Australia. We use an 18 year community level dataset before (1998-2010) and after (2012-2015) the heatwave to assess the effects of seagrass loss on the abundance of seven consumer groups: sharks, sea snakes (multiple species), Indo-pacific bottlenose dolphins (Tursiops aduncus), dugongs (Dugong dugon), green turtles (Chelonia mydas), loggerhead turtles (Caretta caretta), and pied cormorants (Phalacrocorax spp.). We then assess whether seagrass loss influences patterns of habitat use by the latter five groups, which are under risk of shark predation. Sharks catch rates were dominated by the generalist tiger shark (Galeocerdo cuvier) and changed little, resulting in constant apex predator density despite heavy seagrass degradation. Abundances of most other consumers declined markedly as food and refuge resources vanished, with the exception of generalist loggerhead turtles. Several consumer groups significantly modified their habitat use patterns in response to the die-off, but only bottlenose dolphins did so in a manner suggestive of a change in risk-taking behavior. We show that ECEs can have strong indirect effects on megafauna populations and habitat use patterns in the marine environment, even when direct effects are minimal. Our results also show that indirect impacts are not uniform across taxa or trophic levels and suggest that generalist marine consumers are less susceptible to indirect effects of ECEs than specialists. Such non-uniform changes in populations and habitat use patterns have implications for community dynamics, such as the relative strength of direct predation and predation risk. Attempts to predict ecological impacts of ECEs should recognize that direct and indirect effects often operate through different pathways and that taxa can be strongly impacted by one even if resilient to the other.
Data from: An exotic species alters patterns of marine community development
Predictions of ecological patterns can be strengthened through replication of foundational studies under different environmental conditions to evaluate the consistency in their underlying processes. In this study, we replicated Sutherland and Karlson's 1977 classic ecology study that tested terrestrial paradigms of community development in a marine fouling community. The abundance patterns of marine fouling species were quantified on sequentially submerged settlement plates to investigate the effects of disturbance date on short- and long-term patterns of community development, and the original study's datasets were re-analyzed for comparison. In both studies, community structure was initially shaped by disturbance date due to monthly and annual variation in larval recruitment; however, the influence of disturbance date diminished over time. Despite these similarities, the underlying drivers of long-term patterns of community development have shifted substantially since the 1970′s. During the present study, an exotic tunicate, Clavelina oblonga, dominated plates over time and its dominance was associated with significant declines in species diversity. In contrast, the 1970s long-term community was characterized by a heterogeneous mixture of species that varied inter-annually, yielding increased species diversity over time. Continued observations of our settlement plates (2 years total) indicated that C. oblonga remains the dominant species in this community, suggesting that these findings are not the result of a single, novel recruitment event. These results highlight how an exotic species can alter patterns of community development and biodiversity. Moreover, this study demonstrates the need to replicate foundational ecological studies to evaluate community dynamics and underlying processes in light of ongoing ecosystem change.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.