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Code and data for "Global warming generates predictable extinctions of warm- and cold-water marine benthic invertebrates via thermal habitat loss"

<pre>This repository contains the following information: Datasets S1 to S4 can all be loaded, manipulated, and analysed in R using script provided in Data S5 to obtain the results of the paper, Reddin et al. 2022, "Global warming generates predictable extinctions of warm and cold-water marine benthic invertebrates via thermal habitat loss". Data S1. (separate file) The original downloaded PaleoDB dataset. Data S2. (separate file) The pre-prepared dataset of occurrences. Data S3. (separate file) The finished environmental dataset. Data S4. (separate file) Additional environmental dataset. Data S5. (separate file) The R-code for the main analysis. Data S6. (compressed directory) Output data and code from the simulations. Table S7 (separate file). List of data source publications for PaleoDB data used in our study. Listed are the data source author list (ref_author), year (ref_pubyr), and reference number as appears in the PaleoDB (reference_no). </pre>

Fig. 4 in The marine myxosporean Sigmomyxa sphaerica (Thélohan, 1895) gen. n., comb. n. (syn. Myxidium sphaericum) from garfish (Belone belone (L.)) uses the polychaete Nereis pelagica L. as invertebrate host

Fig. 4 Phylogenetic affinities of S. sphaerica among related members of the marine clade of Myxosporea. S. sphaerica is closest related to Ellipsomyxa spp., and these two genera represent a sister group to M. queenslandicus incertae sedis in a well-supported clade. Other Myxidium spp. in the marine clade are not closely related to S. sphaerica, including M. laticurvum (JN033229, new sequence) and M. bergense from the type host P. virens in Norway (JN033231, new sequence). All new sequences in bold. Clade support values: upper, MrBayes posterior probabilities (in percent); middle, maximum likelihood bootstrap (N=100) support values (Paup); lower, maximum parsimony (Mega)

Fig. 1 in The marine myxosporean Sigmomyxa sphaerica (Thélohan, 1895) gen. n., comb. n. (syn. Myxidium sphaericum) from garfish (Belone belone (L.)) uses the polychaete Nereis pelagica L. as invertebrate host

Fig. 1 Plasmodia and myxospores of S. sphaerica from the gallbladder of B. belone. a Plasmodium (flattened) without visible indication of sporogony, showing distinction between ecto- and endoplasm. b Sporulated plasmodium (flattened) showing spores in valvular view, vacuolate appearance and refractive granules. Note that any polar capsule lengths taken in valvular view may be erroneously short due to their oblique orientation in the spores. c Spore in sutural view. d, e Spores as seen in the focal plane of one polar capsule, showing polar filament coils and the valvular extensions associated with the protruding part of the capsules. Scale bars a, b 10 μm, c, d 5 μm

Fig. 3 in The marine myxosporean Sigmomyxa sphaerica (Thélohan, 1895) gen. n., comb. n. (syn. Myxidium sphaericum) from garfish (Belone belone (L.)) uses the polychaete Nereis pelagica L. as invertebrate host

Fig. 3 Actinospores of S. sphaerica in naturally infected N. pelagica from northern Øresund, Denmark. Interference contrast, to same scale. a Apical and lateral views of free actino-spores. b Lateral views showing the three nuclei of the shell valve cells (arrows) and the two nuclei of the sporoplasm cells (arrowheads). Scale bar 5 μm

Fig. 5 in The marine myxosporean Sigmomyxa sphaerica (Thélohan, 1895) gen. n., comb. n. (syn. Myxidium sphaericum) from garfish (Belone belone (L.)) uses the polychaete Nereis pelagica L. as invertebrate host

Fig. 5 Schematic illustration of the life cycle of S. sphaerica. The polychaete N. pelagica acts as the invertebrate hosts and the garfish B. belone acts as the fish hosts. a Actinospore, b myxospore. Not to scale

Fig. 33 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 33. Rarefaction curves of Cassian assemblages from Misurina Landslide, Lago Antorno (assemblages studied herein), Settsass Scharte (Nützel and Kaim 2014) and Stuores Wiesen (Hausmann and Nützel 2015). Only bulk samples are used.

Fig. 28 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 28. Cardiid bivalve Septocardia pichleri (Bittner, 1895) from Lago Antorno, northern Italy, Cassian Formation, Carnian, Upper Triassic. PZO 12866, in ventral (A1), dorsal (A2), and lateral (A3, A4) views.

Fig. 24 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 24. Stuoraxid gastropod Ampezzogyra angulata Nützel and Hausmann sp. nov. from Lago Antorno (A, C) and Misurina Landslide (B, D), Cassian Formation, northern Italy, Late Triassic. A. Paratype PZO 12848, in oblique lateral (A1), apical (A2), and apertural (A3) views; A4, detail teleoconch at adapical whorl angulation with micro-ornament of fine tubercles; A5, protoconch in oblique lateral view; A6, protoconch in apical view; A7, crossed lamellar shell structure. B. Paratype PZO 12733, in oblique lateral (B1), apical (B2), and apertural (B3) views. C. Holotype PZO 12847, in apical (C1), basal (C2), and apertural (C3) views; C4, detail of C3; C5, detail teleoconch with micro-ornament of fine tubercles; C6, protoconch in apical view; C7, protoconch in oblique view. D. Paratype PZO 12734, in apical (D1) and apertural (D2) views.

Fig. 23. Hyalogyrinid gastropod Alexogyra marshalli Bandel, 1996 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 23. Hyalogyrinid gastropod Alexogyra marshalli Bandel, 1996 from Lago Antorno, northern Italy, Cassian Formation, Carnian, Upper Triassic. A. PZO 12842, in apical view. B. PZO 12843, in apertural view. C. PZO 12844, protoconch in oblique lateral view. D. PZO 12845, in oblique apertural view to show base.

Fig. 20 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 20. Mathildid gastropod Jurilda elongata (Leonardi and Fiscon, 1959) from Misurina Landslide, northern Italy, Cassian Formation, Carnian, Upper Triassic. A. PZO 12716, in lateral view (A1), A2, early whorls including heterostrophic protoconch, in lateral view. B. PZO 12717, in apical (B1) and lateral (B2) views; B3, early whorls including heterostrophic protoconch, in lateral view. C. PZO 12718, in apertural (C1) and oblique basal (C2) views. D. PZO 12719, in lateral (D1) and oblique basal (D2) views. E. PZO 12720, detail teleoconch whorl, in lateral view.

Fig. 16 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 16. Protorculid gastropods from Lago Antorno (A–D) and Misurina Landslide (E), northern Italy, Cassian Formation, Carnian, Upper Triassic. A. Atorcula sp., PZO 12816, in lateral view with drill holes (A1), A2, close up showing incomplete drill hole (right) and complete one (left). B. Atorcula sp., PZO 12817, in lateral view (B1), B2, close up showing drill hole. C. Atorcula canalifera (Münster, 1841), PZO 12819, in apertural view. D. Atorcula canalifera (Münster, 1841), PZO 12888, in apertural view. E. Atorcula canalifera (Münster, 1841), PZO 12697, axially ribbed larval shell and first smooth teleoconch whorls, in lateral view.

Fig. 13 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 13. Coelostylinid gastropods Helenostylina convexa (Nützel and Kaim, 2014) from Lago Antorno (A, B, C), Misurina Skilift (D), and Misurina Landslide (E), northern Italy, Cassian Formation, Carnian, Upper Triassic. A. PZO 12812, relatively large specimen with well-preserved base with spiral ribs, in apertural view (A1); A2, early whorls in lateral view; A3, basal view showing spiral ribs; A4, oblique basal view showing spiral ribs on base. B. PZO 12813, relatively large specimen with spiral ribs on base and protoconch with tubercles, in apertural view (B1); B2, close up of base showing spiral ribs on base; B3, early whorls with tubercles on larval shell, in lateral view. C. PZO 12814, juvenile shell with tubercles on larval shell, in lateral view. D. PZO 12694, juvenile shell with tubercles on larval shell and healed shell fracture, in apertural (D1) and lateral (D2, D4) views; details showing end of larval shell (arrows), in lateral (D3) and apical (D5) views. E. PZO 12695, relatively large specimen with well-preserved base with spiral ribs and protoconch with tubercles, in apertural view (E1); E2, oblique apertural view to show base with spiral ribs; E3, protoconch in lateral view.

Fig. 12 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 12. Caenogastropods from Lago Antorno (A) and Misurina Landslide (B–F), northern Italy, Cassian Formation, Carnian, Upper Triassic. A. Unidentified caenogastropod, PZO 12829, in lateral view. B. Coelostylina sp. 1, PZO 12691, in apertural view. C. Coelostylina sp. 2, PZO 12692, in lateral view. D. Flemingella bistriata (Münster, 1841), PZO 12713, in apertural view. E. Coelochrysalis pupaeformis (Münster, 1841), PZO 12714, in lateral view, with constriction of last whorl. F. Coelochrysalis pupaeformis (Münster, 1841), PZO 12715, deformed specimen in lateral view, showing constriction of last whorl.

Fig. 10 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 10. Coelostylinid gastropod Coelostylina conica (Münster, 1841) from Lago Antorno (A–D) and Misurina Landslide (E, F), northern Italy, Cassian Formation, Carnian, Late Triassic. A. PZO 12803, in apertural (A1) and abapertural (A2) views; A3, spire whorls in lateral view; A4, close up of spire whorl showing faint spirally arranged micro-pits; A5, close up of apical whorls in lateral view. B. PZO 12804 in apertural view. C. PZO 12805, with drill hole, in apertural view (C1); C2, early whorls including protoconch, in lateral view. D. PZO 12806, in lateral view (D1); D2, early whorls including protoconch, in lateral view; D3, whorl detail with boring. E. PZO 12686, in apertural view. F. PZO 12687, with drill hole in apertural view (F1); F2, detail, in apertural view.

Fig. 7 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 7. Naticopsid gastropod Hologyra? expansa (Laube, 1869), PZO 12802, from Lago Antorno, northern Italy, Cassian Formation, Carnian, Upper Triassic; apertural view showing callus on inner and parietal lip.

Fig. 6 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 6. Turbinid? gastropod "Turbo" sp., PZO 12740, from Misurina Landslide, northern Italy, Cassian Formation, Carnian, Upper Triassic. In apertural (A1) and lateral (A2), and apical (A3) views; A4, early whorls in lateral view.

Fig. 32 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 32. Trace fossils (taxonomic assignment unknown) from Misurina Landslide, northern Italy, Cassian Formation, Carnian, Upper Triassic. A. PZO 12822. B. PZO 12876. C. PZO 12877.

Fig. 5. Trochonematid gastropod Eunema badioticum Kittl, 1891, PZO 12796 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 5. Trochonematid gastropod Eunema badioticum Kittl, 1891, PZO 12796, from Lago Antorno, northern Italy, Cassian Formation, Carnian, Upper Triassic. In apertural (A1) and lateral (A2, A3) views; A4, detail of last whorl showing fine ornamentation including pits on upper angulation, in lateral view.

Fig. 17 in Palaeoecology of tropical marine invertebrate assemblages from the Late Triassic of Misurina, Dolomites, Italy

Fig. 17. Zygopleurid gastropods from Lago Antorno (A–C) and Misurina Landslide (D–H), northern Italy, Cassian Formation, Carnian, Upper Triassic. A. Ampezzopleura hybridopsis Nützel, 1998, PZO 12831, axially ribbed larval shell and 3 teleoconch whorls, in lateral view. B. Ampezzopleura hybridopsis Nützel, 1998, PZO 12832, axially ribbed larval shell and 1 teleoconch whorl, in lateral view (B1), B2, last whorl axial ribs reduced to subsutural nodes, in lateral view; B3, earliest whorls smooth, then strong axial ribs, in lateral view. C. Ampezzopleura hybridopsis Nützel, 1998, PZO 12833, axially ribbed larval shell. D. Ampezzopleura hybridopsis Nützel, 1998, PZO 12705, axially ribbed larval shell and 2 teleoconch whorls, in apertural (D1), lateral (D2), and apical D3) views. E. Ampezzopleura hybridopsis Nützel, 1998, PZO 12706, teleoconch. F. Ampezzopleurahybridopsis Nützel, 1998, PZO 12707, axially ribbed larval shell and 3 teleoconch whorls, in lateral view (F1), F2, protoconch in lateral view, axial ribs of larval shell reduced to subsutural nodes on last whorl; F3, protoconch in lateral view, axial ribs of larval shell reduced to subsutural nodes and teleoconch ribs begin to appaer on last whorl. G. Ampezzopleura hybridopsis Nützel, 1998, PZO 12708, axially ribbed larval shell and 4 teleoconch whorls, in lateral view. H. Ampezzopleura bandeli Nützel, 1998, PZO 12703, protoconch and ca. 4 teleoconch whorls.