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67 results for “Martini”
Martini Ecco (e1049)
<b>-- <a href="https://doi.org/10.5281/zenodo.11582199">Documentation</a> --</b><br><br><u>Name</u>: Martini Ecco<br><u>musiXplora-ID</u>: e1049<br><u>musiXplora-URI</u>: <a href="https://musixplora.de/mxp/e1049">https://musixplora.de/mxp/e1049</a><br><u>Gender</u>: m<br><u>First Mentioned</u>: 1608<br><u>Sectors</u>: Instrumentenbau<br><u>Professions (Musical)</u>: Lautenmacher<br><u>Other Places of Activity</u>: Rom<br><br><br><u>Titel/Medien:</u><br><table><tbody><tr><th>Role</th><th>Sigel</th><th>Title</th><th>mXp-ID</th></tr><tr><td>Related</td><td>Kirsch 2023</td><td>The Long Lives of Old Lutes. The Cultural and Material History of the Veneration of Old Musical Instruments. Dissertation der Universität Leipzig 2022. . Erschienen als Enhanced Publication. LM-enc Band 2. Schriftenreihe der Forschungsstelle DIGITAL ORGANOLOGY am Musikinstrumentenmuseum der Universität Leipzig. herausgegeben von Josef Focht</td><td><a href="https://musixplora.de/mxp/5034090">5034090</a></td></tr></tbody></table><br><u>Ereignisse:</u><br><table><tbody><tr><th>Role</th><th>Sigel</th><th>Title</th><th>mXp-ID</th></tr><tr><td>Hersteller</td><td></td><td>Herstellung</td><td><a href="https://musixplora.de/mxp/6017203">6017203</a></td></tr></tbody></table><br><br><u>Changelog</u>:<br> - v0.0.1: Initial Upload.<br>
Input Files for Peptide Translocation Across Phospholipid Membranes Using Various Collective Variables and Martini Coarse-Grained Simulations
<p>Input files for publication: Ivo Kabelka, Radim Brožek, and Robert Vácha: Selecting Collective Variables and Free Energy Methods for Peptide Translocation Across Membranes, Journal of Chemical Information and Modeling, submitted</p>
Fig. 4. Neofoleyellides martini n in Two new species of Neofoleyellides (Nematoda: Onchocercidae) parasitising anuran amphibians in South Africa
Fig. 4. Neofoleyellides martini n. sp. from Leptopelis natalensis (Smith, 1849), line drawings. A – fragment of body at anterior end, female, lateral view; B – fragment of body at anterior end, male, lateral view; C – anterior extremity, female, lateral view; D–F – anterior extremity, female, apical view, optical sections at different depth of focus; G – posterior end of body, male, ventral view; H – microfilaria; I – posterior end of body, female, lateral view; J – spicules, lateral view.
Fig. 6. Neofoleyellides martini n in Two new species of Neofoleyellides (Nematoda: Onchocercidae) parasitising anuran amphibians in South Africa
Fig. 6. Neofoleyellides martini n. sp. from Leptopelis natalensis (Smith, 1849), photomicrographs. A – transverse section at posterior end of body, male, a – ala; B – area rugosa.
Fig. 5. Neofoleyellides martini n in Two new species of Neofoleyellides (Nematoda: Onchocercidae) parasitising anuran amphibians in South Africa
Fig. 5. Neofoleyellides martini n. sp. from Leptopelis natalensis (Smith, 1849), line drawings. A–D – posterior end of body, male, ventral view, variations of the arrangements of caudal papillae.
Martini water froze at 303 K
<p>While doing some testing with Gromacs 2016 rc1, I managed to freeze Martini water boxes of 400 beads at 303.15 K; this happened with two independent initial configurations.</p> <p>I used the Martini Straight parameters. The simulation files, including trajectories (freezing occurs at 400 ns in system 1, at 325 ns in system 2), are available in this repository.</p>
Spidroin Martini Coarse grain and atomistic simulation results
<p>The pdb files contained in this zip archive are the outputs of our simulations of the pre-spun silk proteins (MaSp1 and MaSp2) found in Black Widow silk dope. We used a combination of Martini V2.6 Martini 3.0 coarse grain, Alphafold, and Charmm36 atomistic simulations. </p>
Henry Martini Rifle
Henry Martini rifle for a game project I'm very excited to be a part of, links for the ArtStation post and the project GIthub are down bellow. Feel o use it on your projects! https://www.artstation.com/artwork/ArnnYV https://github.com/Mooses2k/SecretHistories This model is a retopology and retexture of this one https://sketchfab.com/3d-models/martini-henry-5239f3e1bfa5482eb1f387a2fec37fef Source: Objaverse 1.0 / Sketchfab
Scaling protein-water interactions in the Martini 3 coarse-grained force field to simulate transmembrane helix dimers in different lipid environments
<p>This dataset contains molecular dynamics (MD) trajectories used for preparation of the following manuscript: <br> "Scaling protein-water interactions in the Martini 3 coarse-grained force field to simulate transmembrane helix dimers in different lipid environments". </p>
Capturing chemical reactions inside biomolecular condensates with reactive Martini simulations
<p>Supporting data for publication "Capturing chemical reactions inside biomolecular condensates with reactive Martini simulations". Contains initial and final simulation snapshots of each simulation condition, and the cluster analysis used to determine the macrocycle size.</p> <p> </p>
ELF3 prion-like domain Martini clustering simulations
<p>This dataset contains Martini coarse-grain simulations of ELF3-PrD, with each simulation containing 100 PrD monomers. These trajectories were created as part of a publication exploring the temperature-responsive condensation of the ELF3-PrD in the scientific pulication titled, "Molecular dynamics simulations illuminate the role of sequence context in the ELF3-PrD-based temperature sensing mechanism in plants." Included are trajectories for ELF3-PrD variants including wildtype (7 glutamine-long polyQ tract), 0Q (variable poly-glutamine tract removed), 19Q (polyQ tract extenden to 19 glutamine residues) and the F527A mutant. Each variant includes trajectories at 290K, 300K, 320K and 405K. There are three replicates for each condition, except for wildtype 300K and 19Q 340K, of which two replicates are provided.</p>
Confocal data of Sphaerius martini and Crowsonaerius minutus
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices for holotypes of <em>Sphaerius martini</em> (NIGP178177) and <em>Crowsonaerius minutus</em> (NIGP178178). This dataset is associated with the publication "New fossils of Sphaeriusidae from mid-Cretaceous Burmese amber revealed by confocal microscopy (Coleoptera: Myxophaga)" (DOI:10.3389/feart.2022.901573).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p>
MD simulations of the Sec61/TRAP complex with the Martini 3 force field
<p>Simulation data for the Sec61/TRAP complex, the Sec61 complex, and the TRAP complex in a POPC membrane. Simulations are performed using GROMACS and with the coarse-grained Martini 3 force fields. The proteins are kept restrained in the simulations. The uploaded trajectories (xtc) contain the coordinates stored every 10 ns of the 20-µs-long simulations. The output energy files (edr), run input files (tpr), and the continue points (cpt) at 20 µs are provided. </p> <p>All required input files are also provided to regenerate the run input files: initial structures (gro), index files (ndx), topologies (top and itp), and the common simulation parameter file (mdp). Details of the setup, simulation, and analysis of the systems is available in the preprint:</p> <p>https://doi.org/10.1101/2022.09.30.510141</p>
FIGURES 10–14. Parabomis martini Lessert, 1919. 10 in Revision of the Afrotropical crab-spider genus Parabomis Kulczyński, 1901 (Araneae: Thomisidae)
FIGURES 10–14. Parabomis martini Lessert, 1919. 10 Male habitus, dorsal view; 11 Female habitus, dorsal view; 12 Left male palp, ventral view; 13 Epigyne, ventral view; 14 Epigyne, dorsal view. Scales: 1 mm.
FIGURES 10–16 in Belostoma martini (Montandon): description of the instars and redescription of the adult (Hemiptera: Belostomatidae)
FIGURES 10–16. Belostoma martini instars: Dorsal views showing body shape, head, and forewing pads development. First instar, 10: body shape, 11: head, lateral view. Second instar, 12: body shape. Third instar, 13: body shape, 14, head, lateral view. Fourth instar, 15: body shape. Fifth instar, 16: body shape.
FIGURES 2–9. Belostoma martini adult stage, 2 in Belostoma martini (Montandon): description of the instars and redescription of the adult (Hemiptera: Belostomatidae)
FIGURES 2–9. Belostoma martini adult stage, 2) body shape, 3) head dorsal view, 4) head lateral view, 5) thoracic sclerites, 6) abdominal pilosity (7–9) male genitalia 7) dorsal, 8) ventral, and 9) lateral view).
FIGURE 8. Ancistrus martini INHS 35367 specimen, 73.2 in Trans-Andean Ancistrus (Siluriformes: Loricariidae)
FIGURE 8. Ancistrus martini INHS 35367 specimen, 73.2 mm SL, Taguara Creek, Santa Ana River drainage, Lake Maracaibo Basin, 51 mm SL. Photograph by Nathan K. Lujan.
FIGURE 1 in Cyrtodactylus martini, another new karst-dwelling Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Northwestern Vietnam
FIGURE 1. Map showing the type locality (black dot) of Cyrtodactylus martini sp. nov. in northwestern Vietnam.
Martini 2 and Martini 3 simulations of DOPE/DOPC mixtures
<p>Martini simulations of DOPE/DOPC lipid mixtures from 0% to 100% in increments of 10%. Performed with GROMACS.</p>
Supporting data for transmembrane domain self association simulations in "Recalibration of protein interactions in Martini 3"
<p>This repository contains the data of transmembrane helix self-association simulation from "Recalibration of protein interactions in Martini 3". Simulations were run with the Martini 3.0 force field, along with two modified versions of Martini 3.0 in which the well-depth, ε, in the Lennard-Jones potential between all protein and water beads was rescaled by a factor <em>λ</em><sub>PW</sub>, ε in the Lennard-Jones potential between all protein beads was rescaled by a factor <em>λ</em><sub>PP</sub>. The simulation files are kept in one single zip file, which contains trajectories for two protein EphA1 and ErbB1 systems with three versions of force fields. The trajectory files are in xtc format, and are accompanied by a structure in pdb format for system topology and a tpr file to start the simulation. In each version of force field for each protein, name of the files corresponds to that specific umbrella sampling window. Umbrella sampling windows ranges from 0.6 nm to 3.4 nm with a spacing of 0.2 nm. </p>
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