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ShareScore release 0.9.0
Dataset results
42 results for “Metabolic engineering”
Raw data to accompany the manuscript 'Data for Engineering Lipid Metabolism of Chinese Hamster Ovary (CHO) Cells for Enhanced Recombinant Protein Production' published in the Journal Data in Brief
<p>This repository consists of the raw western blot, microscopy and mass spectrometry data to accompany the manuscript 'Data for Engineering Lipid Metabolism of Chinese Hamster Ovary (CHO) Cells for Enhanced Recombinant Protein Production' published in the Journal Data in Brief and associated with the article '<a href="https://www.ncbi.nlm.nih.gov/pubmed/31805379">Engineering of Chinese hamster ovary cell lipid metabolism results in an expanded ER and enhanced recombinant biotherapeutic protein production</a>' published in the journal Metabolic Engineering (see DOI: 10.1016/j.ymben.2019.11.007). </p> <p>The western blot raw file is associated with Figure 1a and 1b of the Data in Brief manuscript.</p> <p>The confocal microscopy raw image files (x3) are associated with Figure 1c of the Data in Brief manuscript.</p> <p>The mass spectrometry files are the raw data that refers to the samples presented in Figure 5 of the Data in Brief manuscript. Files are labelled as in the Data in Brief and Metabolic Engineering manuscripts. The file name structures is as follows;</p> <p>CHO-Controlpoolai</p> <p>Where 'a' represents replicate 'a' of three biological replicates and 'i' refers to mass spectrometry technical analysis 1 of 3 technical analyses of each replicate (thus for each cell pool or line there are three biological replicates that are each analysed in triplicate such that there are 9 raw mass spectrometry files for each cell pool or line).</p> <p>All the mass spectrometry files are found in the compressed (zip) file named mass_spectrometry_raw_files_archive.zip</p>
Dataset - Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies
<p>Models developed for the manuscript “Large-scale kinetic metabolic models of<em> Pseudomonas putida</em> for consistent design of metabolic engineering strategies" by M. Tokic, V. Hatzimanikatis, and L. Miskovic.</p> <ul> <li>Thermodynamically curated and gap-filled genome-scale model of <em>P. putida</em> iJN1411, iJN1411cur. <ul> <li>CuratediJN1411GEM.mat</li> </ul> </li> <li>Three systematically reduced stoichiometric models of <em>P. putida</em>: <ul> <li>D1 model, RedModelD1SminP2.mat</li> <li>D2 model, RedModelD2SminP2.mat - used for the studies performed in the manuscript</li> <li>D3 model, RedModelD3SminP2.mat</li> </ul> </li> </ul> <p> </p>
Metabolic Engineering of Doxorubicin Biosynthesis: Advancing P450 Catalysis through Redox Partner Optimization and Structural Analysis of DoxA
GEO Series GSE289319. Streptomyces peucetius. 36 samples. Type: Expression profiling by high throughput sequencing.
Engineering glucose metabolism for enhanced muconic acid production in Pseudomonas putida KT2440
GEO Series GSE198795. Pseudomonas putida KT2440. 9 samples. Type: Expression profiling by high throughput sequencing.
Metabolic Engineering of Squalene Biosynthesis via Different Genomes Impacts Non-target Cellular Metabolomic and Transcriptomic Pathways
GEO Series GSE74103. Nicotiana tabacum. 8 samples. Type: Expression profiling by high throughput sequencing.
A versatile CRISPR/Cas13d platform for multiplexed transcriptomic regulation and metabolic engineering in primary human T cells
GEO Series GSE246823. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
Metabolic engineering of Corynebacterium glutamicum for L-arginine production
GEO Series GSE52737. Corynebacterium glutamicum; Corynebacterium glutamicum ATCC 13032. 4 samples. Type: Expression profiling by array.
Reprogramming of primary metabolism facilitates metabolic engineering of bioactives in tomato fruit
GEO Series GSE61014. Solanum lycopersicum. 17 samples. Type: Expression profiling by high throughput sequencing.
Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization
GEO Series GSE226017. Homo sapiens. 27 samples. Type: Other; Expression profiling by high throughput sequencing.
Metabolic engineering reveals the relative importance of different sugar catabolic pathways during growth of Aspergillus niger on plant biomass
GEO Series GSE196397. Aspergillus niger. 84 samples. Type: Expression profiling by high throughput sequencing.
Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization [MED12_G44N_2D_RNA_seq]
GEO Series GSE226014. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Microparticles enhance the formation of seven major classes of natural products in native and metabolically engineered actinobacteria through accelerated morphological development.
GEO Series GSE168044. Streptomyces lividans. 18 samples. Type: Expression profiling by high throughput sequencing.
A comprehensive evaluation of metabolically engineered Cynara cardunculus calli as platform for valuable fatty acid derivatives production
GEO Series GSE284690. Cynara cardunculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Improved Fermentative Production of Gamma-Aminobutyric Acid via the Putrescine Route: Systems Metabolic Engineering for Production From Glucose, Amino Sugars, and Xylose
GEO Series GSE81695. Corynebacterium glutamicum; Corynebacterium glutamicum ATCC 13032. 3 samples. Type: Expression profiling by array.
Towards improving oil composition and content in oat through metabolic engineering
GEO Series GSE249079. Avena sativa. 12 samples. Type: Expression profiling by high throughput sequencing.
Systems metabolic engineering of Streptomyces albus for advanced production of the reverse antibiotic nybomycin
GEO Series GSE240471. Streptomyces albidoflavus. 45 samples. Type: Expression profiling by high throughput sequencing.
Restoration and reinforcement of acclimatizing responses during the adaptation of an unfit, metabolically engineered strain
GEO Series GSE42116. Methylorubrum extorquens AM1. 30 samples. Type: Expression profiling by array.
Provitamin A-enriched Golden Cassava generated through metabolic engineering has reduced dry matter, elevated oil content and enhanced shelf-life
GEO Series GSE100319. Manihot esculenta. 9 samples. Type: Expression profiling by high throughput sequencing.
Valorization of seaweed hydrolysate for production of the high-value reverse antibiotic nybomycin using metabolically engineered Streptomyces explomaris
GEO Series GSE291039. Streptomyces sp. Je 1-4 4N24. 24 samples. Type: Expression profiling by high throughput sequencing.
Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization [MED12_G44N_spheroid_RNA_seq]
GEO Series GSE226016. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
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International Brain Laboratory public data
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OpenNeuro
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