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15 results for “Molecular structural analysis”
Structural and Molecular Analysis of Adult Mouse Astrocytes and Vascular Connectivity in the Cortex and Hippocampus
<p>After image acquisition (0-RAW_CL230331_E2_serie1) and deconvolution (1-Deconvolved_CL230331_E2_serie1) using confocal microscopy and the SVI Huygens software,respectively, the image processing was conducted using Imaris, Fiji, and Matlab software. This process involved a sequence of manual operations (2-Imaris_surfaces_CL230331_E2_serie1) and custom Groovy scripts (5-Groovy scripts).</p> <p>The dataset analysis (3-Imaris_final_CL230331_E2_serie1_ims) allowed for a deeper investigation of morphological and molecular properties of adult mouse astrocytes (4-Image analysis_CL230331_E2_serie1) in two brain regions, the Isocortex and the Hippocampus, known to be interconnected to support multiple cognitive functions.</p>
Data and code for behavioral analysis of: Structural and Molecular Properties of Insect Type II Motor Axon Terminals.
<p>Data and code for behavioral analysis of: Structural and Molecular Properties of Insect Type II Motor Axon Terminals.</p> <p>v1.2: typos corrected and all files available in a single .zip file for download</p>
Molecular dynamics trajectories, GROMACS input files, and analysis code from "Rational optimization of a transcription factor activation domain inhibitor" by Basu et. al, Nature Structural & Molecular Biology, 2023
<p>Molecular dynamics trajectories, GROMACS input files, and analysis code from "Rational optimization of a transcription factor activation domain inhibitor" by Basu et. al, Nature Structural & Molecular Biology, 2023</p> <p> </p> <p> </p>
Arthropod food webs in the foreland of a retreating Greenland glacier: Integrating molecular gut content analysis with Structural Equation Modelling
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Molecular dynamics analysis of iPP-polymorphs; a dataset of alpha and beta atomic structures
<p>This is the dataset corresponding to the publication in the <em>Polymer </em>journal:</p> <p>"Molecular dynamics analysis of iPP-polymorphs; Investigating thermal expansion and elastic properties"</p> <p>Authors:<strong> H.N. Chávez Thielemann, J.A.W. van Dommelen, L.E. Govaert, M. Hütter</strong></p> <p>Year: 2024</p> <p> </p> <p>The dataset presented here provides the chemical structures of iPP crystals, including COMPASS forcefield parameters, as follows:</p> <p>α structures were obtained by repeating the crystalline unit cell 4 times in a, 2 times in b, and 4 times in c (comprising 32 chains and 3456 atoms)</p> <ul> <li><strong><a href="https://zenodo.org/records/14048060/files/alpha2.zip?download=1">alpha2.zip</a>: </strong>α2 is the unit cell with perfect up-down alternation.</li> <li><a href="https://zenodo.org/records/14048060/files/alpha1.zip?download=1"><strong>alpha1.zip</strong></a>: α1 is an α2 but with 50% random up-down alternation.</li> </ul> <p>A X% of regio defects means that X% of the monomers are incorporated with the inverse head-tail order than in a perfect α2 case.<br>Thus, number of atoms and chains remain unvaried.</p> <ul> <li><a href="https://zenodo.org/records/14048060/files/d2p.zip?download=1"><strong>d2p.zip:</strong></a> α2 containing 2% of regio defects.</li> <li><strong><a href="https://zenodo.org/records/14048060/files/d4p.zip?download=1">d4p.zip:</a> </strong>α2 containing 4% of regio defects.</li> </ul> <p>Vacancy, 31 chains, 3348 atoms:</p> <ul> <li><strong><a href="https://zenodo.org/records/14048060/files/v1.zip?download=1">v1.zip:</a> </strong>contains the same α2 but with a vacancy, i.e. a complete chain is missing.</li> </ul> <p>β structures were obtained by repeating the crystalline unit cell 3 times in a, 2 times in b, and 4 times in c (comprising 36 chains and 3888 atoms)</p> <ul> <li><strong><a href="https://zenodo.org/records/14048060/files/beta2.zip?download=1">beta2.zip:</a> </strong>β2 structure is a monochiral domain, with purely right-handed chains.</li> <li><a href="https://zenodo.org/records/14048060/files/beta1.zip?download=1"><strong>beta1.zip:</strong></a> β1 structure comprises twelve left- and twenty-four right-handed chains.</li> </ul> <p> </p> <p>File names ended with <strong>_img</strong> indicates that supplementary images are provided for that structure.</p> <p>In most of the cases, the LAMMPS data files are accompanied by a PDB file for completeness.</p> <p>To download them all including extra files at once, then download the archive file <a href="https://zenodo.org/api/records/14048060/files-archive"><strong>14048060.zip</strong>.</a></p>
Fig. 1. Structure analysis, determined using 15 in Association analysis and molecular tagging of phytochemicals in the endangered medicinal plant licorice (Glycyrrhiza glabra L.)
Fig. 1. Structure analysis, determined using 15 AFLP primer combinations and the STRUCTURE software, of the 170 individual Glycyrrhiza glabra plants sampled in 59 localizations. Sub-populations A and B are represented in green and red color, respectively. Individuals (identified by numbers) are grouped in localizations (identified by L1, L2, etc., and also by the corresponding codes). See Supplementary Table 4 for information on the different localizations. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Data from: A molecular analysis of African lion (Panthera leo) mating structure and extra-group paternity in Etosha National Park
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Comparative structural insights and functional analysis for the distinct unbound states of Human AGO proteins - Molecular dynamics trajectories and analysis scripts
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Molecular and spatial analysis unveils the functional basis of tertiary lymphoid structures in Sjogren’s syndrome[bulk RNA-seq]
GEO Series GSE272410. Homo sapiens. 73 samples. Type: Expression profiling by high throughput sequencing.
Molecular and spatial analysis unveils the functional basis of tertiary lymphoid structures in Sjogren’s syndrome[scRNA-seq]
GEO Series GSE272409. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
Molecular analysis of a case of renal cell carcinoma with t(6;11) (p21;q12) reveals a link to a lysosome-like structure
GEO Series GSE49901. Homo sapiens. 2 samples. Type: Expression profiling by array.
Genomic, transcriptomic, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages
GEO Series GSE130190. Pseudomonas aeruginosa PAO1; Pseudomonas virus PA5oct. 13 samples. Type: Expression profiling by high throughput sequencing.
Structural, functional and molecular analysis of the effects of aging in the small intestine and colon of C57BL/6J mice [Small Intestine data]
GEO Series GSE39974. Mus musculus. 12 samples. Type: Expression profiling by array.
Structural, functional and molecular analysis of the effects of aging in the small intestine and colon of C57BL/6J mice
GEO Series GSE39975. Mus musculus. 16 samples. Type: Expression profiling by array.
Structural, functional and molecular analysis of the effects of aging in the small intestine and colon of C57BL/6J mice [Colon data]
GEO Series GSE39973. Mus musculus. 4 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.