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8 results for “Nanodisc”
A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs
<p><strong>EM Quantitation:</strong></p> <p>Raw data gathered from EM images taken to determine nanodisc population size distribution.</p> <p> </p> <p><strong>NNB TGN46 analysis:</strong></p> <p>Data analysis of the Native Nanobleach experiments of TGN46 in native nanodiscs to determine population distribution of oligomeric organizations.</p> <p> </p> <p><strong>Polymer conditions:</strong></p> <p>Physiochemical characteristic and extraction conditions for all polymers in the library both commercially available and in-house.</p> <p> </p> <p><strong>Protein groups polymer screen original file:</strong></p> <p>Original output of MaxQuant data processing of polymer screen data.</p> <p> </p> <p><strong>Organelle matching:</strong></p> <p>Code used for mathcing proteins identified in the proteomics output to organelle or residence for all organellar annotations.</p> <p> </p> <p><strong>Polymer code:</strong></p> <p>Code used to process and normalize the MaxQuant output and calulate extraction efficiency across all detected proteins.</p> <p> </p> <p><strong>MAP Library Details:</strong></p> <p>Graphic and table explaining chemical details of all polymer used in the screen, both commerically available and in-house synthesized.</p> <p> </p> <p><strong>NNB TGN46:</strong></p> <p>Raw scope files for the TIRF microscopy single molecule step photobleaching experiment with TGN46.</p> <p> </p> <p><strong>Organellar Breakdown Database:</strong></p> <p>Proteins detected in the polymer screen through proteomics experiments stratified into organelle of residence.</p> <p> </p> <p><strong>Human Proteome FASTA:</strong></p> <p>The FASTA file used for proteome searching in processing the proteomics data to build the screening database.</p> <p> </p> <p><strong>Hand Curated Organellar Proteomes:</strong></p> <p>Organellar proteomes used for organellar sorting and identification of proteins detected in the screen.</p> <p> </p> <p><strong>Polymer SEC Superdex75:</strong></p> <p>Size exculsion chromatography traces for chloroSMA series of polymers. Was used to characterize length and population polydispersity.</p> <p> </p> <p><strong>Negative Stain Raw:</strong></p> <p>RAW TEM scope images of purified synaptophysin-vamp2 containing nanodiscs. Populatoin size distribution was determined.</p> <p> </p> <p><strong>FSEC Polymer CS80:</strong></p> <p>Fluoresence size exclusion chromatogram for purified synaptophysin-vamp2 containing nanodiscs to ensure population homogeneity and purity.</p> <p><strong>NMR Raw data:</strong></p> <p>NMR raw files for characterizing the in-house synthesized Chloro-SMA series and AASTY series.</p> <p> </p>
Twisted epitaxy of gold nanodiscs grown between twisted substrate layers of molybdenum disulfide
<p>We expand the concept of epitaxy to a regime of "twisted epitaxy" with the epilayer crystal orientation between two substrates influenced by their relative orientation. We annealed nanometer-thick gold (Au) nanoparticles between two substrates of exfoliated hexagonal molybdenum disulfide (MoS<sub>2</sub>) with varying orientation of their basal planes with a mutual twist angle from 0° to 60°. Transmission electron microscopy studies show that the Au alignment is midway between that of the top and bottom MoS<sub>2</sub> when the twist angle of the bilayer is small (< ~7°). For larger twist angles, Au has only a small misorientation with the bottom MoS<sub>2</sub> that varies approximately sinusoidally with the twist angle of the bilayer MoS<sub>2</sub>. Four-dimensional scanning transmission electron microscopy analysis further reveals a periodic strain variation (< |±0.5%|) in the Au nanodiscs associated with the twisted epitaxy, consistent with the Moiré registry of the two MoS<sub>2</sub> twisted layers.</p>
Scanning electron images of nanodiscs
<p>Images obtained by scanning electron microscopy of magnetic nanodiscs dried on a silicon substrate and nanodiscs interacting with skin cancer cells</p>
Twisted epitaxy of gold nanodiscs grown between twisted substrate layers of molybdenum disulfide
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Data from: Examining the thermotropic properties of large, circularized nanodiscs
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Molecular dynamics simulation data of ELIC in nanodiscs
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Systematic evaluation of lecithin:cholesterol acyltransferase binding sites in apolipoproteins via peptide based nanodiscs: regulatory role of charged residues at positions 4 and 7
<p>Molecular dynamics simulation systems of publication "Systematic evaluation of lecithin:cholesterol acyltransferase binding sites in apolipoproteins via peptide based nanodiscs: regulatory role of charged residues at positions 4 and 7" by Akseli Niemelä and Artturi Koivuniemi.</p>
Effect of deposition angle on fabrication of plasmonic gold nanocones and nanodiscs_experimetal dataset
<p>This file contains the raw unprocessed experimental data for the results published in Liška et al., Effect of deposition angle on fabrication of plasmonic gold nanocones and nanodiscs, Microelectronic Engineering, Volume 228, 1 May 2020, 111326. </p> <p>. </p>
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.