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15
datasets available to search
ShareScore release 0.9.0
Dataset results
15 results for “Nanopore long-read sequencing”
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy
<p>The data presented in "NanoGalaxy: A Galaxy tool kit with workflows for third-generation sequence analysis" to illustrate the functionality of the tools was obtained from: Wick, Ryan R., et al. "Completing bacterial genome assemblies with multiplex MinION sequencing." <em>Microbial genomics</em> 3.10 (2017).</p> <p>+</p> <p>Li, Ruichao, et al. "Efficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing data." <em>Gigascience</em> 7.3 (2018): gix132.</p>
Nanopore long-reads sequencing of hepatitis A virus RNAs
GEO Series GSE293395. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Nanopore long-read RNA sequencing in untreated (UN), sodium arsenite (SA) and heat shock (HS) stressed HeLa cells
GEO Series GSE277764. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing; Other.
Nanopore long-read sequencing from Nutlin-3a-treated MCF-7 cells
GEO Series GSE226080. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Generation of full-length circRNA libraries for Oxford Nanopore long-read sequencing
GEO Series GSE197872. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Long-read Nanopore sequencing of synthetic "sequin" controls
GEO Series GSE151984. synthetic construct. 4 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis of TSC1 and TSC2 using Nanopore long-read sequencer
GEO Series GSE241410. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Nanopore long-read RNA sequencing shows region-specific sex differences in wild-type mouse brain mRNA isoform expression and usage
GEO Series GSE246705. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing.
Discovery of Varicella zoster virus circular RNA with nanopore long-read sequencing
GEO Series GSE252124. Homo sapiens. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Long-read Nanopore sequencing of mouse neural stem cells
GEO Series GSE151841. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing.
Long-read transcriptome profiling of the rat hippocampal neurons in primary culture at different time points after activation using Nanopore sequencing
GEO Series GSE218694. Rattus norvegicus. 20 samples. Type: Expression profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing
GEO Series GSE194024. Mus musculus; Homo sapiens. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Long-read nanopore sequencing (Nanopore-seq) of PQBP1 knockdown in ovarian cancer cells
GEO Series GSE223088. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing [DataSet1: scNanoATAC-seq]
GEO Series GSE194022. Mus musculus; Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing [DATASet2: bulkATAC-seq]
GEO Series GSE194023. Mus musculus; Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.