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63 results for “Neighbor joining”
Figures 1–3. Neighbor-joining trees. 1 in Revision of New World Cosmorrhyncha Meyrick, 1913 (Lepidoptera: Tortricidae: Olethreutinae), with descriptions of five new species
Figures 1–3. Neighbor-joining trees. 1) Tree based on all available sequences of Cosmorrhyncha (n = 28), regardless of sequence length. 2) Tree based on sequences excluding the the 200bp segment that could not be amplified for several specimens of Cosmorrhyncha (n = 24). 3) Tree based on all sequences longer than 500bp (n = 23). [Bootstrap values ≥70 shown at nodes; BOLD process IDs or GenBank accession numbers next to species names.]
Neighbor-joining phylogenetic tree based on 16S rRNA sequences.
<p><strong>Supplementary Figure (S1):</strong> Bayesian 50% majority rule phylogram of 16S ribosomal RNA region showing the phylogenetic relationships among the bacterial isolates in our study. The newly generated sequences are preceded by red circle. The GenBank sequences are preceded by blue squares. The GenBank accession number appears after the species name. Numbers above the branches represent Bayesian posterior probabilities (≥ 0.90), and the maximum parsimony bootstrap support values are given below the branches (≥70%). The out group used for tree construction preceded by empty circle.</p>
Fig. 1. The Neighbor Joining tree for 37 in Taxonomic Diversity Of The Genus Tor (Cyprinidae) From Aceh Waters In Indonesia Based On Cytochrome Oxidase Sub-Unit I (Coi) Gene
Fig. 1. The Neighbor Joining tree for 37 sequences of Tor from seven locations in Aceh Province estimated using 1000 bootstrap replications.
Figure 5. A phylogenetic tree was generated using the neighbor-joining method which shows the genetic relationship between C. sphaerospermum 2 in Morphological and molecular identification of Cladosporium sphaerospermum isolates collected from tomato plant residues
Figure 5. A phylogenetic tree was generated using the neighbor-joining method which shows the genetic relationship between C. sphaerospermum 2 (as indicated in red circle) and the other C. sphaerospermum isolates deposited in GenBank (NCBI)
Fig. 2. Neighbor-joining phylogenetic tree for a 219 in Prevalence of filarioid nematodes and trypanosomes in American robins and house sparrows, Chicago USA
Fig. 2. Neighbor-joining phylogenetic tree for a 219 bp region of the trypanosome 18s rRNA gene. Underlined sequences are from this study. Sequences for additional Trypanosoma spp. were downloaded from NCBI Genbank for comparison and Bodo caudatus was used as an outgroup. Numbers by branches indicate statistical bootstrap support of À50%.
Fig. 1. Neighbor-joining phylogenetic trees for a 475 in Prevalence of filarioid nematodes and trypanosomes in American robins and house sparrows, Chicago USA
Fig. 1. Neighbor-joining phylogenetic trees for a 475 bp region of the 18S rRNA gene for filarioid nematodes (A) and a 529 bp region of the filarial nematode mitochondrial cytochrome c oxidase subunit I gene (B). Sequences were obtained from bird blood clots, bird tissues, or adult nematodes recovered from birds. Underlined sequences are from this study. Additional sequences for filarial nematode species were downloaded from NCBI Genbank for comparison and Thelazia lacrimalis and Caenorhabditis elegans were used as outgroups. Numbers by branches indicate statistical bootstrap support of À50%.
Fig. 2. Simplified neighbor-joining tree reconstructed from partial cox1 in Lurking in the dark: Cryptic Strongyloides in a Bornean slow loris
Fig. 2. Simplified neighbor-joining tree reconstructed from partial cox1 gene (716 bp) sequences of Strongyloides spp. S. fuelleborni sequences for Bornean primates cluster within the S. fuelleborni group, together with previously described sequences for the parasite found in African and Japanese primates. The S. stercoralis cluster includes sequences from humans from Laos, Africa and Japan, captive chimpanzees, and dogs. The Strongyloides sp. cluster corresponds to sequences from the slow loris. An alternative hypothesis is presented next to the tree, where instead of representing a different species, Strongyloides sp. would be part of a cryptic assemblage within the S. stercoralis group.
Fig. 3. Neighborjoining phylogenetic tree constructed from a in Report on 14 unrecorded bacterial species in Korea that belong to the phyla Bacteroidetes and Deinococcus-Thermus
Fig. 3. Neighborjoining phylogenetic tree constructed from a comparative analysis of 16S rRNA gene sequences showing the relationships between the strains isolated in this study and their relatives of the class Bacteroidetes. Numbers at nodes are levels of bootstrap support for branch points, based on 1,000 resampling; values are shown only if greater than 70%. Filled circles at nodes indicate that the corresponding nodes were also recovered using maximumlikelihood algorithm. Bar, 5% sequence divergence.
Fig. 2. Neighborjoining phylogenetic tree constructed from a in Report on 14 unrecorded bacterial species in Korea that belong to the phyla Bacteroidetes and Deinococcus-Thermus
Fig. 2. Neighborjoining phylogenetic tree constructed from a comparative analysis of 16S rRNA gene sequences showing the relationships between the strains isolated in this study and their relatives of the class DeinococcusThermus. Numbers at nodes are levels of bootstrap support for branch points, based on 1,000 resampling; values are shown only if greater than 70%. Filled circles at nodes indicate that the corresponding nodes were also recovered using maximumlikelihood algorithm. Bar, 2% sequence divergence.
Fig. 4. Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of four unrecorded wild yeasts from the soils of Republic of Korea in winter
Fig. 4. Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain NH33 with closely related species. Bootstrap values (>50%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 3. Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of four unrecorded wild yeasts from the soils of Republic of Korea in winter
Fig. 3. Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain NH19 with closely related species. Bootstrap values (>50%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 2. Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of four unrecorded wild yeasts from the soils of Republic of Korea in winter
Fig. 2. Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strains NH20 and YP416 with closely related species. Bootstrap values (>50%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 3. A neighbor-joining phylogenetic tree constructed from a in Isolation and characterization of two unrecorded yeast species in the phylum Basidiomycota
Fig. 3. A neighbor-joining phylogenetic tree constructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain DJ1-5-B-10C with closely related species. Bootstrap values (>70%) are shown at the branch nodes. Bar, 0.02 substitutions per nucleotide position.
Fig. 2. A neighbor-joining phylogenetic tree constructed from a in Isolation and characterization of two unrecorded yeast species in the phylum Basidiomycota
Fig. 2. A neighbor-joining phylogenetic tree constructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain B2UV-201 with closely related species. Bootstrap values (>70%) are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 3. A Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of two unrecorded yeast species in the order Filobasidiales
Fig. 3. A Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the rela- tionships of strain PG1-1-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 2. A Neighbor-joining phylogenetic tree reconstructed from a in Isolation and characterization of two unrecorded yeast species in the order Filobasidiales
Fig. 2. A Neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relation- ships of strains GW1-3 with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 3. A neighbor-joining phylogenetic tree reconstructed from a in Description of unrecorded wild yeasts from soil in Republic of Korea under cold conditions
Fig. 3. A neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain PG3-4-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position.
Fig. 2. A neighbor-joining phylogenetic tree reconstructed from a in Description of unrecorded wild yeasts from soil in Republic of Korea under cold conditions
Fig. 2. A neighbor-joining phylogenetic tree reconstructed from a comparative analysis of 26S rRNA gene sequences showing the relationships of strain CY-9-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.02 substitutions per nucleotide position.
Fig. 58. Neighbor joining tree using Kimura-2 in External morphology of immature stages of Zaretis strigosus (Gmelin) and Siderone galanthis catarina Dottax and Pierre comb. nov., with taxonomic notes on Siderone (Lepidoptera: Nymphalidae: Charaxinae)
Fig. 58. Neighbor joining tree using Kimura-2-Parameter distance model of 37 sequences of species of Siderone Hübner [1823] and Coenophlebia C. Felder and R. Felder, 1862, with 658 base pairs of the mitochondrial gene cytochrome oxidase, Subunit I. Scale bar = 1% of distance.
Figure 3. Neighbor-joining consensus tree for 23 in Morphology and phylogeny of the sea anemone Stichodactyla haddoni (Cnidaria: Anthozoa: Actiniaria) from Chabahar Bay, Iran
Figure 3. Neighbor-joining consensus tree for 23 species, including Iranian sea anemone species (CHIAS1 and CHIAS2), based on 18S rDNA sequences. Cl1: Stichodactylidae; Cl2: Actiniidae; Cl3: Hormathiidae; Cl4: Aiptasiidae; Cl5: Actinostolidae. The numbers beside the branches are bootstrap values with 1000 replications. Bootstrap supports under 50% are not shown in this analysis.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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