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42 results for “Neural plasticity”
Data of "Bayesian inference of high-dimensional finite-strain visco-elastic-visco-plastic model parameters for additive manufactured polymers and neural network based material parameters generator"
<p><strong>General</strong></p> <p>Data of <a href="http://doi.org/10.1016/j.ijsolstr.2023.112470">https://doi.org/10.1016/j.ijsolstr.2023.112470</a> related to MOAMMM project.</p> <p>Data related to the publication (we would be grateful if you could cite the paper in the case in which you are using the data):</p> <p>title = "Bayesian inference of high-dimensional finite-strain visco-elastic-visco-plastic model parameters for additive manufactured polymers and neural network based material parameters generator.",<br> journal = "International Journal of Solids and Structures",<br> year = "2023",<br> volume = "283",<br> pages = "112470",<br> doi = "10.1016/j.ijsolstr.2023.112470",<br> author = "Ling Wu, Cyrielle Anglade, Lucia Cobian, Miguel Monclus, Javier Segurado, Fatma Karayagiz, Ubiratan Freitas, and Ludovic Noels"</p> <p>This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 862015. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union. Neither the European Union nor the granting authority can be held responsible for them.</p> <p><strong>Description</strong></p> <p>BI code and results of the inference of a pressure-dependent visco-elastic visco-plastic model developed in [NGU16] with a umat implementation in <a href="https://gitlab.uliege.be/moammm/moammmPublic/code/-/tree/main/MaterialModels/FiniteStrain/Finite_VEVP">https://gitlab.uliege.be/moammm/moammmPublic/code/-/tree/main/MaterialModels/FiniteStrain/Finite_VEVP</a>. The BI is described in [WU23] .The experimental results used in the BI are reported in [COB22,COB22b]. To run the BI you need the open source code <a href="https://gitlab.onelab.info/cm3/cm3Libraries">https://gitlab.onelab.info/cm3/cm3Libraries</a> If you use these data or model, we would be grateful if you could cite the related papers.</p> <p><strong>Bibliography</strong></p> <ul> <li>[WU23] L. Wu, C. Anglade, L. Cobian, M. Monclus, J. Segurado, F. Karayagiz, U. Santos Freitas, L. Noels, Bayesian inference of high-dimensional finite-strain visco-elastic-visco-plastic model parameters for additive manufactured polymers and neural network based material parameters generator, International Journal of Solids and Structures (2023) 112470: https://doi.org/10.1016/j.ijsolstr.2023.112470</li> <li>[COB22] L. Cobian, M. Rueda-Ruiz, J.P. Fernandez-Blazquez, V. Martinez, F. Galvez, F. Karayagiz, T. Lück, J. Segurado, M.A. Monclus, Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behaviour, Polymer Testing 110 (2022) 107556: https://doi.org/10.1016/j.polymertesting.2022.107556 (in Open access)</li> <li>[COB22b] Data of “. Cobian, M. Rueda-Ruiz, J.P. Fernandez-Blazquez, V. Martinez, F. Galvez, F. Karayagiz, T. Lück, J. Segurado, M.A. Monclus, Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behaviour, Polymer Testing 110 (2022) 107556” http://dx.doi.org/10.5281/zenodo.6136935 (in Open access)</li> <li>[NGU16] V. D. Nguyen, F. Lani, T. Pardoen, X. Morelle, L. Noels, A large strain hyperelastic viscoelastic-viscoplastic-damage constitutive model based on a multi-mechanism non-local damage continuum for amorphous glassy polymers. International Journal of Solids and Structures 96 (2016): 192-216; https://dx.doi.org/10.1016/j.ijsolstr.2016.06.008, Open access: https://orbi.uliege.be/handle/2268/197898</li> </ul> <p><strong>Directories</strong></p> <p>All the codes and experimental results are in five directories:</p> <ol> <li>experimentalTests: experimental data, see the README.txt in each subdirectory for details</li> <li>BayesianVE: BI of the visco-elastic parameters <ol> <li>PlotExperimentalCurves: to vizualize the experimental curves and prepare the observations for the BI in the VE range <ol> <li>Loadcase_H.py and Loadcase_V.py read experimental results and create Load_ExpVE_H.dat and Load_ExpVE_V.dat, which keep the experimental observations and loading conditions to perform the BI.</li> <li>PrintDir_H & PrintDir_V subdirectories with the functions called by Loadcase_H.py and Loadcase_V.py</li> <li>Load_ExpVE_H.dat and Load_ExpVE_V.dat created files with the observations and loading conditions to perform the BI</li> </ol> </li> <li>VE_V2Step and VE_H: BI for viscoelastic properties of "V" specimen (VE_V2Step) and "H" specimen (VE_H) <ol> <li>BI_allpos_sequence.py runs the BI using Predict_VETest.py and creates the MCMC_VE_....dat</li> <li>WarmStart = True is used to restart an inference</li> <li>MCMC_VE_....dat in the VE_V2Step and VE_H directories are the BI results</li> <li>When proceeding in two steps in VE_V2Step, a first step generates MCMC_VE_VN8_1st.dat whose posterior is used as prior in the second step to generate MCMC_VE_VN8_2nd.dat</li> </ol> </li> <li>CheckBayRes: to visualize predictions of a BI sample and experimental curves <ol> <li>MCMCRes.py is used to check the numerical predictions of a BI parameter sample (read last sample by default, V or H direction can be selected at line</li> <li>ResKGEmu.py plots the evolution of elastic properties with time</li> <li>uses as input VE_V2Step/MCMC_VE_....dat or VE_H/MCMC_VE_....dat</li> <li>uses local ViscoElasticTest.py, line.geo, line. msh as interface with https://gitlab.onelab.info/cm3/cm3Libraries code</li> <li>uses local functions plotExpLoad_Unload.py, plotExp.py</li> </ol> </li> <li>ViscoElasticTest.py, line.geo, line.msh: interface with <a href="https://gitlab.onelab.info/cm3/cm3Libraries">https://gitlab.onelab.info/cm3/cm3Libraries</a> code used by VE_V2Step and VE_H to call the VEVP model</li> </ol> </li> <li>BayesianVEVP: BI of the visco-elastic and visco-plastic parameters <ol> <li>PlotExperimentalCurves: to vizualize the experimental curves and prepare the observations for the BI in the VE-VP ranges <ol> <li>Loadcase_H.py and Loadcase_V.py read experimental results and create Load_ExpVEVP_H.dat and Load_ExpVEVP_V.dat, which keep the experimental observations and loading conditions to perform BI at the viscoplastic stage.</li> <li>PrintDir_H & PrintDir_V subdirectories with the functions called by Loadcase_H.py and Loadcase_V.py</li> <li>Load_ExpVEVP_H.dat and Load_ExpVEVP_V.dat created files with the observations and loading conditions to perform the BI</li> </ol> </li> <li>VP_V2step and VP_H2step: BI for viscoelastic-viscoplastic properties of "V" specimen (VP_V2Step) and "H" specimen (VP_H2Step) <ol> <li>BI_allpos_sequence.py runs the BI using Predict_VETest.py and creates the MCMC_VP_....dat</li> <li>WarmStart = True is used to restart an inference</li> <li>It starts from the VE prosterior as prior, see point 2, and generates a MCMC_VP_?_1of2Steps.dat (? being H or V)</li> <li>Then using MCMC_VP_?_1of2Steps.dat posterior to get a new prior, it generates MCMC_VP_?_2of2Steps.dat (? being H or V)</li> </ol> </li> <li>CheckBayRes: visualize predictions of a BI sample and experimental curves <ol> <li>MCMCRes.py is used to check the numerical predictions with 3 BI parameter samples ([28000, 45000,70000] by default, V or H direction can be selected at line 12) using the samples of BayesianVEVP/VP_?2step/MCMC_VP_?_2of2Steps.dat (? being H or V)</li> <li>plot_hist.py is used to plot histograms of all the inferred parameters using the samples of BayesianVEVP/VP_?2step/MCMC_VP_?_2of2Steps.dat (? being H or V)</li> <li>Plot_Prop.py plots joints histograms of the inferred parameters using the samples of BayesianVEVP/VP_?2step/MCMC_VP_?_2of2Steps.dat (? being H or V)</li> <li>ResKGEmu.py plots the evolution of elastic properties with time</li> </ol> </li> <li>VEVPTest.py: interface with https://gitlab.onelab.info/cm3/cm3Libraries code used by VP_V2Step and VP_H2Step to call the VEVP model</li> </ol> </li> <li>RandomParametersGenerator: used to generate the parameters from the BI samples, with the same statistical content <ol> <li>Generator <ol> <li>DataProcess.py: creates normalized data for training from final inferred parameters in ../MCMC_ResData and creates ?_dirNormData (? being H or V)</li> <li>KmeanDataProcess.py: performs clustering for the data of H_dirNormDat and creates H_dirNormData_2cluster (no need for V direction because not bimodal)</li> <li>Gan_V.py and Gan_H.py are used to train the random material parameter generators and create the VDir_Gan or HDir_Gan200_0/HDir_Gan200_1</li> <li>GenerateParameters.py generates random parameters using the Gan files VDir_Gan or HDir_Gan200_0/HDir_Gan200_1 and checks the joint histograms of generated parameters, generated parameters are in V_GenData and H_GenData</li> <li>Ganlib.py is used by the generator</li> </ol> </li> <li>CheckRes <ol> <li>GenDataRes.py is used to check the numerical predictions with the generated parameter samples, see point 4) (using V_GenData and H_GenData).</li> <li>Plot_PropGen.py plots joints histograms of the generated parameters using the samples of V_GenData or H_GenData</li> </ol> </li> </ol> </li> <li>MCMC_ResData:All final data used in the paper (they can substitute the ones used here above) <ol> <li>H_direction and V_direction keep the MCMC random walk results of BI.</li> <li>RandomParameterGenerator keeps results of the generator Paper</li> </ol> </li> </ol> <p><strong>Figures of [WU23]</strong></p> <ul> <li>Fig. 5: From directory BayesianVE/PlotExperimentalCurves, run python3 ./PrintDir_V/plotExp_T.py or ./PrintDir_V/plotExp_C.py or ./PrintDir_V/plotExp_R.py</li> <li>Fig. 7: BayesianVEVP/CheckBayRes/Plot_Prop.py with direct = "V" and then with direct = "H" and with Var = [0,1,20,24,28,29,30,31]</li> <li>Fig. 8: BayesianVEVP/CheckBayRes/MCMCRes.py with direct = "V" (requires <a href="https://gitlab.onelab.info/cm3/cm3Libraries">https://gitlab.onelab.info/cm3/cm3Libraries</a> code)</li> <li>Fig. 9: BayesianVEVP/CheckBayRes/MCMCRes.py with direct = "H" (requires<a href="https://gitlab.onelab.info/cm3/cm3Libraries"> https://gitlab.onelab.info/cm3/cm3Libraries</a> code)</li> <li>Fig. 11: RandomParametersGenerator/CheckRes/Plot_PropGen.py with direct = "V" and then with direct = "H" and with Var = [0,1,20,24,28,29,30,31]</li> <li>Fig. 12: RandomParametersGenerator/CheckRes/GenDataRes.py with direct = "V" (requires <a href="https://gitlab.onelab.info/cm3/cm3Libraries">https://gitlab.onelab.info/cm3/cm3Libraries</a> code)</li> <li>Fig. 13: RandomParametersGenerator/CheckRes/GenDataRes.py with direct = "H" (requires <a href="https://gitlab.onelab.info/cm3/cm3Libraries">https://gitlab.onelab.info/cm3/cm3Libraries</a> code)</li> <li>Fig. 14A: From directory BayesianVE/PlotExperimentalCurves, run python3 ./PrintDir_H/plotExp_T.py or ./PrintDir_H/plotExp_C.py or ./PrintDir_H/plotExp_R.py</li> <li>Fig. 15C: BayesianVEVP/CheckBayRes/Plot_Prop.py with direct = "V", Var = [2,3,8,9,14,15,18,19] and [20,21,22,23,24,25,26,27]</li> <li>Fig. 16C: BayesainVEVP/CheckBayRes/plot_hist.py with direct = "V"</li> <li>Fig. 17C: BayesianVEVP/CheckBayRes/plot_hist.py with direct = "V"</li> <li>Fig. 18C: BayesianVEVP/CheckBayRes/Plot_Prop.py with direct = "H", Var = [2,3,8,9,14,15,18,19] and [20,21,22,23,24,25,26,27]</li> <li>Fig. 19C: BayesianVEVP/CheckBayRes/plot_hist.py with direct = "H"</li> <li>Fig. 20C: BayesianVEVP/CheckBayRes/plot_hist.py with direct = "H"</li> <li>Fig. 21D: RandomParametersGenerator/CheckRes/Plot_PropGen.py with direct = "V" , Var = [2,3,8,9,14,15,18,19] and [20,21,22,23,24,25,26,27]</li> <li>Fig. 22D: RandomParametersGenerator/CheckRes/Plot_PropGen.py with direct = "H" , Var = [2,3,8,9,14,15,18,19] and [20,21,22,23,24,25,26,27]</li> </ul> <p> </p> <p> </p>
Dataset for: Plasticity and genetic effects contribute to different axes of neural divergence in a community of mimetic Heliconius butterflies
<p>Changes in ecological preference, often driven by spatial and temporal variation in resource distribution, can expose populations to environments with divergent information content. This can lead to adaptive changes in the degree to which individuals invest in sensory systems and downstream processes, to optimize behavioural performance in different contexts. At the same time, environmental conditions can produce plastic responses in nervous system development and maturation, providing an alternative route to integrating neural and ecological variation. Here, we explore how these two processes play out across a community of <em>Heliconius</em> butterflies. <em>Heliconius</em> communities exhibit multiple Mullerian mimicry rings, associated with habitat partitioning across environmental gradients. These environmental differences have previously been linked to heritable divergence in brain morphology in parapatric species pairs. They also exhibit a unique dietary adaptation, known as pollen feeding, that relies heavily on learning foraging routes, or trap-lines, between resources, which implies an important environmental influence on behavioural development. By comparing brain morphology across 133 wild-caught and insectary reared individuals from seven <em>Heliconius</em> species, we find strong evidence for interspecific variation in patterns of neural investment. These largely fall into two distinct patterns of variation; first, we find consistent patterns of divergence in the size of visual brain components across both wild and insectary reared individuals, suggesting genetically encoded divergence in the visual pathway. Second, we find interspecific differences in mushroom body size, a central component of learning and memory systems, but only among wild caught individuals. The lack of this effect in common-garden individuals suggests an extensive role for developmental plasticity in interspecific variation in the wild. Finally, we illustrate the impact of relatively small-scale spatial effects on mushroom body plasticity by performing experiments altering the cage size and structure experienced by individual <em>H. hecale</em>. Our data provide a comprehensive survey of community level variation in brain structure, and demonstrate that genetic effects and developmental plasticity contribute to different axes of interspecific neural variation.</p>
Noninvasive Brain Stimulation to Evaluate Neural Plasticity After Stroke
ClinicalTrials.gov study NCT02465034. IPD Sharing: NO. Countries: 1. Publications: 1.
Dataset for: Plasticity and genetic effects contribute to different axes of neural divergence in a community of mimetic Heliconius butterflies
Open the record for dataset details and reuse information.
Data of A recurrent neural network-accelerated multi-scale model for elasto-plastic heterogeneous materials subjected to random cyclic and non-proportional loading paths
<pre>Data related to the publication (we would be grateful if you could cite the paper in the case in which you are using the data) title = "A recurrent neural network-accelerated multi-scale model for elasto-plastic heterogeneous materials subjected to random cyclic and non-proportional loading paths", journal = "Computer Methods in Applied Mechanics and Engineering", pages = " 113234", year = "2020", issn = "0045-7825", doi = "https://doi.org/10.1016/j.cma.2020.113234", author = "Wu, Ling and Nguyen, Van Dung and Kilingar, Nanda Gopala and Noels, Ludovic"</pre>
Enhancement of Learning Associated Neural Plasticity by Selective Serotonin Reuptake Inhibitors
ClinicalTrials.gov study NCT02753738. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Immune Activation, Neural Plasticity and Depression
ClinicalTrials.gov study NCT06306248. IPD Sharing: NO. Countries: 1. Publications: 15.
Neural Plasticity and Motor Recovery After Upper Extremity Motor Training in People With c-SCI
ClinicalTrials.gov study NCT06065384. IPD Sharing: YES. Countries: 2. Publications: 0.
Post-stroke Neural Plasticity With Atomoxetine
ClinicalTrials.gov study NCT02788357. IPD Sharing: NO. Countries: 0. Publications: 1.
Neurofeedback and Neural Plasticity of Self-Processing and Affect Regulation Circuits in Suicide Attempting Adolescents
ClinicalTrials.gov study NCT06183580. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Effect of Prolonged Electrical Stimulation on Neural Plasticity in Spinal Cord Injury
ClinicalTrials.gov study NCT00387673. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Robotic Pedaling Therapy for Targeted Neural Plasticity
ClinicalTrials.gov study NCT03300258. IPD Sharing: NO. Countries: 1. Publications: 0.
Effects of tDCS and Cognitive Rehabilitation on Cognition and Neural Plasticity in MS Patients
ClinicalTrials.gov study NCT07160218. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Plexin D1 emerges as a novel target in the development of neural lineage plasticity in treatment-resistant prostate cancer
GEO Series GSE267961. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
TGF-β signaling controls neural crest developmental plasticity via SMAD2/3 [TGF-β KD RNA-seq]
GEO Series GSE278071. Gallus gallus. 6 samples. Type: Expression profiling by high throughput sequencing.
Repetitive transcranial magnetic stimulation induces cortical layer, brain region, and protocol dependent neural plasticity [Spatial transcriptomics]
GEO Series GSE259405. Mus musculus. 12 samples. Type: Other.
A novel hydrogel-based instructive biohybrid 3D culture system for modeling human neural stem cell plasticity, neurogenesis, neurodevelopment, and neurodegeneration
GEO Series GSE78117. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Urothelial-to-Neural Lineage Plasticity Drives Progression to Small Cell Bladder Cancer [RNA]
GEO Series GSE145260. Homo sapiens. 22 samples. Type: Expression profiling by array.
TGF-β signaling controls neural crest developmental plasticity via SMAD2/3 [hiNCC RNA-seq]
GEO Series GSE175809. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity
GEO Series GSE61991. Mus musculus; Rattus norvegicus. 35 samples. Type: Expression profiling by high throughput sequencing.
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