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14
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ShareScore release 0.7.1
Dataset results
14 results for “Non-target analysis”
mzrtsim: Raw Data Simulation for Reproducible Gas/Liquid Chromatography–Mass Spectrometry Based Non-targeted Metabolomics Data Analysis
<p>All the data for 'mzrtsim: Raw Data Simulation for Reproducible Gas/Liquid Chromatography–Mass Spectrometry Based Non-targeted Metabolomics Data Analysis'</p> <p>sim.zip is stimulated data for intensity cutoff 0.05. simxcms.csv is peak intensity profiles for their simulated peaks.</p> <p>sim3.zip are simulated data for normal/leading/tailing peaks with tailing factor of 1, 0.8, and 1.5, respectively.</p> <p>All the csv files begin with sim3 are extracted peaks list from the sim3.zip with corresponding data analysis software.</p> <p>csv.zip recorded the m/z, retention time, intensity, and compounds name for simulated compound for each condition (sim.zip and sim3.zip).</p> <p>sep1.mzML: simulation for 8 isomers with similar m/z while different retention times. 7 peaks are non baseline separation peaks. Peaks profile is saved in spe1.csv file.</p> <p>xcms.csv, mzmine.csv, openms.csv: peaks found in sep1.mzML by xcms, mzmine 4.5 and openms, respectively.</p> <p>R code: <a href="https://github.com/yufree/democode/blob/master/meta/simfin.R">https://github.com/yufree/democode/blob/master/meta/simfin.R</a></p> <p>Website of mzrtsim package: https://yufree.github.io/mzrtsim/</p>
Data files for:Critical assessment of the chemical space covered by LC-HRMS non-targeted analysis
<p>This upload contains the data for the review: "Critical assessment of the chemical space covered by LC-HRMS non-targeted analysis".</p> <p>All the files needed to run the code uploaded to GitHub (https://github.com/tobihul/CEC_review_code) can be found here.</p> <p>Included is: </p> <ul> <li>All 2657 structures found in the studied papers with their CID, InChIKey, and SMILES and whether they can be found in MassBank</li> <li>All the experimental parameters retrieved for each study in each category along with the general scope of each study</li> <li>The file with the CID, MW, XLogP3 and experimental parameters for each of the 61 papers</li> <li>The CSV file containing all classes of each of the compounds from the papers</li> <li>The CSV with all of the structures used to plot the chemical space of NORMAN SusDat (their CIDs)</li> </ul> <p> </p> <p> </p>
Suspect Screening and Non-targeted Analysis of Chemical Pollutants in Botswana's Aquatic Environments
<p>Raw HRMS data associated with the paper titled </p> <p><strong><span>"Suspect Screening and Non-targeted Analysis of Chemical Pollutants in Botswana’s Aquatic Environments"</span></strong></p>
Data and Code Repository for Expanding non-target analysis methods to characterize the prenatal exposome
<p>Data and Code Repository for the following manuscript: Expanding non-target analysis methods to characterize the prenatal exposome. </p>
Statistical Analysis of Feature-based Molecular Networking Results from Non-Targeted Metabolomics Data
<p>This folder contains the following used for the publication:</p><ul><li>MASSIVE Repositories: MSV000082312 and MSV000085786. This contains the original data in both .raw and .mzxml formats.</li><li>MZmine 3 files: The feature table (SD_BeachSurvey_GapFilled_quant.csv), the associated mgf file, the batch file (.xml) used for MZmine 3 to obtain the feature table, the mgf file for SIRIUS annotations (SD_BeachSurvey_SIRIUS_fixed.mgf)</li><li>SIRIUS and CANOPUS summary files (.tsv files)</li><li>FBMN Result files</li></ul>
Sourdough Culture and Crude Non-targeted Analysis
<p>Positive Mode. Non-targeted analysis of sourdough crude extract and isolated bacterial cultures.</p>
Sourdough Culture Non-targeted Analysis
<p>Positive mode, non-targeted analysis of sourdough crude extracts and cultured isolates.</p>
Genome-wide analysis of mouse 4T1 tumor cells derived clone (4T1ch9) gene expression subjected to transduction with STC1-specific or non-targeting shRNA lentiviral particles
GEO Series GSE55334. Mus musculus. 6 samples. Type: Expression profiling by array.
Genome-wide analysis of chromatin profile in astrocytes isolated from EAE mice transduced with astrocyte-specific Mafg-targeting or non-targeting lentiviruses [ATAC-seq]
GEO Series GSE129608. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Genome-wide analysis of DNA methylation profile in astrocytes isolated from naïve mice or EAE mice transduced with astrocyte-specific Mafg-targeting or non-targeting lentiviruses [WGBS]
GEO Series GSE129606. Mus musculus. 9 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide analysis of chromatin profile in astrocytes isolated from EAE mice transduced with astrocyte-specific Xbp1-targeting or non-targeting lentiviruses.
GEO Series GSE121923. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Next generation sequencing facilities quantitative analysis of SHARPIN knockout or non-target LoVo cells
GEO Series GSE255286. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
GNPS - Non-targeted 2D LC-MS/MS analysis of NEHLA Dissolved Organic Matter (2/2)
Open the record for dataset details and reuse information.
GNPS - Non-targeted 2D LC-MS/MS analysis of NEHLA Dissolved Organic Matter (1/2)
Open the record for dataset details and reuse information.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.