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3 results for “Optimal Growth Temperature”
Microbial Proteomes with/without experimental optimal growth temperature
<p>This repository contains proteomes of microorganisms with/without experimentally determined optimal growth temperature (OGT), used in the paper '<strong>Li G, Rabe KS, Nielsen J & Engqvist MKM (2019) Machine learning applied to predicting microorganism growth temperatures and enzyme catalytic optima. </strong><em>ACS Synth. Biol.</em><strong> 8: 1411–1420</strong>'. There are two .tar.gz files:</p> <p>(1) classified.tar.gz. It contains 5761 proteomes with experimental OGT. The name format of each proteome is '{ogt}_{organism_name}_{organism domain}.fasta'. For example, '36_escherichia_coli_bacteria.fasta' for <em>Escherichia coli.</em></p> <p>(2) not_classified.tar.gz. It contains 1803 proteomes without experimental OGT. The name format is similar as in classified.tar.gz. The only different is to use 'tt' to represent the unknown OGT value. For example, 'tt_candidatus_azobacteroides_bacteria.fasta'.</p> <p>All proteomes are in fasta format. </p> <p>If you used the dataset, please kindly cite the paper mentioned above.</p>
Revealing the moleclar mechanisms of temperature acclimation and adaptation in marine diatoms with transcriptional responses to sub- and supra-optimal growth temperatures
GEO Series GSE125205. Chaetoceros sp.. 18 samples. Type: Expression profiling by high throughput sequencing.
Microarray Transcriptome Comparison Subzero Temperature and Optimal Temperature Growth in Psychrobacter arcticus 273-4
GEO Series GSE12871. Psychrobacter arcticus 273-4. 30 samples. Type: Expression profiling by array.
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