Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
3,663
datasets available to search
ShareScore release 0.9.0
Dataset results
3,663 results for “Phylogenetic analysis”
Criteria for prioritizing selection of Mexican maize landrace accessions for conservation in situ or ex situ based on phylogenetic analysis
<p>Data for processed SSR markers in maize accessions. A database in Structured Query Language (SQL) is provided. Please see the text file "READMEmaizeSSR.pdf".</p>
Phlorest phylogeny derived from Chang et al. 2015 'Ancestry-constrained phylogenetic analysis supports the Indo-European steppe hypothesis'
<p>Cite the source of the dataset as:</p> <blockquote> <p>Chang W, Cathcart C, Hall D, & Garrett A. 2015. Ancestry-constrained phylogenetic analysis supports the Indo-European steppe hypothesis. Language, 91(1):194-244.</p> </blockquote>
Phlorest phylogeny derived from Birchall et al. 2016 'A combined comparative and phylogenetic analysis of the Chapacuran language family'
<p>Cite the source of the dataset as:</p> <blockquote> <p>Birchall, Joshua, Michael Dunn, and Simon J. Greenhill. 2016. A combined comparative and phylogenetic analysis of the Chapacuran language family. International Journal of American Linguistics 82 (3): 255–84. doi: 10.1086/687383</p> </blockquote>
Phlorest phylogeny derived from Kitchen et al. 2009 'Bayesian phylogenetic analysis of Semitic languages identifies an Early Bronze Age origin of Semitic in the Near East'
<p>Cite the source of the dataset as:</p> <blockquote> <p>Kitchen A, Ehret C, Assefa S & Mulligan CJ. 2009. Bayesian phylogenetic analysis of Semitic languages identifies an Early Bronze Age origin of Semitic in the Near East. Proceedings of the Royal Society B: Biological Sciences, 270(1668), 2703-2710.</p> </blockquote>
Phlorest phylogeny derived from Lee & Hasegawa 2011 'Bayesian phylogenetic analysis supports an agricultural origin of Japonic languages'
<p>Cite the source of the dataset as:</p> <blockquote> <p>Lee S, Hasegawa T (2011) Bayesian phylogenetic analysis supports an agricultural origin of Japonic languages. Proceedings of the Royal Society B: Biological Sciences, 278(1725):3662–9.</p> </blockquote>
CLDF dataset derived from Birchall et al.'s "A Combined Comparative and Phylogenetic Analysis of the Chapacuran Language Family" from 2016
<p>Cite the source of the dataset as:</p> <blockquote> <p>Birchall J, Dunn M, & Greenhill SJ. 2016. A Combined Comparative and Phylogenetic Analysis of the Chapacuran Language Family. International Journal of American Linguistics 82(3). 255–284.</p> </blockquote>
CLDF Dataset derived from the Bahnaric data in Sidwell's "Austroasiatic dataset for phylogenetic analysis" from 2015
<p>Cite the source of the dataset as:</p> <blockquote> <p>Sidwell, Paul. 2015. Austroasiatic dataset for phylogenetic analysis: 2015 version. Mon-Khmer Studies (Notes, Reviews, Data-Papers) 44. lxviii-ccclvii.</p> </blockquote>
CLDF dataset derived from Lee and Hasegawa's "Bayesian phylogenetic analysis supports an agricultural origin of Japonic languages" from 2011
<p>Cite the source of the dataset as:</p> <blockquote> <p>Lee, Sean and Hasegawa, Toshikazu (2011). Bayesian phylogenetic analysis supports an agricultural origin of Japonic languages. Proceedings of the Royal Society B: Biological Sciences, 278(1725), 3662–3669. doi:10.1098/rspb.2011.0518.</p> </blockquote>
Supplementary Materials associated with paper 'Complete linear mitochondrial genomes for Cephea cephea and Mastigias albipunctata (Scyphozoa: Rhizostomeae), with an analysis of phylogenetic relationships'
<p>This is a repository for coverage depth graphs and ML-phylogenetic trees that are associated with the paper 'Complete linear mitochondrial genomes for Cephea cephea and Mastigias albipunctata (Scyphozoa: Rhizostomeae), with an analysis of phylogenetic relationships' by Tan KC, Collins AG and Ames CL.</p>
Supplementary Materials to "Subgrouping in a `dialect continuum': A Bayesian phylogenetic analysis of the Mixtecan language family"
<p>SM0: metadata on the languages of the sample</p> <p>SM 1: custom word list</p> <p>SM2: prose explanation of cognate coding and IPA conversion</p> <p>SM3: annotated cognate sets</p> <p>SM4: nexus files of the broad and fine grained cognate coding</p> <p>SM5: NeighborNet visualization with coloring by Josserand (1983)'s groupings and by groupings from our analysis</p> <p>SM6: BEAST2 xml files</p> <p>SM7: MCC trees from BEAST2 analysis</p> <p>SM8: DensiTree visualization and visualization of full MCC tree of best performing model</p>
FIG. 1 in Beyond shells: first detailed morphological description of the mangrove-associated gastropod Haminoea cf. fusca (A. Adams, 1850) (Cephalaspidea, Haminoeidae), with a COI phylogenetic analysis
FIG. 1. — Bayesian phylogenetic tree based on partial sequences of the COI gene. Figures on nodes are posterior probabilities, scale bar refer to branch lengths. Coloured squares refer to species that are Indo West Pacific in origin, whereas grey squares to Atlantic and eastern Pacific species. PP, 1. The specimen here used from the Philippines is depicted in Gosliner et al. 2015: 30, lower right.
Figure 8. E in Phylogenetic analysis of species of the neotropical social wasp Epipona Latreille, 1802 (Hymenoptera, Vespidae, Polistinae, Epiponini)
Figure 8. E. niger, propodeum, dorsal view. Scale bar = 1.0 mm. Figure 9. E. guerini, propodeum, dorsal view. Scale bar = 1.0 mm. Figure 10. E. niger, head, dorsal view. Scale bar = 1.0 mm. Figure 11. E. guerini, head, dorsal view. Scale bar = 1.0 mm. Figure 12. E. tatua, Tergum II, dorsal view. Scale bar = 1.0 mm. Figure 13. E. media, Tergum II, dorsal view. Scale bar = 1.0 mm.
Figure 1 in Phylogenetic analysis of the myrmecophilous Cremastocheilus Knoch (Coleoptera, Scarabaeidae, Cetoniinae), based on external adult morphology
Figure 1. Strict consensus of 24 equally parsimonious trees (153 steps, CI = 0.46, RI = 0.80) of Cremastocheilus. Dark bars indicate monophyletic groups that correspond with Alpert's (1994) subgenera and respective species groups. Jackknife values are shown above branches, with support <50 not shown. Bremer support values are shown in bold below branches. Black dot indicates the genus Cremastocheilus.
Figure 1. E in Phylogenetic analysis of species of the neotropical social wasp Epipona Latreille, 1802 (Hymenoptera, Vespidae, Polistinae, Epiponini)
Figure 1. E. quadrituberculata, humeri, dorsal view. Scale bar = 1.0 mm. Figure 2. E. tatua, humeri, dorsal view. Scale bar = 1.0 mm. Figure 3. E. guerini, propodeal concavity, frontal view. Scale bar = 1.0 mm. Figure 4. E. tatua, propodeal cancavity, frontal view. Scale bar = 1.0 mm. Figure 5. E. quadrituberculata, Tergum I, dorsal view. Scale bar = 1.0 mm. Figure 6. E. tatua, Tergum I, dorsal view. Scale bar = 1.0 mm.
Figure 13 in Phylogenetic analysis of species of the neotropical social wasp Epipona Latreille, 1802 (Hymenoptera, Vespidae, Polistinae, Epiponini)
Figure 13. Cladogram of species of Epipona. Character numbers (see table 1) are placed above hash marks, with the state numbers below, separated by ">" to indi- cate the transitions between states. Filled hash marks indicate an uncontroverted step, while open hash marks indicate homoplastic change.
Fig. 1. Morphological characters used for the phylogenetic analysis and key. A–C. Terminal maxillary palpomere. D–E. Eyes. F–H. Pronotum. I–J. Leg. K–L in Taxonomic revision of the Lycocerus hanatanii species group (Coleoptera, Cantharidae), with the description of new species from Taiwan
Fig. 1. Morphological characters used for the phylogenetic analysis and key. A–C. Terminal maxillary palpomere. D–E. Eyes. F–H. Pronotum. I–J. Leg. K–L. Inner margin of dorsal plate of aedeagus.
Fig. 5 in Phylogenetic analysis and systematic position of two new species of the ant genus Crematogaster (Hymenoptera, Formicidae) from Southeast Asia
Fig. 5. Phylogeny and distribution of the Crematogaster borneensis-group, C. khmerensisi sp. nov., C. fruhstorferi, C. ssAUS5, C. mjobergi and the C. tetracantha-group. Closed circle indicates C. khmerensis sp. nov., closed square indicates C. pfeifferi sp. nov. It is noted that C. pfeifferi sp. nov. is not represented in the phylogeny.
Fig. 4. A–D in Phylogenetic analysis and systematic position of two new species of the ant genus Crematogaster (Hymenoptera, Formicidae) from Southeast Asia
Fig. 4. A–D. Crematogaster khmerensis sp. nov., worker. A. Body in lateral view. B. Full-face view of head. C. Dorsal view of mesosoma. D. Petiole and postpetiole in dorsal view. — E–H. — Crematogaster pfeifferi sp. nov., worker. E. Body in lateral view. F. Full-face view of head. G. Dorsal view of mesosoma. H. Petiole and postpetiole in dorsal view.
Fig. 3 in Phylogenetic analysis and systematic position of two new species of the ant genus Crematogaster (Hymenoptera, Formicidae) from Southeast Asia
Fig. 3. Posterior estimates of divergence time of 24 taxa on the phylogenetic tree. Blue bars depict the 95% highest posterior density (HPD). Estimations were performed with MCMCTree using the independent rate model.
Fig. 1. Bayesian majority rule consensus tree reconstructed for 90 in Phylogenetic analysis and systematic position of two new species of the ant genus Crematogaster (Hymenoptera, Formicidae) from Southeast Asia
Fig. 1. Bayesian majority rule consensus tree reconstructed for 90 taxa using five genes (ArgK, CAD, LWRh, Top1, Wg) in a MrBayes analysis. Above node numbers indicate posterior probability. Data were partitioned by PartitionFinder v.1.1.1 and analyzed using a best fit model for each gene and codon position, with 10 million generations and a burn-in of 25 %. Area enclosed by dashed lines is enlarged on Fig. 2.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.