Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
20
datasets available to search
ShareScore release 0.9.0
Dataset results
20 results for “Phytophthora sojae”
Pathotype complexity and genetic characterization of Phytophthora sojae populations in Illinois, Indiana, Kentucky, and Ohio
<p></p><p> Phytophthora sojae, the causal agent of Phytophthora root and stem rot of soybean, has been managed with single Rps genes since the 1960's, but has subsequently adapted to many of these resistance genes, rendering them ineffective. The objective of this study was to examine the pathotype and genetic diversity of P. sojae from soil samples across Illinois, Indiana, Kentucky, and Ohio by assessing which Rps gene(s) were still effective and identifying possible population clusters. There were 218 pathotypes identified from 473 P. sojae isolates with an average of 6.7 out of 15 differential soybean lines exhibiting a susceptible response for each isolate. Genetic characterization of 103 P. sojae isolates from across Illinois, Indiana, Kentucky, and Ohio with 19 simple sequence repeat markers identified 92 multilocus genotypes. There was a moderate level of population differentiation among these four states, with pairwise F<sub>ST</sub> values ranging from 0.026 to 0.246. There was also moderate to high levels of differentiation between fields, with pairwise F<sub>ST</sub> values ranging from 0.071 to 0.537. Additionally, cluster analysis detected the presence of P. sojae population structure across neighboring states. The level of pathotype and genetic diversity, in addition to the identification of population clusters, supports the hypothesis of occasional outcrossing events that allow for an increase in diversity and the potential to select for a loss in avirulence to specific resistance genes within regions. The trend of suspected gene flow among neighboring fields is expected to be an ongoing issue with current agricultural practices. </p><p></p>
Pathotype complexity and genetic characterization of Phytophthora sojae populations in Illinois, Indiana, Kentucky, and Ohio
Open the record for dataset details and reuse information.
Glyceollin transcription factor GmMYB29A2 is a regulator of soybean resistance to Phytophthora sojae
GEO Series GSE131686. Glycine max. 16 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq of Phytophthora sojae WT and pskmt3
GEO Series GSE205360. Phytophthora sojae strain P6497. 10 samples. Type: Expression profiling by high throughput sequencing.
Phytophthora sojae, race 2, infection of soybean hypocotyls
GEO Series GSE1352. Glycine max; Phytophthora sojae. 50 samples. Type: Expression profiling by array.
Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae
GEO Series GSE48524. Glycine max. 22 samples. Type: Expression profiling by high throughput sequencing.
Transgenic soybeans (Glycine max) secreting Phosphoinositide-3-phosphate binding proteins show enhanced resistance to oomycete pathogen Phytophthora sojae
GEO Series GSE201739. Glycine max. 36 samples. Type: Expression profiling by high throughput sequencing.
ChIP-seq of Phytophthora sojae WT and pskmt3
GEO Series GSE205359. Phytophthora sojae strain P6497. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ChIP-seq of phytophthora sojae P6497
GEO Series GSE143137. Phytophthora sojae. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Digital gene expression profiling of the Phytophthora sojae transcriptome
GEO Series GSE29651. Glycine max; Phytophthora sojae. 10 samples. Type: Expression profiling by high throughput sequencing.
Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
GEO Series GSE11611. Glycine max. 2522 samples. Type: Expression profiling by array.
Transcriptomes of pssu(z)12 mutant from phytophthora sojae P6497 at mycelium stage
GEO Series GSE127207. Phytophthora sojae. 2 samples. Type: Expression profiling by high throughput sequencing.
Gene expression in Phytophthora sojae mycelia, germinating zoospores, and during infection of soybean hypocotyls
GEO Series GSE15100. Phytophthora sojae; Glycine max. 28 samples. Type: Expression profiling by array.
H3K27me3 in Phytophthora sojae P6497 and its pssu(z)12 mutant at mycelium stage
GEO Series GSE127206. Phytophthora sojae. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs: Phytophthora sojae small RNA
GEO Series GSE50032. Phytophthora sojae. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Host and pathogen gene expression during early infection of soybean seedlings by Phytophthora sojae, analyzed by ABI Solid RNA sequencing
GEO Series GSE182773. Glycine max; Phytophthora sojae. 20 samples. Type: Expression profiling by high throughput sequencing.
Fine mapping and candidate gene analysis of two loci conferring resistance to Phytophthora sojae in soybean
GEO Series GSE82240. Glycine max. 2 samples. Type: Expression profiling by high throughput sequencing.
Phytophthora sojae, races 1, 2,5 and 7 on soybean at 48h
GEO Series GSE1475. Phytophthora sojae; Glycine max. 46 samples. Type: Expression profiling by array.
m6A-seq map of wild type P6497 and methyltransferase knockout mutant of Phytophthora sojae
GEO Series GSE221689. Phytophthora sojae. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Microarray Analysis of Phytophthora sojae Gene Expression During Early Infection
GEO Series GSE22978. Glycine max; Phytophthora sojae. 12 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.