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19 results for “Podospora anserina”
Genomic resources of the Podospora anserina species complex
<p>The filamentous fungus <em>Podospora anserina</em> is a model organism used extensively in the study of molecular biology, senescence, prion biology, meiotic drive, mating-type chromosome evolution, and plant biomass degradation. It has recently been established that <em>P. anserina</em> is a member of a complex of seven, closely related species. In addition to <em>P. anserina</em>, high-quality genomic resources are available for two of these taxa. Here we provide chromosome-level annotated assemblies of the four remaining species of the complex, as well as a comprehensive dataset of annotated assemblies from a total of 28 <em>Podospora</em> genomes.</p>
Genomic resources of the Podospora anserina species complex
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Reconstructing NOD-like receptor alleles with high internal conservation in Podospora anserina using long-read sequencing
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Supplementary material 3 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure S3
Supplementary material 2 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure S2
Figure 3 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure 3 Maximum Likelihood phylogeny of the concatenated analysis of ITS, LSU, Btub and rpb2 for the Podosporaceae, with an emphasis on the clades B and C. Type strains are indicated with a bold T and that of the focal species Podospora fimiseda is highlighted with a coloured box. Bootstrap support values are depicted next to their respective branches, but values corresponding to nearly identical sequences are removed for clarity. Branches are proportional to the scale bar (nucleotide substitutions per site).
Supplementary material 1 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure S1
Figure 2 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure 2 Maximum Likelihood phylogeny of the concatenated analysis of ITS, LSU, Btub and rpb2 for the Podosporaceae, with an emphasis on Clade A. Type strains are indicated with a bold T and those of the focal species Podospora anserina and Triangularia bambusae are highlighted with coloured boxes. Bootstrap support values are depicted next to their respective branches, but values corresponding to nearly identical sequences are removed for clarity. Branches are proportional to the scale bar (nucleotide substitutions per site).
Supplementary material 4 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Table S1
Figure 4 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure 4 Phylogenetic signal in the available molecular markers for the relationship between clade A and either clade B or C of the PodosporaceaeA differences in the gene-wise log-likelihood scores (ΔGLS) for each marker, where 0 implies equal support for either of the two alternative sister relationships (A and B or A and C), positive values mean higher support for A and B and negative values higher support for A and C B proportion of sites that support each of the two sister relationships within each marker.
Supplementary material 5 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Table S2
Figure 1 from: Ament-Velásquez SL, Johannesson H, Giraud T, Debuchy R, Saupe SJ, Debets AJM, Bastiaans E, Malagnac F, Grognet P, Peraza-Reyes L, Gladieux P, Kruys Å, Silar P, Huhndorf SM, Miller AN, Vogan AA (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75: 51-69. https://doi.org/10.3897/mycokeys.75.55968
Figure 1 Schematic phylogenetic relationships of the main clades within the Podosporaceae based on Maximum Likelihood analyses of concatenated markers. The three main clades (A, B and C) are strongly supported (bootstrap support values next to relevant branches), but their particular relationship changes depending on the presence of the rpb2 marker. Branches proportional to the scale bar (nucleotide substitutions per site).
Transcriptomic response of Podospora anserina to bacterial and fungal non self
GEO Series GSE78796. Podospora anserina. 12 samples. Type: Expression profiling by high throughput sequencing.
The transcriptional response to the inactivation of the PaMpk1 and PaMpk2 MAP kinase pathways in Podospora anserina
GEO Series GSE21331. Podospora anserina. 48 samples. Type: Expression profiling by array.
Genome-wide gene expression profiling of fertilization competent mycelium in opposite mating types in the heterothallic fungus Podospora anserina.
GEO Series GSE27297. Podospora anserina. 16 samples. Type: Expression profiling by array.
A genetic and functional investigation of the Zn2Cys6 transcription factors RSE2 and RSE3 in Podospora anserina
GEO Series GSE51360. Podospora anserina. 28 samples. Type: Expression profiling by array.
A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina
GEO Series GSE20734. Podospora anserina. 27 samples. Type: Expression profiling by array; Genome variation profiling by array.
Transcriptional analyses of two mutants of Podospora anserina impaired for sexual development
GEO Series GSE104632. Podospora anserina. 17 samples. Type: Expression profiling by array.
Sexual reproduction is controlled by successive transcriptomic waves in Podospora anserina
GEO Series GSE93094. Podospora anserina. 30 samples. Type: Expression profiling by array.
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