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7 results for “Poropuntius”
Chromosome-level genome assembly of Poropuntius huangchuchieni
<p><i>Poropuntius huangchuchieni</i> is a diploid species in the family cyprinid, widely distributed in Mekong and Red River basins. Previous study suggested that it is one of the most closely related diploid ancestral species to common carp, which has allotetraploidized genome generated by merging two diploid genomes during evolution. Therefore, <i>P. huangchuchieni</i> is an ideal diploid model for polyploid evolution study in Cyprinidae. Here, we report a high-quality chromosome-level genome assembly of <i>P. huangchuchieni</i> by the integrating of the Oxford Nanopore Technology and Hi-C technology. The assembled genome size was 1021.38 Mb with a scaffold N50 of 32.93 Mb. More than 47.61% of the genome was identified as repetitive elements, and 895.66 Mb sequences were anchored onto 25 chromosomes. Of the 24,099 predicted protein-coding genes, 97.57% were functional annotated. Approximately 95.9% of complete BUSCOs were detected in the genome.The high-quality genomic data of <i>P. huangchuchieni</i> provides an ancestral diploid reference for the evolution and adaptation of allotetraploid carps.</p>
Chromosome-level genome assembly of Poropuntius huangchuchieni
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FIGURE 5. A in Taxonomic revision of the genus Poropuntius (Teleostei: Cyprinidae) in Peninsular Malaysia
FIGURE 5. A) Large tubercles on snout in reproductive males (UMKL 12234); B) Small tubercles on snout in females (UMKL 12290); and C) heavily tuberculation on posterior half of the body, anal fin and caudal fin in reproductive males (UMKL 12234) of Poropuntius normani.
FIGURE 4 in Taxonomic revision of the genus Poropuntius (Teleostei: Cyprinidae) in Peninsular Malaysia
FIGURE 4. Poropuntius normani; A) Holotype, USNM 90297, Chanthaburi, Thailand. Photo by Sandra J. Raredon, National Museum of Natural History, Smithsonian Institution; B) UMKL 12006, 109.85 mm SL, Gunung Ledang, Johor, Malaysia.
FIGURE 3 in Taxonomic revision of the genus Poropuntius (Teleostei: Cyprinidae) in Peninsular Malaysia
FIGURE 3. Neighbor-joining phylogenetic tree of Poropuntius based on COI sequences. Bootstrap values (neighbor-joining [NJ]/maximum likelihood [ML]) are shown on the nodes.
FIGURE 1 in Taxonomic revision of the genus Poropuntius (Teleostei: Cyprinidae) in Peninsular Malaysia
FIGURE 1. Geographic distribution of known localities of Poropuntius normani in Peninsular Malaysia and several localities in Southeast Asia (black dots), and the type locality of P. normani in Pliew Waterfall, Kao Sabap, Chanthaburi, Thailand (black star). Map made with QGIS Development Team (2018) (Accessed on 11 January 2018).
FIGURE 2. Scatterplots with 95 in Taxonomic revision of the genus Poropuntius (Teleostei: Cyprinidae) in Peninsular Malaysia
FIGURE 2. Scatterplots with 95% confidence interval ellipses of the sheared second principal component (PC2) and sheared third principal component (PC3) of morphometric data on Poropuntius from Peninsular Malaysia and Thailand. Poropuntius smedleyi (black dots), P. normani (red +, and red dot indicates specimens from type locality) and P. cf. normani (blue triangle).
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