Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2
datasets available to search
ShareScore release 0.9.0
Dataset results
2 results for “PsychENCODE”
PsychENCODE models
<p>Please cite the following: </p> <p>Zhou, D. and Gamazon, E. R. (2020) PsychENCODE models (Version 1) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3859065</p> <p>Zhou, D., Jiang, Y., Zhong, X., Cox, N. J., Liu, C., & Gamazon, E. R. (2020). <em>A unified framework for joint-tissue transcriptome-wide association and Mendelian randomization analysis</em>. Nature Genetics. (<a href="https://www.nature.com/articles/s41588-020-0706-2">https://www.nature.com/articles/s41588-020-0706-2</a>)</p> <p>Correspondence should be addressed to: ERG (ericgamazon@gmail.com) and DZ (dan.zhou@vumc.org) </p>
isoTWAS models using 48 GTEx tissues and PsychENCODE data (07.04.22)
<p>isoTWAS models for 48 GTEx tissues, adult frontal cortex tissue from the CommonMind Consortium (subset of PsychENCODE project; Gandal et al 2018, <em>Science</em>), and fetal frontal cortext from Walker et al 2019, <em>Cell</em>.</p> <p>Each folder corresponds to a separate tissue and contains 1 .tsv.gz file per gene that contains the isoTWAS model. Refer to https://bhattacharya-a-bt.github.io/isotwas/ on how to use these models.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.