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2 results for “Purge Haplotigs”
Dataset for "Progessive improvement of the Australian blacklip abalone (Haliotis rubra) genome assembly with Nanopore long reads, hybrid meta assembly and haplotig purging
<p>This Zenodo archive contains the blacklip abalone genome assemblies and and their BUSCO completeness calculations. Genome annotation (gff3 format), CDS, protein sequences and Orthofinder2 output were also included.</p>
Data for Purge Haplotigs Case Study
<p>Data for the Purge Haplotigs case study.</p> <p><strong>arabidopsis/ cabsauv/ cpyxidata/ zfinch/</strong></p> <p>All files related to the FALCON Unzip assemblies for Purge Haplotigs processing, processing with a similar tool, repeat annotation, BUSCO and Quast analysis, genome alignments, and short read mapping. All sequencing reads are available from the Sequence Read Archive and are therefore omitted. BAM alignment files are omitted due to size constraints. These are available on request, or can be generated following the directions in the paper's supplementary workflow document.</p> <p><strong>arabidopsis_trio_comparison/</strong></p> <p>Genome alignments and comparisons using the Arabidopsis trio dataset.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.