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Dataset results
18 results for “RPB2”
Fig. 5. Maximum Likelihood tree for genus Thyridium with RPB2 dataset. Node numbers indicate bootstrap value above 70 in First report of seven unrecorded bambusicolous fungi in Korea
Fig. 5. Maximum Likelihood tree for genus Thyridium with RPB2 dataset. Node numbers indicate bootstrap value above 70%. Blue colored names indicate the strains isolated in this study. Type strains are indicated by "T".
FIGURE 2. The nrLSU-RPB2 in A new species, Russula luteolamellata (Russulaceae, Russulales) from China
FIGURE 2. The nrLSU-RPB2-mtSSU multi-loci phylogenetic tree obtained from the Bayesian analysis. Numbers above branches are Bayesian Posterior Probability (pp) values and Maximum Likelihood Bootstrap (MLB). Numbers above branches represent strong, and moderate support (pp≥0.95 and/or MLB≥50%). The red font indicates the position of newly obtained sequences. The GenBank accession number for the sequence information used is indicated in Table 1.
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 in Trichoderma changiae (Hypocreales), a new species isolated from a native orchid in Taiwan
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 sequences using Maximum-likelihood analysis. The new species Trichoderma changiae is highlighted in bold blue. Bootstrap values above 50% from RAxML-HPC2 on XSEDE (left) and posterior probabilities above 0.95 from Bayesian analysis (right) are displayed at the nodes. The scale bar represents 0.05 substitutions per nucleotide position. Trichoderma vulgatum was used as the outgroup. "T" denotes type strains.
FIGURE 1. Phylogenetic tree generated from the combined nrSSU, rpb1 and rpb2 in Ophiocordyceps highlandensis, a new entomopathogenic fungus from Yunnan, China
FIGURE 1. Phylogenetic tree generated from the combined nrSSU, rpb1 and rpb2 dataset using ML method. Bootstrap values (≥ 50%) derived from ML analyses and posterior probabilities from Bayesian inference (≥ 0.90) are shown above or beneath the branches at nodes. Ophiocordyceps highlandensis is highlighted in boldface. "Stroma 1" and "Stroma 2" are used to relate individual stromata of the same collection to their corresponding sequence data.
FIGURE 4. A combined nrLSU and RPB2 in A new species of Inocybe representing the Nothocybe lineage
FIGURE 4. A combined nrLSU and RPB2-sequence based phylogram generated from ML analysis showing the placement of Inocybe distincta within the Nothocybe clade. Except the Mallocybella clade, which was proposed as the genus Tubariomyces by Alvarado et al. (2010), all other clade nomenclature follows Matheny et al. (2009). Values at nodes indicate bootstrap support. BS values ≥50% are shown.
FIGURE 1. Maximum Likelihood tree inferred from the rpb2 in Pseudolepiota zangmui gen. et sp. nov. (Agaricaceae, Basidiomycota), a new white-spored mushroom from China
FIGURE 1. Maximum Likelihood tree inferred from the rpb2 data set. Bootstrap values>50 are indicated along nodes. The new taxa are shown in bold face.
FIGURE 4. rpb2 in A new species and a new record of Clitopilus and a description of C. orientalis from India based on morphology and molecular phylogeny
FIGURE 4. rpb2-based phylogram generated from Maximum Likelihood (ML) analysis depicting the placement of Clitopilus albidus, C. subscyphoides and C. orientalis within the genus Clitopilus. Values at nodes indicate both Bayesian Inference (BI) posterior probability values and the ML bootstrap (BS) support of that clade. BI values ≥0.5 and BS values ≥50% are shown.
FIGURE 1. Maximum parsimony reconstructed from the combined sequences RPB2 and TEF1 in New species of Trichoderma in the Harzianum, Longibrachiatum and Viride clades
FIGURE 1. Maximum parsimony reconstructed from the combined sequences RPB2 and TEF1, with the newly described species displayed in boldface. MPBP above 50% (left) and BIPP above 90% (right) are given at the nodes.
FIGURE 2 in Diversity of Gyroporus (Gyroporaceae, Boletales): rpb2 phylogeny and three new species
FIGURE 2. Gyroporus madagascariensis sp. nov. basidiocarps. Counterclockwise from bottom-left: Buyck 08.211 (holotype); Buyck 08.211 (holotype), hymenophore view; Buyck 08.202, hymenophore view; Buyck 08.202. Images: Bart Buyck.
FIGURE 3 in Diversity of Gyroporus (Gyroporaceae, Boletales): rpb2 phylogeny and three new species
FIGURE 3. Gyroporus borealis sp. nov. Specimen NY1393558 (holotype). Top: hymenophore view. Bottom: pileus view. Images: Terrence Delaney.
FIGURE. Maximum clade credibility tree of a post-burnin Bayesian analysis (100 million generations), based on nuclear (agt1, ETS, g3pdh, phyC, rpb2) and plastid (atpB–rbcL, matK, rps16, ycf1 pos. 1113-2103, ycf1 pos. 4492-5440) data. Above the branches, Bayesian posterior probabilities (PP) and maximum-likelihood bootstrap support (BS) are shown (PP/BS). The scale bar below the tree shows the branch length for 0.004 substitutions per nucleotide position. Capital letters at the branches are referred to in the tree description. in Re-evaluation of the Amazonian Hylaeaicum (Bromeliaceae: Bromelioideae) based on neglected morphological traits and molecular evidence
FIGURE. Maximum clade credibility tree of a post-burnin Bayesian analysis (100 million generations), based on nuclear (agt1, ETS, g3pdh, phyC, rpb2) and plastid (atpB–rbcL, matK, rps16, ycf1 pos. 1113-2103, ycf1 pos. 4492-5440) data. Above the branches, Bayesian posterior probabilities (PP) and maximum-likelihood bootstrap support (BS) are shown (PP/BS). The scale bar below the tree shows the branch length for 0.004 substitutions per nucleotide position. Capital letters at the branches are referred to in the tree description.
FIGURE 1. Maximum Likelihood phylogram obtained from the general nrITS and RPB2 in Inocybe cervenianensis (Agaricales, Inocybaceae), a new species in the I. flavoalbida clade from Italy
FIGURE 1. Maximum Likelihood phylogram obtained from the general nrITS and RPB2 sequence alignment of Inocybe spp. Mallocybe arthrocystis and Mallocybe leucoblema were used as outgroup taxa. Only MLB values ≥70% and BPP values ≥0.95 are given above clade branches. Newly sequenced collections are in bold. For each collection, the specific epithet (as present in GenBank), voucher, GenBank accession numbers of the RPB2/ITS sequences are reported. The /- notation indicates the sequence as missing for that collection.
FIGURE 1. The nrLSU-rpb2 in A new species of Russula subgenus Russula (Russulaceae, Russulales) from Yanshan Mountains, North China
FIGURE 1. The nrLSU-rpb2-mtSSU-tef1α multi-locus phylogenetic tree obtained from Bayesian analysis. Numbers above branches represent strong support (pp≥0.95 or MLB≥50 %). Numbers above branches are Bayesian Posterior Probability (PP) values and Maximum Likelihood Bootstrap (MLB). The red font indicates the position of the new sequences. See Table 1 for sequence data. Asterisks (*) denotes branches with PP = 1.00, MLB = 100 %.
Data from: The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities
Open the record for dataset details and reuse information.
Fig. 2. Maximum Likelihood tree for genus Fusicolla with RPB2 dataset. Node numbers indicate bootstrap value above 70 in First report of seven unrecorded bambusicolous fungi in Korea
Fig. 2. Maximum Likelihood tree for genus Fusicolla with RPB2 dataset. Node numbers indicate bootstrap value above 70%. Blue colored name indicates the strains isolated in this study. Type strains are indicated by "T".
The RPB2 flap loop of human RNA polymerase II is dispensable for transcription initiation and elongation.
GEO Series GSE29734. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Fig. 1 Maximum likelihood tree inferred using the rpb2 in New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia
Fig. 1 Maximum likelihood tree inferred using the rpb2 gene region of the Indonesian isolates in the Fusarium fujikuroi species complex (FFSC), Fusarium incarnatum-equiseti species complex (FIESC), Fusarium sambucinum species complex (FSSC), and Fusarium oxysporum species complex (FOSC) isolates from a previous study (Maryani et al. 2019). Bootstrap support values and Bayesian posterior probabilities are given at each node. The tree is rooted to Fusarium acuminatum (NRRL 54210) and Fusarium heterosporum (NRRL 20692).
Genome-wide profiling of Fpt1, Rpb2, Rpo31 and Rpl13a in glucose [ChIP-seq]
GEO Series GSE227423. Saccharomyces cerevisiae. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
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