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764 results for “Reproducible”
Dataset and program scripts for the reproducibility of the hierarchical data structure file. Related to the manuscript entitled: Hierarchical Representation of Measurement Data, Metrological Uncertainty and Metadata for Calibrated Battery Tests
<p>We present an interoperable hierarchical data representation for battery tests, leading to improved scalability of data transmission and enhanced data accessibility and comprehensibility for both human interpretation and machine processing. The hierarchical data format includes the raw trace electrical measurement data, the metrological calibration and uncertainty data, the metadata such as experimental settings, instruments and software versions, as well as post-processed data such as electrochemical model fit parameters. This data representation allows repetition of the battery test under the exact same conditions such that identical results are achieved within defined error bounds. This is in line with the general F.A.I.R. data approach and provides repeatability and traceability in the battery value chain. As an application of the hierarchical data representation, we show the classification of cells as pass/fail being performed with quantitative confidence levels. We demonstrate the complete workflow of establishing the hierarchical data structure for electrochemical impedance spectroscopy (EIS), starting from metrological traceability of the calibration and uncertainty analysis towards the storage of the structured data as a single integrated file that preserves the hierarchical data format.</p>
Interlaboratory study: Testing reproducibility of solid biofuels component identification using reflected light microscopy
<p><strong>Submitted data was used to write an article: </strong>Drobniak, A., Mastalerz, M., Jelonek, Z., Jelonek, I., Adsul, T., Andolšek, N., Ardakani, O.H., Congo, T., Demberelsuren, B., Donohoe, B.S., Douds, A., Flores, D., Ganzorig, R., Ghosh, S., Gize, A., Goncalves, P.A., Hackely, P., Hatcherian, J., Hower, J.C., Kalaitzidis, S., Kędzior, S., Knowles, W., Kuś, J., Lis, K., Lis, G., Liu, B., Luo, Q., Du, M., Mishra, D., Misz-Kennan, M., Mugerwa, T., O'Keefe, J., Park, J., Pearson, R., Petersen, H., Reyes, J., Ribeiro, J., Niedzwiedzkas, J.L., de la Rosa Rodriguez, G., Sosnowski, P., Valentine, B., Varma, A., Wojtaszek-Kalaitzidi, M., Xu, Z., Zdravkov, A., Ziemianin, K., Interlaboratory study: Testing reproducibility of biomass fuels component identification using reflected light microscopy. International Journal of Coal Geology 277, 104331. <a href="https://doi.org/10.1016/j.coal.2023.104331">https://doi.org/10.1016/j.coal.2023.104331</a>.</p> <p> </p> <p><strong>Funding acknowledgments: </strong>The project is co-financed by the Polish National Agency for Academic Exchange within the Polish Returns Programme (BPN/PPO/2021/1/00005/DEC/1), the National Science Center, Poland (2022/01/1/ST10/00024), and the research activities co-financed by the funds granted under the Research Excellence Initiative of the University of Silesia in Katowice, Poland. </p> <p> </p> <p><strong>Article Abstract: </strong>Considering global market trends and concerns about climate change and sustainability, increased biomass use for energy is expected to continue. As more diverse materials are being utilized to manufacture solid biomass fuels, it is critical to implement quality assessment methods to analyze these fuels thoroughly. One such method is reflected light microscopy (RLM), which has the potential to complement and enhance current standard testing, leading to improving fuel quality assessment and, ultimately, preventing avoidable air pollution. An interlaboratory study (ILS) was conducted to test the reproducibility of biomass fuels component identification using a reflected light microscopy technique. The exercise was conducted on thirty photomicrographs showing biomass and various undesired components (like plastics or mineral matter), which were purposely added (by the ILS organizers) to contaminate wood pellets and charcoal-based grilling fuels. Forty-six participants had various levels of difficulty identifying the marked components, and as a result, the percentage of correct answers ranged from 52.2 to 94.4%. Among the most difficult components to distinguish were petroleum products and inorganic matter. Various reasons led to the misidentification, including insufficient morphological descriptions of the components provided to participants, ambiguities of the nomenclature, limitations of the analytical and exercise method, and insufficient experience of the participants. Overall, the results indicate that RLM has the potential to enhance the quality assessment of biomass fuels. However, they also demonstrate that the petrographic classification used in this exercise requires further refinement before it can be standardized. While a new simplified classification of solid biomass fuels components was created as an outcome of this study, future research is necessary to refine the nomenclature, develop a microscopic morphological description of the components, and verify the accuracy of component identification with a follow-up ILS.</p>
Model Reproducibility Study on Left Atrial Fibres
<p>This dataset contains 100 models of the left atrium. Models come from 50 distinct patients, divided amongst 5 users to assess for inter- and intra-operator variability. The split used was 30 pairs (60 models) for inter-operator variability and 20 pairs (40 models) for intra operator variability. Models were created with a specific version of the software CemrgApp (cemrgapp.com), in which users processed a contrast enhanced magnetic resonance angiogram, and a late gadolinium enhanced (LGE) contrast magnetic resonance (CMR).</p> <p>Two types of simulations were run on each of the 100 processed cases: baseline pacing to calculate local activation time (LAT) maps and atrial fibrillation simulations for which phase singularity (PS) maps were calculated. The openCARP simulator (Plank et al., 2021) was used to run the simulations, using the Courtemance human atrial model with AF electrical remodelling.</p> <p>This dataset contains the labelled surface meshes, output to the CemrgApp software, which in turn are utilised as inputs for the electrophisiological simulations.</p> <p>The dataset is split into 100 folders labelled M1 to M100. Included in file `Cases_and_Users_Paths.csv` is the pairs for each of the comparisons, whether inter- or intra-observer variability.</p>
mzrtsim: Raw Data Simulation for Reproducible Gas/Liquid Chromatography–Mass Spectrometry Based Non-targeted Metabolomics Data Analysis
<p>All the data for 'mzrtsim: Raw Data Simulation for Reproducible Gas/Liquid Chromatography–Mass Spectrometry Based Non-targeted Metabolomics Data Analysis'</p> <p>sim.zip is stimulated data for intensity cutoff 0.05. simxcms.csv is peak intensity profiles for their simulated peaks.</p> <p>sim3.zip are simulated data for normal/leading/tailing peaks with tailing factor of 1, 0.8, and 1.5, respectively.</p> <p>All the csv files begin with sim3 are extracted peaks list from the sim3.zip with corresponding data analysis software.</p> <p>csv.zip recorded the m/z, retention time, intensity, and compounds name for simulated compound for each condition (sim.zip and sim3.zip).</p> <p>sep1.mzML: simulation for 8 isomers with similar m/z while different retention times. 7 peaks are non baseline separation peaks. Peaks profile is saved in spe1.csv file.</p> <p>xcms.csv, mzmine.csv, openms.csv: peaks found in sep1.mzML by xcms, mzmine 4.5 and openms, respectively.</p> <p>R code: <a href="https://github.com/yufree/democode/blob/master/meta/simfin.R">https://github.com/yufree/democode/blob/master/meta/simfin.R</a></p> <p>Website of mzrtsim package: https://yufree.github.io/mzrtsim/</p>
Data needed to reproduce the flood hazard modeling of Pollack et al., 2024
<p>This repository contains some of the data needed (Data_Flood_Modeling) to reproduce the flood hazard modeling of Pollack et al., 2024 "[Funding rules that promote equity in climate adaptation outcomes](https://osf.io/preprints/osf/6ewmu)." which are required to run the codes https://github.com/CoRE-Lab-UCF/Pollack_et_al_2024.git </p> <p>Specifically, this repository contains:</p> <ol> <li>dem_subgrid_1m_nbd.asc (DEM at 1m resolution in ascii format. Source DEM is CoNED, see Supporting material of Pollack et al., 2024)</li> <li>Gloucester_street_light_utm.tif (Basemap in UTM coordinates, UTM18N with EPSGcode=26918)</li> <li>sfincs.inp (Model file of SFINCS)</li> <li>Unique_Land_Classes_CN.xls (Table including the land cover classes and corresponding Manning coefficients used for surface roughness)</li> </ol>
Multi-stakeholder research data management training as a tool to improve the quality, integrity, reliability and reproducibility of research: Quantitative data of the post-course surveys
<p>Data contains doctoral students' and postdoc researchers' (n=168) self-ratings of their RDM competencies before and after the 3 ECTS credits "Basics of Research Data Management" (BRDM) trainings held 2019-2021 in the University of Turku and Åbo Akademi University, Finland. Moreover, data contains respondents' self-reported further learning needs.</p>
Mitigating Network Noise on Dragonfly Networks through Application-Aware Routing (code, data and scripts to reproduce paper results)
<p>This repository contains the data, code, and scripts required to reproduce the results of the paper "Mitigating Network Noise on Dragonfly Networks through Application-Aware Routing" by Daniele De Sensi, Salvatore Di Girolamo and Torsten Hoefler, presented at the 2019 International Conference for High Performance Computing, Networking, Storage, and Analysis. </p> <p>This repository does not contains the code of the library used to automatically tune the routing algorithm, which can be found at http://doi.org/10.5281/zenodo.3372785</p>
Publishing Reproducible Research Outputs - Interviewees and interview questions
<p>The table '<strong>Interview questions</strong>' shows the focus of our investigation and stakeholder engagement activities. It should be noted that not all interview questions were asked to all stakeholder groups based on appropriateness and time available. Some questions in the table may appear to be repeated: this is because slightly different phrasing was used based on the stakeholder interviewed.</p> <p>Legend:</p> <ul> <li>Research Funding Organisations: RFO</li> <li>Research Performing Organisations: RPO</li> <li>Infrastructure Providers: IP </li> <li>Academic Publishers: AP</li> <li>Researchers and research groups: RRG</li> </ul> <p>The table '<strong>List of interviewees</strong>' includes all stakeholders engaged in the context of this research.</p>
Publishing Reproducible Research Outputs - Thematic coding of interview findings
<p>The spreadsheet in the present dataset (CSV format) includes the anonymised thematic coding that has been applied to our interview findings. A list of interviewees and interview questions is available <a href="https://doi.org/10.5281/zenodo.5141665">here</a>.</p> <p>The thematic coding has been applied by using <a href="https://www.qsrinternational.com/nvivo-qualitative-data-analysis-software/home">NVivo</a>, a professional qualitative analysis software, and then exported in spreadsheet form for public sharing. The findings of this analysis have been used to inform our final report, which is available in our <a href="https://zenodo.org/communities/ke-prro/?page=1&size=20">Zenodo project Community</a>.</p>
Data to reproduce analysis in "Systematic analysis of transcriptional and epigenetic effects of genetic variation in Kupffer cells enables discrimination of cell intrinsic and environment-dependent mechanisms"
<p>Here you can find the datasets necessary to reproduce all analyses described in the Glass lab paper by <a href="https://www.biorxiv.org/content/10.1101/2022.09.22.509046v1">Bennett et al</a>. The python and R code for reproducing analysis and figures can be found on our linked <a href="https://github.com/HunterBennett/KupfferCell_NaturalGeneticVariation">github repository.</a></p> <p>Briefly, this paper explores the effect of natural genetic variation <em>in vivo</em>, using Kupffer cells as a model cell type. We collect and analyze transcriptional and epigenetic data (ATAC-seq, H3K27Ac ChIP-seq) to identify putative <em>trans</em> regulators driving differential gene expression across inbred strains of mice. Additionally, we provide evidence that <em>trans</em> effects control a majority of strain differential genes at homeostasis while <em>cis</em> effects dominate the transcriptional response to an external signal (lipopolysaccharide).</p> <p>References:</p> <p>Hunter Bennett, Ty D. Troutman, Enchen Zhou, Nathanael J. Spann, Verena M. Link, Jason S. Seidman, Christian K. Nickl, Yohei Abe, Mashito Sakai, Martina P. Pasillas, Justin M. Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K. Glass bioRxiv 2022.09.22.509046; doi: <a href="https://doi.org/10.1101/2022.09.22.509046">https://doi.org/10.1101/2022.09.22.509046</a></p> <p> </p>
Elevation Models for Reproducible Evaluation of Terrain Representation - Inventory of Renderings
<p>This is an inventory of 155 renderings from 78 publications on terrain visualization techniques. The renderings guided the selection of landform types in the elevation models that are proposed in the following article:</p> <p><em>Kennelly, P. J., Patterson, T., Jenny, B., Huffman, D. P., Marston, B. E., Bell, S. and Tait, A. M. (2021). Elevation models for reproducible evaluation of terrain representation. Cartography and Geographic Information Science, 48:1, 63–77. DOI: <a href="http://doi.org/10.1080/15230406.2020.1830856">10.1080/15230406.2020.1830856</a></em></p> <p>Visualization techniques include colored aspect, contour lines, hypsometric tints, plan oblique relief, relief shading, rock and scree representation, and spot heights. The inventory contains information about display scale of the sample renderings, landform types, cell size, and geographic location of the digital elevation models. Also inventoried are how authors evaluated their renderings, how scale was indicated on the renderings, and whether the cell size and source of elevation data was included.</p> <p>The inventory is formatted as a single table in CSV UTF-8 and MS Excel .xlsx formats. Papers are grouped by visualization type; attributes of each rendering are stored on a single row.</p>
Princeton Handbook for Reproducible Neuroimaging: Sample Output
<p>This archive contains sample output files for the <a href="http://doi.org/10.5281/zenodo.3677090">sample data</a> accompanying the <a href="https://brainhack-princeton.github.io/handbook/">Princeton Handbook for Reproducible Neuroimaging</a>. Outputs include the NIfTI images converted using <a href="https://github.com/nipy/heudiconv">HeuDiConv</a> (v0.8.0) and organized according to the <a href="https://bids.neuroimaging.io/">BIDS</a> standard, quality control evaluation using <a href="https://mriqc.readthedocs.io/">MRIQC</a> (v0.15.1), data preprocessed using <a href="https://fmriprep.readthedocs.io/en/stable/">fMRIPrep</a> (v20.2.0), and other auxiliary files. All outputs were created according to the procedures outlined in the handbook, and are intended to serve as a didactic reference for use with the handbook. The sample data from which the outputs are derived were acquired (with informed consent) using the<a href="https://github.com/ReproNim/reproin"> ReproIn</a> naming convention on a Siemens Skyra 3T MRI scanner. The sample data include a T1-weighted anatomical image, four functional runs with the “prettymouth” spoken story stimulus, and one functional run with a block design emotional faces task, as well as auxiliary scans (e.g., scout, soundcheck). The “prettymouth” story stimulus created by <a href="https://doi.org/10.1177%2F0956797616682029">Yeshurun et al., 2017</a> and is available as part of the<a href="https://openneuro.org/datasets/ds002345"> Narratives</a> collection, and the emotional faces task is similar to<a href="https://doi.org/10.1016/j.nicl.2015.05.004"> Chai et al., 2015</a>. The brain data are contributed by author S.A.N. and are authorized for non-anonymized distribution.</p>
Publishing reproducible logbooks explainer comic strip
<p>This comic strip explains at a high level how to publish reproducible<br> notebooks using tools and services such as Jupyter and Binder.</p> <p>Files:<br> - reproducible_logbook.png: main picture<br> - reproducible_logbook_scenario.png: zoom on the scenario part of the picture<br> - reproducible_logbook.kra: original Krita source file<br> - reproducible_logbook_texts.svg: svg export (just the texts)<br> - reproducible_logbook_wo_text.png: png export without the texts (e.g. for translations)</p>
From Reproducibility Problems to Improvements: A journey
<p>Reproducibility and repeatability are key properties of benchmarks. However, achieving reproducibility can<br> be difficult. We faced this while applying the microbenchmark MooBench to the resource monitoring framework SPASS-meter. In this paper, we discuss some interesting problems that occurred while trying to reproduce previous benchmarking results. In the process of reproduction, we extended MooBench and made improvements to the performance of SPASS-meter. We conclude with lessons learned for reproducing (micro-)benchmarks.</p>
BUMP: A Benchmark of Reproducible Breaking Dependency Updates
<p>Bump is a benchmark of breaking dependency updates. A breaking update is defined as a pair of commits for a Java project, which we designate as the pre-commit and the breaking-commit. When we build the project with the pre-commit, compilation and test execution are successful, while the build of the breaking-commit fails. Each breaking-commit is a one-line change in the Maven pom file.</p>
Dataset and code to reproduce analysis on the impact of indoor residual spraying (IRS) on malaria at Illovo Nchalo, Malawi
<p><strong>V3 edit: </strong>The latest R file contains extra lines of code to produce prediction intervals. </p> <p> </p> <p><strong>The repository contains:</strong></p> <p>- Excel sheets for each round of indoor residual spraying from 2014 - 2018 for villages based on the Illovo Nchalo Estate (provided by public health officer)</p> <p>- Weather data for 1999 - 2019 downloaded from Sasri Weather web for Malawi - Illovo Nchalo (Open access after signing up)</p> <p>- Explanation of variables downloaded from Sasri Weather Web</p> <p>- Expected population: number of residents living in Illovo clinic's catchment areas based on 2016 and 2019 census. Linear interpolation for the other years</p> <p>- Malaria data per month per clinic from the public health officer's records at Illovo Nchalo for 7 clinics for 2014 - 2018</p> <p>- Malaria data downloaded and selected from DHIS2 (access upon request and approval)</p> <p>- R file to reproduce figures, tables, and results for the paper under submission for PLOS GPH</p> <p>- Geopackages of data that is not open-source already to reproduce the map in figure 1</p> <p> </p> <p><strong>Description of IRS data:</strong></p> <p>- Village: Name of the villages based at Illovo being targeted for IRS</p> <p>- Target_spray: Number of structures within the village targeted for spraying</p> <p>- Sprayed: Number of structures actually sprayed</p> <p>- Date_start: Start date of the IRS campaign in a village</p> <p>- Date_end: End date of the IRS campaign in that village</p> <p>- Coverage_p: Percentage of structures sprayed calculated from "target_spray" and "sprayed"</p> <p> </p> <p><strong>Notes on reconciling the different years of IRS:</strong></p> <p>1. Post office and D. compound have been added to Nkombedzi</p> <p>2. B compound has been added to Riverside/Mess</p> <p>3. The following villages attend the following clinics</p> <p> </p> <p><strong>The following villages attend the assigned clinics:</strong><br>- Mess and Bonksville -> Factory<br>- Mlambe and Paxman -> Mangulenje<br>- Sande Ranch -> Lengwe<br>- Mechanical Pool -> Mwanza</p> <p> </p> <p><strong>Description of the malaria data:</strong></p> <p>- Date, month, year</p> <p>- Time_dummy: 1 to 48, over the study period</p> <p>- Village: The name of the village the clinic is based in. In further analyses, this is referred to as "clinic" instead to avoid confusion.</p> <p>- Total_cases: total number of cases testing positive for malaria by RDT, or in a very small percentage of cases microscopy (only used when RDT gives inconclusive or conflicting results, or when symptoms persist with negative RDT). Cases_on + cases_off = total_cases</p> <p>- Cases_on: Number of malaria cases from residents of villages located within the boundaries of the Illovo estate</p> <p>- Cases_off: Number of malaria cases from residents of villages located (just) outside the boundaries of the Illovo estate</p> <p>- Total_patients: Total number of patients attending the clinic that month</p> <p> </p> <p>From the selected control clinics only "WHO NMCP P Confirmed malaria cases" was used to indicate the number of malaria cases and "CMED Total Population" to indicate the clinic catchment population. Further info on DHIS2 website. </p> <p> </p> <p>For further information don't hesitate to contact Remy Hoek Spaans. </p> <p> </p> <p> </p> <p> </p>
Code to reproduce the analyses of "Multiple stressors alter greenhouse gas concentrations in streams through local and distal processes"
<p>Streams are significant contributors of greenhouse gases (GHG) to the atmosphere, and the increasing number of stressors degrading freshwaters may exacerbate this process, posing a threat to climatic stability. However, it is unclear whether the influence of multiple stressors on GHG concentrations in streams results from increases of in-situ metabolism (i.e., local processes) or from changes in upstream and terrestrial GHG production (i.e., distal processes). Here, we hypothesize that the mechanisms controlling multiple stressor effects vary between <span>carbon dioxide (</span>CO<sub>2</sub>) and <span>methane (</span>CH<sub>4</sub>), with the latter being more influenced by changes in local stream metabolism, and the former mainly responding to distal processes. To test this hypothesis, we measured stream metabolism and the concentrations of CO<sub>2</sub> (<em>p</em>CO<sub>2</sub>) and CH<sub>4</sub> (<em>p</em>CH<sub>4</sub>) in 50 stream sites that encompass gradients of <span>nutrient enrichment, oxygen depletion, thermal stress, riparian degradation and discharge</span>. Our results indicate that these stressors had additive effects on stream metabolism and GHG concentrations, with stressor interactions explaining limited variance. Nutrient enrichment was associated with higher stream heterotrophy and <em>p</em>CO<sub>2</sub>, whereas <em>p</em>CH<sub>4</sub> increased with oxygen depletion and water temperature. Discharge was positively linked to primary production, respiration and heterotrophy but correlated negatively with <em>p</em>CO<sub>2.</sub> Our models indicate that CO<sub>2</sub>-equivalent concentrations can more than double in streams that experience high nutrient enrichment and oxygen depletion, as compared to those with oligotrophic and oxic conditions. Structural equation models revealed that the effects of nutrient enrichment and discharge on <em>p</em>CO<sub>2</sub> were related to distal processes rather than local metabolism. In contrast, <em>p</em>CH<sub>4</sub> responses to nutrient enrichment, discharge and temperature were related to both local metabolism and distal processes. Collectively, our study illustrates <span>potential climatic feedbacks resulting from freshwater degradation and </span>provides insight into the processes mediating stressor impacts on the production of GHG in streams.</p>
Reproduction package for paper "How far are we from reproducible research on code smell detection? A systematic literature review"
<p>Checklist and data extracted from publications analyzed for "How far are we from reproducible research on code smell detection? A systematic literature review" paper, together with processing scripts and calculations of Cohen's Kappa.</p> <p>Paper that describes details of the data is available here: https://doi.org/10.1016/j.infsof.2021.106783</p>
NeuroMET - SPECIAL MRS Reproducibility
<p>Magnetic Resonance Spectroscopy Data acquired in 9 healthy volunteers using a SPECIAL Localization with three different adiabatic inversion pulses (hyperbolic secant, WURST, GOIA) at a 7T Magnetom whole-body system (Siemens Healthineers, Erlangen, Germany). Every volunteer was examined 4 times (twice on day one including a repositioning between the measurements, and twice on day two a week later without repositioning between alike measurements) to investigate the repeatability and reproducibility. Please find more details in L.T. Riemann, C.S. Aigner, S.L.R. Ellison, R. Brühl, R. Mekle, S. Schmitter, O. Speck, G. Rose, B. Ittermann, A. Fillmer, "Assessment of Measurement Precision in Single Voxel Spectroscopy at 7 T: Towards Minimal Detectable Changes of Metabolite Concentrations in the Human Brain In-Vivo", Magn Reson Med DOI: DOI: 10.1002/mrm.29034 (in press).</p> <p>Correspondence: layla.riemann@ptb.de, ariane.fillmer@ptb.de</p> <p>Code to generate the restricted maximum-likelihood estimation (REML) and the Bland-Altman (BA) plots of the spectral shape can be found under https://gitlab1.ptb.de/LRiemann/repeatability_reproducibility.git</p> <p>Following data sets are provided:</p> <p>1. ConcentrationsPaper-mrm29034_20211012_Riemann-Fillmer.xls</p> <p>Data that is used with the R code to obtain the REML analysis of the metabolite concentrations. Note that the zeros indicate that the metabolite concentration could not be quantified.</p> <p>2. RawData-mrm29034_20211012_Riemann-Fillmer.zip folder</p> <p>Raw spectral data from Magnetom Siemens 7 T scanner<br> file names have the following structure: "SubjectNumber_Session_ScanBlock_Pulse.dat", e.g. "p1_T1_1_GOIA.dat"</p> <p>3. npy-files-mrm29034_20211012_Riemann-Fillmer.zip folder</p> <p>Spectral data in a python format to generate the BA plots with the shared code;<br> data names have the following structure: "SubjectNumber_PulseSessionScanBlock", e.g. "p1_GOIAT11.npy" for Subject p1, GOIA Pulse (AHS for hyperbolic secant), Session T1, ScanBlock 1</p> <p>4. AnonymizedVolunteerData-mrm29034_20211012_Riemann-Fillmer.xlsx</p> <p>Anonymized measurement data for each individual volunteer and measurement:<br> age, gender, transmit voltage, linewidth, peak voltages for all three pulses (HS, GOIA, WURST), CSF -, gray and white matter fraction in the scanned voxel for each subject.</p>
Data to reproduce the results presented in Lake et al. 2021. Journal of Soils and Sediments, https://doi.org/10.1007/s11368-021-03107-6 ("High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting – implications for sediment fingerprinting")
<p>This repository contains data on (1) the absorbance data and (2) the measured concentrations, to reproduce computational results as presented in:<br> "High frequency un-mixing of soil samples using a submerged spectrophotometer in a laboratory setting – implications for sediment fingerprinting".</p> <p> <br> 1. Absorbance data (200-730 nm wavelengths):</p> <p> * Average absorbance compensated for measured concentrations (average absorbance value per concentration)<br> * Average absorbance compensated for theoretical concentrations (average absorbance value per concentration)<br> * Average raw absorbance measured (average absorbance value per concentration)<br> * Raw absorbance measured (all absorbance values for all concentrations)</p> <p> Data in all 3 files is indicated per soil sample / mixture, with corresponding fraction(s) of soil sample(s) and corresponding (theoretical) input concentration.<br> <br> 2. Measured concentration data:</p> <p> * Measured concentration (average concentrations, tested for all experiments and for all theoretical input concentrations)</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.