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24
datasets available to search
ShareScore release 0.9.0
Dataset results
24 results for “Single-Cell DNA Sequencing”
Phertilizer: growing a clonal tree from single-cell DNA sequencing data of tumors
<p>The is the supplementary data repository for the simulation input data for Phertilizer: growing a clonal tree from single-cell DNA sequencing data of tumors.</p>
Models and Data associated with: Single-cell gene expression prediction from DNA sequence at large contexts
<p>This archive holds trained models and associated data for the <a href="https://www.biorxiv.org/content/10.1101/2023.07.26.550634v1">manuscript</a>:<br> "Single-cell gene expression prediction from DNA sequence at large contexts"</p> <p>Structure:</p> <ul> <li>configs - example configs for the workflows to produce publication data </li> <li>data_* - pre-processed single cell data used for publication</li> <li>models_* - model checkpoints, hyperparameters and training progress in tensorboard logs</li> <li>preprocessing - additional data required to reproduce the pre-processing workflow</li> </ul> <p> </p> <p>"Copyright 2023 GlaxoSmithKline Research & Development Limited. All rights reserved."</p>
scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution - Supplementary data and code
<p>Data and code to reproduce the analyses from the study: "scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution". </p>
HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes
GEO Series GSE158004. Mus musculus; Homo sapiens. 79 samples. Type: Expression profiling by high throughput sequencing.
Single-cell DNA methylome sequencing and bioinformatic inference of epigenetic cell state dynamics
GEO Series GSE65196. Homo sapiens; Mus musculus. 224 samples. Type: Methylation profiling by high throughput sequencing.
Single-cell DNA replication sequencing (scRepli-seq): a method for mapping replication timing domains genome wide in single mammalian cells
GEO Series GSE138634. Homo sapiens. 26 samples. Type: Other.
A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing
GEO Series GSE131678. Homo sapiens; Mus musculus. 16 samples. Type: Methylation profiling by high throughput sequencing.
Single Nucleotide Polymorphism (SNP) and Antibody-based Cell Sorting (SNACS): A tool for demultiplexing single-cell DNA sequencing data
GEO Series GSE255224. Homo sapiens. 15 samples. Type: Other.
HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes (bulk RNA-seq dataset)
GEO Series GSE158001. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Analysis of population heterogeneity in CHO cells by genome-wide DNA methylation analysis and by multi-modal single-cell sequencing [time series]
GEO Series GSE273684. Cricetulus griseus. 21 samples. Type: Methylation profiling by high throughput sequencing.
Functional phenotyping of genomic variants using joint multiomic single-cell DNA-RNA sequencing
GEO Series GSE268646. Homo sapiens; Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
Single-cell multi-omics sequencing of human spermatogenesis reveals a DNA demethylation event associated with male meiotic recombination
GEO Series GSE235324. Homo sapiens; Mus musculus. 1454 samples. Type: Methylation profiling by high throughput sequencing; Other.
HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes (scRNA-seq dataset)
GEO Series GSE158002. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes (HyPR-seq dataset)
GEO Series GSE158003. Mus musculus; Homo sapiens. 72 samples. Type: Expression profiling by high throughput sequencing.
Analysis of population heterogeneity in CHO cells by genome-wide DNA methylation analysis and by multi-modal single-cell sequencing [WGBS]
GEO Series GSE273851. Cricetulus griseus. 8 samples. Type: Methylation profiling by high throughput sequencing.
Analysis of Chinese sheep preimplantation embryo development and block by single-cell DNA methylome sequencing
GEO Series GSE190746. Ovis aries. 15 samples. Type: Methylation profiling by high throughput sequencing.
Analysis of population heterogeneity in CHO cells by genome-wide DNA methylation analysis and by multi-modal single-cell sequencing
GEO Series GSE273685. Cricetulus griseus. 35 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes
GEO Series GSE204691. Mus musculus; Homo sapiens. 8 samples. Type: Methylation profiling by high throughput sequencing.
Analysis of population heterogeneity in CHO cells by genome-wide DNA methylation analysis and by multi-modal single-cell sequencing [multiome]
GEO Series GSE272869. Cricetulus griseus. 6 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell DNA methylation sequencing reveals epigenetic variations in mouse oocyte superovulated with different doses of FSH/hMG
GEO Series GSE136730. Mus musculus. 40 samples. Type: Methylation profiling by high throughput sequencing.
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OpenNeuro
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