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131 results for “Surface Structure”

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zenodo48/100

Upper lithospheric structure of northeastern Venezuela from joint inversion of surface wave dispersion and receiver functions

<p>Dataset from the publication:&nbsp;<strong>Upper lithospheric structure of northeastern Venezuela from joint inversion of surface wave dispersion and receiver functions</strong>.&nbsp;DOI:&nbsp;<a href="https://doi.org/10.5194/egusphere-2022-230">10.5194/egusphere-2022-230</a></p> <p>&nbsp;</p> <p>Includes: <em><strong>EGFs, Dispersion Curves measurements, RFs, Vs3dmodel and Moho depths</strong></em></p> <p>&nbsp;</p>

opencc-by-4.0Oct 2022View details →
zenodo48/100

The tectonic evolution of the Arctic since Pangea breakup: Integrating constraints from surface geology and geophysics with mantle structure

<div>Description of Resources - Shephard et al. (2013)</div> <div>&nbsp;</div> <div>This file provides a detailed description of all of the files that make up the data collection associated with the publication: Shephard, G. E., M&uuml;ller, R. D., &amp; Seton, M. (2013). The tectonic evolution of the Arctic since Pangea breakup: Integrating constraints from surface geology and geophysics with mantle structure. Earth-Science Reviews, 124(0), 148-183. doi: <a href="https://doi.org/10.1016/j.earscirev.2013.05.012" target="_blank" rel="noopener">10.1016/j.earscirev.2013.05.012</a></div> <div>&nbsp;</div> <div>Note: For information on file formats and what programs to use to interact with various file formats, see "File Formats and Recommended Programs&rdquo;.</div> <div>&nbsp;</div> <div>Note: This paper is based on a global model (Seton et al., 2012), which should also be referenced if looking globally or regions other than the Arctic or northern Panthalassa.</div> <div>&nbsp;</div> <div>The files that make up the tectonic reconstruction model include:</div> <div>&bull; <strong>Rotations </strong>- This is a global rotation model (based on Seton et al., 2012) that includes the new rotations for the Arctic.</div> <div>* Shephard_etal_ESR2013.rot (373 KB)</div> <div>&nbsp;</div> <div>&bull; <strong>Coastlines </strong>- These are present day coastlines that have been assigned plate reconstruction ids to allow them to be reconstructed using the rotation file.</div> <div>* Shephard_etal_ESR2013_Coastlines.gpml (34.1 MB)</div> <div>* Shephard_etal_ESR2013_Coastlines.txt (3.2 MB)</div> <div>* Shephard_etal_ESR2013_Coastlinesc.kml (6.3 MB; datum - WGS 1984)</div> <div>* Shephard_etal_ESR2013_Coastlines.shp (3.2 MB inc auxiliary files; datum - WGS 1984)</div> <div>&nbsp;</div> <div>&bull; <strong>Static polygons </strong>- These are closed polygons that split present day Earth's surface into regions that can be assigned to a given plate id, and therefore reconstructed back through time using the rotation file. These polygons can be used to cookie-cut and assign plate ids to geometry and raster data (for more information on this feature please visit http://gplates.org or http://earthbyte.org).</div> <div>* Shephard_etal_ESR2013_staticpolygons.gpml (19.4 MB)</div> <div>* Shephard_etal_ESR2013_staticpolygons.txt (2.7 MB)</div> <div>* Shephard_etal_ESR2013_staticpolygons.kml (4.4 MB; datum - WGS 1984)</div> <div>* Shephard_etal_ESR2013_staticpolygons.shp (2.3 MB inc auxiliary files; datum - WGS 1984)</div> <div>&nbsp;</div> <div>&bull; <strong>Plate boundary geometries and resolved topologies</strong> &ndash; Resolved topologies comprise ridges, transforms, subduction zones and other plate boundary geometries. These boundaries intersect to form closed plate polygons ('resolved topologies') that are valid at 1 Myr intervals (0-200 Ma). The plate boundary geometries and plate polygons have been assigned plate reconstruction ids to allow them to be reconstructed using the rotation file.</div> <div>* Shephard_etal_ESR2013_platebounds.gpml (27.7 MB) - contains both plate boundaries and resolved topological plate polygons</div> <div>* Resolved topologies:</div> <div>- topology_*.00Ma.txt (20.6 MB)</div> <div>- topology_*.00Ma.shp (12.5 MB inc auxiliary files; datum - WGS 1984)</div> <div>&nbsp;</div> <div>&nbsp;</div> <div>References</div> <div>&nbsp;</div> <div>M. Seton, R.D. M&uuml;ller, S. Zahirovic, C. Gaina, T.H. Torsvik, G. Shephard, A. Talsma, M. Gurnis, M. Turner, S. Maus, M. Chandler, (2012). Global continental and ocean basin reconstructions since 200 Ma. Earth-Science Reviews, 113(3&ndash;4), 212-270. doi:<a href="https://doi.org/10.1016/j.earscirev.2012.03.002" target="_blank" rel="noopener">10.1016/j.earscirev.2012.03.002</a></div>

opencc-by-4.0Jun 2013View details →
zenodo48/100

Optimized structures of the stationary points on the potential energy surface of the OH(2Π) + C2H4 reaction

<p>This Zip file contains the cartesian coordinates of optimized stationary points of&nbsp;the OH(<sup>2</sup>&Pi;) + C<sub>2</sub>H<sub>4</sub> potential energy surface published in our article&nbsp;&ldquo;OH(<sup>2</sup>&Pi;) + C<sub>2</sub>H<sub>4</sub>&nbsp;Reaction: A Combined Crossed Molecular Beam and Theoretical Study&rdquo; (P<em>hys. Chem. A</em>&nbsp;2023, 127, 21, 4609&ndash;4623), that can be found in&nbsp;<a href="https://doi.org/10.1021/acs.jpca.2c08662">https://doi.org/10.1021/acs.jpca.2c08662</a>.</p> <p>All calculations have been performed with&nbsp; Gaussian 09, Revision D.01.</p> <p>All structures have been optimized&nbsp;at B3LYP/aug-cc-pVTZ level of theory.</p>

opencc-by-4.0Aug 2023View details →
zenodo48/100

Optimized structures of the stationary points on the potential energy surface of the O(3P, 1D) + HCCCN(X1Σ+) reaction

<p>This Zip file contains the cartesian coordinates of optimized stationary points of the O(<sup>3</sup>P, <sup>1</sup>D) + HCCCN(X<sup>1</sup>&Sigma;<sup>+</sup>) potential energy surface published in our article&nbsp;&ldquo;Reactions O(<sup>3</sup>P, <sup>1</sup>D) + HCCCN(X<sup>1</sup>&Sigma;<sup>+</sup>) (Cyanoacetylene): Crossed-Beam and Theoretical Studies and Implications for the Chemistry of Extraterrestrial Environments&rdquo; (<em>J. Phys. Chem. A</em>&nbsp;2023, 127, 3, 685&ndash;703), that can be found in&nbsp;<a href="https://doi.org/10.1021/acs.jpca.2c07708">https://doi.org/10.1021/acs.jpca.2c07708</a>.</p> <p>All calculations have been performed with&nbsp; Gaussian 09, Revision D.01.</p> <p>All structures have been optimized&nbsp;at B3LYP/aug-cc-pVTZ level of theory.</p>

opencc-by-4.0Aug 2023View details →
zenodo48/100

Optimized structures of the stationary points on the potential energy surface of the dissociation of the CH3OH˙+ cation

<p>This Zip file contains the optimized&nbsp;stationary points structures of the potential energy surface (PES) for the dissociation of the &nbsp;CH3OH˙+ cation.</p> <p>The PES&nbsp;has been published in our paper &ldquo;Fragmentation of interstellar methanol by collisions with He˙<sup>+</sup>: an experimental and computational study&rdquo; (<em><strong>Phys. Chem. Chem. Phys.</strong></em>, 2022, <strong>24</strong>, 22437-22452), that can be found in&nbsp;https://doi.org/10.1039/D2CP02458F .</p> <p>All calculations have been performed with&nbsp;Gaussian 09, Revision D.01 and the&nbsp;structures were&nbsp;optimized&nbsp;at &omega;B97X-D/aug-cc-pVTZ&nbsp;level of theory.</p>

opencc-by-4.0Aug 2023View details →
zenodo44/100

Observation of a regular structure formation on the surface of vibrated ball beds started from random lose packing

<p>Near 4,000 2-mm diameter plastic balls were poured 88 times into plexiglass cylinder of internal diameter 26 mm. Then, such initially random loose-packing systems/beds were vibrated vertically with 100 Hz frequency using the vibration table Vibrax (Renfert GmbH, Germany) working in sinusoidal mode until a regular structure was observed on the cylinder surface. The power levels of the vibrations in the recorded ordering of balls were selected to represent all four levels (1, 2, 3 or 4) of vibrations available in the table, where number 1 means the weakest vibration and 4 means the strongest one.</p> <p>Locations of the balls on all sides of a vibrated cylindrical bed were simultaneously recorded on one video frame thanks to the use of two perpendicular mirrors, which enables observation of four images: one of the real cylinder and three of its mirror reflections. View of the table with the attached cylinder containing balls and two mirrors is presented in Fig. 1, while an explanation of the scene, as seen by the recording camera, is given in the scheme in Fig. 2. Video names were given in a standard form explained in the README.txt file.</p>

opencc-by-4.0Jul 2024View details →
zenodo44/100

Data sets used for: Urban runoff velocity measurement with consumer-grade surveillance cameras and surface structure image velocimetry

<p>Original videos&nbsp;and reference bulk velocity and water depth data sets used to develop the study:&nbsp;<em>Urban runoff velocity measurement with consumer-grade surveillance cameras and surface structure image velocimetry.</em></p> <p>The reference bulk velocity and water depth data sets were obtained with the&nbsp;Nivus OFR Radar and Nivus NivuCompact sensors, respectively.</p>

opencc-by-4.0May 2018View details →
zenodo44/100

Comparing the integration of bone cells on an even and a nano structured surface

<p>Bone cells develop better on a nano structured surface.</p> <p>Successful cellular integration is extremely important to the long-term viability of dental implants. The sooner cells can attach and surround the implant, the faster the patient recovers, and the lower the incidence of infection and site contamination. The specific biological response of the surrounding tissues depends enormously on the surface characteristics of the particular biomaterial. Moreover mouth infections are currently regarded as the main reason why dental implants fail. Therefore, antibacterial properties are another requirement for preventing potential bacterial infection.</p> <p>The multi-beam optical module developed within LASER4SURF, will be able to obtain functionalized metallic surfaces with textures around 1&mu;m or less, enabling the required tolerances to reach the best cell adhesion and antibacterial properties. Thus, it will lead to extended implant life, reduced rejection and improved overall quality of life for patients.</p>

opencc-by-4.0Jun 2018View details →
zenodo44/100

Computed surface and chemical potentials, expansion coefficients, structures, models and results for the PMFPredictor Toolkit

<p>The PMFPredictor toolkit enables the prediction of the potentials of mean force describing the interaction between a surface and a small molecule in aqueous solution, which would otherwise be obtained from lengthy metadynamics simulations. This repository contains files to enable the operation of the toolkit, with source code available at https://github.com/ijrouse/PMFPredictor-Toolkit and corresponding to release v0.5-alpha.</p> <p>In PMFPredictor-Repository.zip we provide supplementary data necessary for the operation of the PMFPredictor Toolkit including:</p> <ul> <li>Structures of surfaces (&quot;Structures/Surfaces&quot;) and chemicals (&quot;Structures/Chemicals&quot;) in a united tabulated (.csv) format, listing x/y/z co-ordinates, atom IDs, mass (in amu), charge (in elementary units), Lennard Jones 6-12 parameters: sigma (in nm) and epsilon (in kJ/mol).</li> <li>Interaction potentials of surfaces (&quot;SurfacePotentials&quot;) and chemicals (&quot;ChemicalPotentials&quot;) with probe atoms and molecules in tabulated format with distances relative to reference points in nm and energies in kJ/mol. Also included in these folders are the potentials with the molecular probes in individual files.</li> <li>Hypergeometric expansion coefficients of the interaction potentials (&quot;Datasets/SurfacePotentialCoefficientsNoise-1-oct12.csv&quot; and&nbsp;&quot;Datasets/ChemicalPotentialCoefficients-oct10.csv&quot;) in tabulated form, corresponding to potentials with units of nm for distance and kJ/mol for energy. Descriptions of the headers are provided in DatasetHeaderDescription.txt, included in the archive.</li> <li>Trained TensorFlow models for the prediction of potentials of mean force from HG interaction coefficients, suitable for loading via the Keras backend.</li> <li>PMFs generated for a range of surfaces and chemicals as output from the trained model, in both text format and figures showing comparisons to training PMFs where available. PMFs are supplied as tabulated data with comma separated values of distance in nm and interaction energies in kJ/mol.</li> <li>Adsorption energies in kJ/mol evaluated at T=300K extracted from all PMFs and compared to the values obtained from known PMFs where available.</li> </ul> <p>The surface_pmfpredictor.zip&nbsp; archive contains PMFs selected for the operation of the UnitedAtom software package for the calculation of protein-nanoparticle interactions. This data is included in the main repository file and provided separately to avoid the download of unnecessary data if only the final PMFs are required. As with the main set, these are provided in tabulated form with distance [nm], energy [kJ/mol] pairs. This repository also contains the sets of figures illustrating these PMFs for each surface. Both archives contain further information on the contents, including descriptions of the surfaces and chemicals for which PMFs are computed. We also supply the training data used to build the model in a separate archive, PMFPredictor-TrainingData.zip, along with a text file containing descriptions of all headers in this file. This training data is quite large when uncompressed, c.a. 7 Gb, hence its exclusion from the main archive.</p> <p>If you use results from this repository please cite the following paper in addition to the repository itself:</p> <p>I. Rouse, V. Lobaskin, Machine-learning based prediction of small molecule -- surface interaction potentials, &nbsp;&nbsp;&nbsp; &nbsp;arXiv:2211.07999<br> https://arxiv.org/abs/2211.07999</p>

opencc-by-4.0Oct 2022View details →
zenodo44/100

Supplementary material for "Surface frustration re-patterning underlies the structural landscape and evolvability of fungal orphan candidate effectors"

<p><strong>Tables</strong></p> <p>Table S1. List of fungal genomes analyzed in this work, associated references and properties.</p> <p>Table S2. List of all secreted proteins less than 300 amino-acids from the 20 fungal genomes. The table includes Signalp4.0 output, mature sequence, Espritz % disorder, pfam domains, AlphaFold top prediction pLDDT and the associated pdb file in Dataset S1.</p> <p>Table S3. Top Hits to pdb database for all OCE structures. &#39;network_node_name&#39; corresponds to the portein identifier in the OCE structure similarity network provided in Dataset S3. &#39;Hidef_raw_community&#39; corresponds to groups of structural OCE analogs identified by HiDEF community detection performed on the network provided in Dataset S3.</p> <p>Table S4. Table S4. List of the 62 major OCE folds with associated statistics. Columns I to AB provide the number of occurrences per species. Note that the actual number of members per species might be underestimated due to the stringent pipeline used for OCE identification (excluding proteins larger than 300 amino acids or containing PFAMs for instance).</p> <p>&nbsp;</p> <p>Table S5. Relative surface exposure, conformational flexibility and conservation data mapped on residues of members of the Alt-A1 and BoNT families. RMSD, root mean square deviation for all aligned atoms; Conservation, percentage conservation in multiple structure alignment.</p> <p>Table S6. Assignment of NCBI accessions to MMseqs clusters and assignment of MMseqs clusters to HMM matching-based super-clusters.</p> <p>Table S7. Co-mutation occurrences and associated p-values in two OCE clades from the Alt-A1 and KP6 families.</p> <p>Table S8. Amino acid properties inferred from mutation scans and frustration analyses in Alt-A1 cluster yellow1 and KP6 cluster 43. &#39;Number of aa variants&#39; corresponds to the number of different amino acids found at each position (deletion counts as 1). &#39;Alanine scan ∆Z&#39; and &#39;Deletion scan ∆Z&#39; correspond to the difference between Z-score for the native protein agains itself and Z-score for the native protein against mutant at each position (either Alanine replacement or 5-aa deletion). &#39;Destabilization factor&#39; is the average of column E and F. &#39;Stabilization factor&#39; corresponds to the difference between expected structural variation due to destabilization factor and the observed structural variation in multiple mutants. &#39;netEffect&#39; is difference between column G and H. &#39;Max co-mutation %&#39; is the highest frequency of co-mutation observed with other residues in natural variants, with &#39;Min co-mutation p-value (Bonferroni corrected)&#39; the associated p-value.Table S9. &nbsp;Sequence and delta Z of natural variants and mutants from AA1_cl25</p> <p>Table S9. List of natural variants and <em>in silico</em> mutants from the Alt-A1 cluster 25 analyzed in this work, including protein sequence and structure comparison scores (comparison with the reconstructed clade ancestor n0).</p> <p>Table S10. List of natural variants and in silico mutants from the KP6 cluster 43 analyzed in this work, including protein sequence and structure comparison scores (comparison with the reconstructed clade ancestor n0).</p> <p>Table S11. Summary statistics for the phylogenetic trees of 15 OCE clades analyzed for structure and frustration evolution.</p> <p>Table S12. Mapping of structural and frustration data onto phylogenetic trees for 15 OCE clades. The corresponding trees and protein structures are provided in Dataset S7.</p> <p><strong>Datasets</strong></p> <p>Dataset S1. AlphaFold rank1 models for 3 927 OCEs (.pdb format).</p> <p>Dataset S2. Pairwise structure comparison for 3 911 OCE. DALI matrix output containing pairwise Z-scores.</p> <p>Dataset S3. Network file including 2&nbsp;561 OCEs with 3 or more vertices of Z-score weight 5.2 or more, in .sif and .xgmml formats.</p> <p>Dataset S4. Videos illustrating the mapping of relative surface exposure and structural variability in Alt-A1 and BoNT groups, amino-acids conservation, co-selected mutation patches and residue net stabilization effects on Alt-A1 clade 25 ancestor and KP6 cluster 43 ancestor. Color scales are as in Figure 2 and 3 respectively (.mp4 format).</p> <p>Dataset S5. Phylogenetic trees (.nwk), ancestral (.fasta) and modern variant (.faa) sequences, and AlphaFold best protein models (.pdb) for members of KP6 cluster 43 and Alt-A1 cluster 25. The archive includes 140 Alt-A1 protein structure and 128 KP6 protein structures.</p> <p>Dataset S6. Best predicted structures for 917 natural variants and mutants of AA1_cl25 and 801 natural variants and mutants of KP6_cl43 (.pdb format).</p> <p>Dataset S7. Phylogenetic trees (.nwk) and AlphaFold best protein models (.pdb) for 15 OCE clades. The file includes 2&nbsp;598 protein structures distributed from clades AA1_s (139), AA1_t (135), AA1_y1 (140), AA1_y2 (90), AA1_y3 (128), BoNT_s (291), CIP_s (167), CIP_t (231), crystallin (233), GNK2 (189), KP6_cl3 (203), KP6_cl26 (111), KP6_cl43 (123), KP6_cl96 (231), KP6_cl242 (187).</p> <p><strong>Text and Figures</strong></p> <p>Text S1. Contains supplementary methods, results and figures S1 to S13.</p>

opencc-by-4.0Jan 2023View details →
zenodo44/100

Optimized structures of selected stationary points on the potential energy surface of the HC3N + CN reaction

<p>This Zip file contains the cartesian coordinates of optimized stationary points of&nbsp;the HC<sub>3</sub>N + CN&nbsp;potential energy surface published in our article&nbsp;&ldquo;Semiempirical Potential in Kinetics Calculations on the HC<sub>3</sub>N + CN Reaction&rdquo; (<em>Molecules</em> <strong>2022</strong>, <em>27(7)</em>, 2297), that can be found in&nbsp;<a href="https://doi.org/10.3390/molecules27072297">https://doi.org/10.3390/molecules27072297</a>&nbsp;.</p> <p>All calculations have been performed with&nbsp; Gaussian 09, Revision D.01.</p> <p>All structures have been optimized&nbsp;at M06-2X/6-311+G(d,p) level of theory.</p>

opencc-by-4.0Sep 2023View details →
zenodo40/100

Dataset From: Structural and double layer forces between silica surfaces in suspensions of negatively charged nanoparticles

<p>The dataset for the publication &quot;Structural and double layer forces between silica surfaces in suspensions of negatively charged nanoparticles&quot;. DOI: 10.1021/acs.langmuir.0c02917.</p> <p>Files containing data have .dat extension and are in text format</p>

opencc-by-4.0Nov 2020View details →
zenodo40/100

Dataset containing DTS-data used in Karttunen et al. "Quantifying coastal urban surface layer structure using distributed temperature sensing in Helsinki, Finland"

<p>This record contains DTS-data used in the following study:</p> <p>Karttunen et al. (2021): Quantifying coastal urban surface layer structure using distributed temperature sensing in Helsinki, Finland, submitted to AMTD</p> <p>&nbsp;</p> <p>DTS_highfreq_SMEARIII_Karttunen_et_al.zip contains continuous high frequency potential temperature profiles measured along the SMEAR III 31-metre tall mast. See more information on the data in the netCDF-file attributes and on the measurement setup in the related manuscript.</p> <p>DTS_statistics_SMEARIII_Karttunen_et_al.nc contains profiles for the turbulence temperature statistics calculated from the continuous DTS potential temperature profiles.See more information in the netCDF-file attributes and the related manuscript.</p> <p>&nbsp;</p>

opencc-by-4.0Dec 2021View details →
zenodo40/100

Comparative analysis of surface sanitization protocols on the bacterial community structures in the hospital environment

<p>In this study, we used 16S rRNA gene sequencing approaches to characterize the bacterial microbiota on different surfaces of the hospital environment. The longitudinal data was then subjected to comprehensive comparisons between different sanitation strategies (disinfectants, detergents and probiotics) to measure their potential effect on the microbial community structures in the hospital environment.</p> <p>This archive contains results and data of the 16S rRNA amplicon sequencing performed on&nbsp;1019 environmental and 271 patient&nbsp;DNA&nbsp;samples collected over the time course of 40&nbsp;weeks in a newly opened ward in the neurological station at the Charit&eacute; Hospital (Berlin). The files include a study information and sample metadata sheets, BIOM-tables and information about the taxonomy results and diversity metrics.</p>

opencc-by-4.0Jan 2022View details →
zenodo40/100

Data from "CO Line Emission Surfaces and Vertical Structure in Mid-Inclination Protoplanetary Disks"

<p>CO line emission image cubes (&quot;[DISK]_CO_cube.fits&quot;), line+continuum&nbsp;image cubes (&quot;[DISK]_CO_cube_wcont.fits&quot;), and zeroth moment maps (&quot;[DISK]_CO_M0.fits&quot;) associated with Law et al., 2022, &quot;CO Line Emission Surfaces and Vertical Structure in Mid-Inclination Protoplanetary Disks,&quot;&nbsp;The Astrophysical Journal</p> <p>CO line emission image cubes from the DSHARP ALMA Large Program (for HD 142666, MY Lup, GW Lup, WaOph 6, DoAr 25) can be found at:&nbsp;https://bulk.cv.nrao.edu/almadata/lp/DSHARP/ and are not included here.</p> <p>The raw data are available on the ALMA archive (see Table 1 in the paper for a&nbsp;listing of the relevant&nbsp;ALMA project codes).</p>

opencc-by-4.0Apr 2022View details →
zenodo40/100

Structure of MAPbI3 surface models in VASP format

<p>Structure of MAPbI<sub>3</sub> surface models in VASP format, with the&nbsp;slab thickness of 6 stoichiometric units,&nbsp;along (001) planes.&nbsp;These models were generated for the study published in reference 1.</p> <p>(1) Lodeiro, L.; Barr&iacute;a-C&aacute;ceres, F.; Jim&eacute;nez, K.; Contreras, R.; Montero-Alejo, A. L.; Men&eacute;ndez-Proupin, E. Methodological Issues in First-Principle Calculations of CH3NH3PbI3 Perovskite Surfaces: Quantum Confinement and Thermal Motion. <em>ACS Omega</em> <strong>2020</strong>, <em>5</em> (45), 29477&ndash;29491. https://doi.org/10.1021/acsomega.0c04420.</p>

opencc-by-4.0Aug 2022View details →
zenodo40/100

Data for Directional Surface Wave Spectra And Sea Ice Structure from ICEsat-2 Altimetry

<p>This is data used for <em>Directional Surface Wave Spectra And Sea Ice Structure from ICEsat-2 Altimetry</em> in the Cryosphere.</p> <p>The code that reproduces this data can be found at</p> <pre>10.5281/zenodo.6908645</pre> <p>See README.md for further instructions.</p> <p>&nbsp;</p>

opencc-by-4.0Dec 2021View details →
zenodo40/100

Text-fig. 2. SEM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Flowers in oblique lateral view showing remains of calyx and slightly semi-inferior ovary with elongated apical style (a); note larger openings in the floral tissue (asterisk) interpreted as schizogenous secretory cavities and the stomata-like secretory structures on the upper portion of the ovary (arrows) that are interpreted as nectariferous (b). c: Detail of ovary surface showing secretory stomata-like structures (arrows). d: Flower in lateral view showing fragmentary calyx and broken slightly semi-inferior ovary with secretory stomata-like structures; note the point of attachment of the central placenta (pl). e: Cluster of seeds removed from the ovary in (d) showing reticulate surface. f: Outer (abaxial) surface of calyx lobe showing the slightly pointed papillae and scattered, fine trichomes (arrows). g: Triaperturate pollen grains from the ovary surface. Specimens, Mira 100-S153146 (a, b), Mira 100-S170155 (c), Mira 100-S101266 (d, e), Mira 105-S100732 (f), Mira 100-S170125 (g). Scale bars = 600 µm (a, b, d), 300 µm (f), 100 µm (c, e), 10 µm (g). in Early Flowers Of Primuloid Ericales From The Late Cretaceous Of Portugal And Their Ecological And Phytogeographic Implications

Text-fig. 2. SEM images of Miranthus elegans gen. et sp. nov.; Mira locality, Portugal. a, b: Flowers in oblique lateral view showing remains of calyx and slightly semi-inferior ovary with elongated apical style (a); note larger openings in the floral tissue (asterisk) interpreted as schizogenous secretory cavities and the stomata-like secretory structures on the upper portion of the ovary (arrows) that are interpreted as nectariferous (b). c: Detail of ovary surface showing secretory stomata-like structures (arrows). d: Flower in lateral view showing fragmentary calyx and broken slightly semi-inferior ovary with secretory stomata-like structures; note the point of attachment of the central placenta (pl). e: Cluster of seeds removed from the ovary in (d) showing reticulate surface. f: Outer (abaxial) surface of calyx lobe showing the slightly pointed papillae and scattered, fine trichomes (arrows). g: Triaperturate pollen grains from the ovary surface. Specimens, Mira 100-S153146 (a, b), Mira 100-S170155 (c), Mira 100-S101266 (d, e), Mira 105-S100732 (f), Mira 100-S170125 (g). Scale bars = 600 µm (a, b, d), 300 µm (f), 100 µm (c, e), 10 µm (g).

opencc-by-4.0Dec 2021View details →
zenodo40/100

Text-fig. 1. CT slices on Block 1. Details of the internal bone structure (a, b), teeth (b, c). Invertebrate imprints (a, c). Holes, cracks and empty cavities in both the limestone matrix and within the vertebrate fossil (b). in Hidden Treasures Uncovered: Successful Detection Of Fossils Below The Surface In Large Limestone Blocks Using A Standard Medical X-Ray Ct Scanner

Text-fig. 1. CT slices on Block 1. Details of the internal bone structure (a, b), teeth (b, c). Invertebrate imprints (a, c). Holes, cracks and empty cavities in both the limestone matrix and within the vertebrate fossil (b).

opencc-by-4.0Dec 2021View details →
zenodo40/100

Text-fig. 3. CT slices on Block 3. Invertebrate moulds (a, c) and remains of their hard skeletons (a, b). Large areas of limestone matrix hold either only a few scattered invertebrates or no fossil at all (b, c). Ring artefacts seen close to the isocentre of the scan (b, c) are a well-known phenomenon caused by the X-ray beams traversing the block at an insufficient radiation dose (as expected in such a large block of dense material), and are not part of any physical structure present therein (Triche et al. 2019). in Hidden Treasures Uncovered: Successful Detection Of Fossils Below The Surface In Large Limestone Blocks Using A Standard Medical X-Ray Ct Scanner

Text-fig. 3. CT slices on Block 3. Invertebrate moulds (a, c) and remains of their hard skeletons (a, b). Large areas of limestone matrix hold either only a few scattered invertebrates or no fossil at all (b, c). Ring artefacts seen close to the isocentre of the scan (b, c) are a well-known phenomenon caused by the X-ray beams traversing the block at an insufficient radiation dose (as expected in such a large block of dense material), and are not part of any physical structure present therein (Triche et al. 2019).

opencc-by-4.0Dec 2021View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record