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datasets available to search
ShareScore release 0.9.0
Dataset results
9 results for “TFBS”
Prokaryotic TFBS Dataset
<p>A collection of prokaryotic transcription factor binding site motifs gleaned from the CollecTF, MtbRegList, RegTransBase, RegulonDB, DBTBS, and CoryneRegNet databases. Motifs filtered for >= 10 sites, > 5 bits information content.</p>
JASPAR TFBS LOLA databases - Part 2
<p>This repository contains the second part of the JASPAR 2022 LOLA databases used by the <a href="https://bitbucket.org/CBGR/jaspar_enrichment">JASPAR TFBS enrichment tool</a>. We provide the LOLA databases for the human (hg38) JASPAR 2022 TFBS sets as compressed directories containing a set of .RDS R objects.</p> <p>Due to file sizes, we had to split the repository into two different parts. Part 1 of the repository containing the rest of databases can be found <a href="https://doi.org/10.5281/zenodo.6860527">here</a>.</p>
JASPAR TFBS LOLA databases - Part 1
<p>This repository contains the first part of the JASPAR 2022 LOLA databases used by the <a href="https://bitbucket.org/CBGR/jaspar_enrichment">JASPAR TFBS enrichment tool</a>. For each organism, we provide the LOLA databases for all JASPAR 2022 TFBS sets as compressed directories containing a set of .RDS R objects. Databases are organised by genome assembly.</p> <p>Due to file sizes, we had to split the repository into two different parts. Part 2 of the repository containing the databases for human can be found <a href="https://doi.org/10.5281/zenodo.6860555">here</a>.</p>
JASPAR 2024 TFBS LOLA databases - Part 1
<p>This repository contains the first part of the JASPAR 2024 LOLA databases used by the <a href="https://bitbucket.org/CBGR/jaspar_enrichment">JASPAR TFBS enrichment tool</a>. For each organism, we provide the LOLA databases for all JASPAR 2024 TFBS sets as compressed directories containing a set of .RDS R objects. Databases are organised by genome assembly.</p> <p>The repository is split into different parts due to file sizes. Below are listed the different parts and the genome assemblies for which they have TFBSs:</p> <ul> <li><a href="https://doi.org/10.5281/zenodo.8341374">Part 1</a>: araTha1, ce10, ce11, ci3, danRer11, dm6, sacCer3.</li> <li><a href="http://doi.org/10.5281/zenodo.8342340">Part 2</a>: hg38.</li> <li><a href="http://doi.org/10.5281/zenodo.8342388">Part 3</a>: mm39.</li> </ul>
JASPAR 2024 TFBS LOLA databases - Part 3
<p>This repository contains the third part of the JASPAR 2024 LOLA databases used by the <a href="https://bitbucket.org/CBGR/jaspar_enrichment">JASPAR TFBS enrichment tool</a>. For each organism, we provide the LOLA databases for all JASPAR 2024 TFBS sets as compressed directories containing a set of .RDS R objects. Databases are organised by genome assembly.</p> <p>The repository is split into different parts due to file sizes. Below are listed the different parts and the genome assemblies for which they have TFBSs:</p> <ul> <li><a href="https://doi.org/10.5281/zenodo.8341374">Part 1</a>: araTha1, ce10, ce11, ci3, danRer11, dm6, sacCer3.</li> <li><a href="http://doi.org/10.5281/zenodo.8342340">Part 2</a>: hg38.</li> <li><a href="http://doi.org/10.5281/zenodo.8342388">Part 3</a>: mm39.</li> </ul>
JASPAR TFBS tracks
<p>We retrieved the genome browser track file from JASPAR, which stores all known TF binding sites of each TF. A p-value score was provided in JASPAR.</p>
Genome-wide TFBS (Transcription Factor Binding Site) map analysis in HepG2 cells
GEO Series GSE104247. Homo sapiens. 248 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cross-species regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes [mouse TFbs]
GEO Series GSE229100. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
GEO Series GSE33213. Homo sapiens. 79 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.