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31 results for “TMC-1”

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zenodo40/100

Sensitivity Analysis of Gas-Phase Aromatic Chemistry in TMC-1

This repository contains a number of files related to the gas-phase kinetic sensitivity analysis presented and described in Byrne et al. 2024 (in prep). The raw abundances as a function of time for all analyses are contained in 'Sensitivity_raw.hdf5.zip', while the sensitivities are located in 'Sensitivity_data.hdf5.zip'. 'Sens_Walkthrough.ipynb' is a jupyter notebook that explains how to examine this data using functions defined in 'ranking.py' and 'plotting.py'. This notebook also requires the two reactions.in files. Finally, the input files used to generate the data along with the NAUTILUS modeling code can be found in 'Model-Inputs.zip'. These inputs primarily come from the development branch of cixue/BATMAN with minor changes described in a README file.

opencc-by-4.0Aug 2024View details →

zenodo40/100

RIDDLER: An updated astrochemical network for modeling TMC-1

The input files in RIDDLER.zip are those used in Byrne et al. 2023 (in revision) for modeling the propargyl radical and related species in TMC-1. This network is based on the <a href="https://arxiv.org/abs/1503.01594">kida.uva.2014</a> network and intended to be used with the three-phase gas-grain code NAUTILUS. A number of updates have been made by the GOTHAM collaboration (<a href="https://arxiv.org/abs/1801.04228">McGuire et al. 2018</a>, <a href="https://arxiv.org/abs/2008.12345">Xue et al. 2020</a>, <a href="https://arxiv.org/abs/2008.12349">McGuire et al. 2020</a>, <a href="https://arxiv.org/abs/2009.13546">McCarthy et al. 2021</a>, <a href="https://arxiv.org/abs/2103.09984">McGuire et al. 2021</a>, <a href="https://www.nature.com/articles/s41550-020-01261-4">Loomis et al. 2021</a>) as well as the most recent update targeting propargyl radical chemistry. The files in GOTHAM-DR1.zip correspond to the previous GOTHAM astrochemical network, with which comparisons have been made.

opencc-by-4.0Jul 2023View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T16:07:53+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=5HGEPlGgApQ</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T16:07:53+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : clockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food L_2011_02_08__16_07_53___8___11</li> <li>total time (s) : 59.94</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.52754</li> <li>number of segmented skeletons : 1801</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T10:58:35+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=YNbJvjNiPTY</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T10:58:35+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : clockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 ON FOOD l_2011_02_08__10_58_35__1</li> <li>total time (s) : 898.967</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.52923</li> <li>number of segmented skeletons : 26766</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T16:00:47+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=Z3wF4DOEh34</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T16:00:47+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__16_00_47__10</li> <li>total time (s) : 59.94</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.52923</li> <li>number of segmented skeletons : 1787</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T15:23:52+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=od_i2x9Kaxg</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T15:23:52+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 on food R_2011_02_08__15_23_52__9</li> <li>total time (s) : 898.967</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.52923</li> <li>number of segmented skeletons : 26439</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T16:13:12+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=QlPOtRESt1E</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T16:13:12+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__16_13_12__11</li> <li>total time (s) : 59.94</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.52923</li> <li>number of segmented skeletons : 1801</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-01-27T15:56:00+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=KKhS8c50kwU</li> <li>strain : RB1546</li> <li>timestamp : 2011-01-27T15:56:00+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 on food R_2011_01_27__15_56___3___4</li> <li>total time (s) : 898.967</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.72886</li> <li>number of segmented skeletons : 26997</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T12:16:00+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=Z9e6pyPndhY</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T12:16:00+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 on food R_2011_02_08__12_16___3___5</li> <li>total time (s) : 899.0</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.72886</li> <li>number of segmented skeletons : 26636</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T16:04:00+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=WVaMLiZCOns</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T16:04:00+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__16_04___3___11</li> <li>total time (s) : 59.9067</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.72886</li> <li>number of segmented skeletons : 1800</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T15:52:00+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=mdFVZGjvzGI</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T15:52:00+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__15_52___3___10</li> <li>total time (s) : 59.94</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.72886</li> <li>number of segmented skeletons : 1801</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T16:09:21+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=2HTRIjJF8CE</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T16:09:21+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__16_09_21___6___11</li> <li>total time (s) : 59.94</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.52262</li> <li>number of segmented skeletons : 1801</li> </ul>

opencc-by-4.0Oct 2017View details →

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RB1546 tmc-1(ok1859)X | 2010-11-18T12:49:28+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=EHuvlf8kmzg</li> <li>strain : RB1546</li> <li>timestamp : 2010-11-18T12:49:28+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : clockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Robyn Branicky</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 on food L_2010_11_18__12_49_28___2___8</li> <li>total time (s) : 899.0</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.51218</li> <li>number of segmented skeletons : 26969</li> </ul>

opencc-by-4.0Oct 2017View details →

zenodo36/100

RB1546 tmc-1(ok1859)X | 2011-02-08T16:11:23+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=tA5lJnmDJjM</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T16:11:23+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : clockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food L_2011_02_08__16_11_23___7___12</li> <li>total time (s) : 59.94</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.22549</li> <li>number of segmented skeletons : 1801</li> </ul>

opencc-by-4.0Oct 2017View details →

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RB1546 tmc-1(ok1859)X | 2011-02-08T15:48:54+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=yCKnGeW_kcI</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T15:48:54+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__15_48_54___2___10</li> <li>total time (s) : 59.9067</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.49679</li> <li>number of segmented skeletons : 1800</li> </ul>

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RB1546 tmc-1(ok1859)X | 2011-02-08T16:00:36+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=cj_NTtyzGI4</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T16:00:36+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__16_00_36___2___11</li> <li>total time (s) : 59.94</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.49679</li> <li>number of segmented skeletons : 1801</li> </ul>

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RB1546 tmc-1(ok1859)X | 2011-02-08T16:02:00+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=zXneUaa6cJ0</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T16:02:00+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__16_02___3___11</li> <li>total time (s) : 59.8624</li> <li>frames per second : 24.0385</li> <li>video micrometers per pixel : 4.57016</li> <li>number of segmented skeletons : 1401</li> </ul>

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RB1546 tmc-1(ok1859)X | 2011-02-08T11:57:00+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=xvd_BPWql7E</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T11:57:00+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : clockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 on food L_2011_02_08__11_57___3___4</li> <li>total time (s) : 899.3</li> <li>frames per second : 20.0</li> <li>video micrometers per pixel : 4.57016</li> <li>number of segmented skeletons : 17912</li> </ul>

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RB1546 tmc-1(ok1859)X | 2011-02-08T15:50:00+00:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=i5551ZULxtc</li> <li>strain : RB1546</li> <li>timestamp : 2011-02-08T15:50:00+00:00</li> <li>gene : tmc-1</li> <li>chromosome : X</li> <li>allele : ok1859</li> <li>strain_description : tmc-1(ok1859)X</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : no food</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : RB1546 off food R_2011_02_08__15_50___3___10</li> <li>total time (s) : 173.68</li> <li>frames per second : 24.0385</li> <li>video micrometers per pixel : 4.57016</li> <li>number of segmented skeletons : 4164</li> </ul>

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zenodo32/100

Detections of interstellar aromatic nitriles 2-cyanopyrene and 4-cyanopyrene in TMC-1

<div>This is the dataset for the article:</div> <div>Detections of interstellar aromatic nitriles 2-cyanopyrene and 4-cyanopyrene in TMC-1</div> <div> </div> <div>Authors:</div> <div>GOTHAM collaboration</div> <div> </div> <div>DOI:</div> <div>10.1038/s41550-024-02410-9</div> <div> </div> <div>Journal:</div> <div>Nature Astronomy</div> <div> </div> <div>Corresponding authors:</div> <div>Gabi Wenzel, Ilsa R. Cooke, Brett A. McGuire</div> <div> </div> <div>#--------------------------------------------------------------------------------------</div> <div> </div> <div>Folders:</div> <div>    - DATA_2-cyanopyrene_spectroscopy contains all SPCAT/SPFIT files for 2-cyanopyrene (Fig. A2)</div> <div>including the partition function as a .qpart file</div> <div>    - DATA_4-cyanopyrene_spectroscopy contains all SPCAT/SPFIT files for 4-cyanopyrene (Fig. A3)</div> <div>including the partition function as a .qpart file</div> <div>    - DATA_FigA2 contains the unsmoothed GOTHAM data as presented in Fig. A2</div> <div>    - DATA_FigA3 contains the unsmoothed GOTHAM data as presented in Fig. A3</div> <div>    - DATA_SNRLinesinStack_2-cyanopyrene contains the unsmoothed GOTHAM data centered around each</div> <div>of the 150 brightest SNR lines that are contained in the 2-cyanopyrene stack (Fig. 2)</div> <div>    - DATA_SNRLinesinStack_4-cyanopyrene contains the unsmoothed GOTHAM data centered around each</div> <div>of the 150 brightest SNR lines that are contained in the 4-cyanopyrene stack (Fig. 2)</div> <div>    - SupplementaryData1_CyanopyreneStructures.csv contains the structures for the (transition)</div> <div>states reported in the potential energy surface </div> <div> </div> <div>#--------------------------------------------------------------------------------------</div> <div> </div>

opencc-by-4.0Oct 2024View details →

ScienceDex guides

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas

neuroscienceopenDocumentation, web resources, and API references are available online.

Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage

behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.

Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb

electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.

Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl

behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.

Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro

neuroscienceopenPublished datasets are available on demand over the internet.

Last verified 2026-04-29Open record