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Dataset results
11 results for “TPR”
Interpretation of H2‑TPR from Cu-CHA Using First-Principles Calculations
<p>Dataset related to the article with the same title and authors:</p> <p><a href="https://doi.org/10.1021/acs.jpcc.3c07998">Interpretation of H2‑TPR from Cu-CHA Using First-Principles Calculations</a></p> <p> </p> <p>The zip file contains selected structures and a README.txt file with additional information.</p>
RNA-seq of IMR90 cells during OIS under TPR depletion
GEO Series GSE264387. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
O-GlcNAc transferase recognizes protein substrates using an asparagine ladder in the TPR superhelix
GEO Series GSE107911. Homo sapiens. 33 samples. Type: Protein profiling by protein array.
TPR Knockdown Frac-Seq
GEO Series GSE135537. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing.
Nascent RNA-seq of human AID-NeonGreen-Tpr tagged DLD-1 cells after loss of Tpr nucleoporin
GEO Series GSE149890. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
ZC3HC1 has functions distinct from TPR and is dispensable for TPR localization to the nuclear basket
GEO Series GSE286436. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Molecular Dynamics trajectories and portable binary run input (TPR) files for the dual role of anionic lipids in amyloid aggregation
<h1>About this repository</h1> <p>We conducted Coarse-Grained molecular dynamics simulations to study the aggregation of the amyloid-beta fragment, Aβ16-22 (K16LVFFAE22), on mixed lipid bilayers composed of POPC and POPS. Three bilayer compositions were examined: 0% PS-100% PC, 10% PS-90% PC and 30% PS-70% PC. Simulations were performed using GROMACS 2019.4, employing the WEPROM forcefield for peptide modeling and WEPMEM for lipid modeling. For each POPS percentage, four independent replicas were run for 3000 ns. </p> <h1><strong>Contents</strong></h1> <h3>> Abeta_PCPS.zip </h3> <p>This zip file contains three main folders: 0PS, 10PS, and 30PS. These represent different percentages of PS present in the lipid bilayer.</p> <p>Each folder contains:</p> <p>1. Initial structures:<br> - em1.gro: Lipid bilayer without peptides<br> - eq1.gro: Lipid bilayer at 95 Ų area-per-lipid (APL)<br> - em2.gro: Lipid bilayer at 95 Ų APL with 16 peptides<br> - eq2.gro: Final equilibrated structure with peptides (used for production)</p> <p>2. Supporting files:<br> - index.ndx: Index groups for peptides and lipid bilayer<br> - run.pdf: Structure file for VMD visualization</p> <p>3. Four replica folders (replica1 to replica4), each containing:<br> - red.tpr: Binary input for analysis (peptides and lipid bilayer only)<br> - full_trj_pbc.xtc: Trajectory file (peptides and lipid bilayer only, centered in box)</p> <p>Note: The `.tpr` files were created using the `gmx convert-tpr` tool.</p> <p><strong>To access the source files with which these simulations were set-up, and a brief tutorial, see: </strong><a href="https://github.com/suhasgotla/heparin_amyloid_self-assembly">https://github.com/meenaljainumd/PCPS_amyloid_aggregation</a></p>
Effects of TPR and Z Techniques on Pain and Drug Leakage in Intramuscular Injections
ClinicalTrials.gov study NCT07004166. IPD Sharing: NO. Countries: 1. Publications: 0.
Total RNA-seq of siRNA-mediated WTAP and TPR knockdown
GEO Series GSE130873. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profile of Baf3 cells overexpressing TPR-FGFR1 fusion gene
GEO Series GSE272597. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
ATAC-seq of IMR90 cells during OIS under TPR depletion
GEO Series GSE264390. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.