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15 results for “Triticum durum”
ECOBREED WP2 T2.1 Winter durum wheat (Triticum durum) nursery
<p>Description of the winter durum wheat (Triticum durum) nursery. Tested within T2.1 in Austria (by BOKU), Hungary (by MTA-ATK) and Italy (by UNITUS). Results included from the season 2018/19.</p>
Genome assembly of Triticum turgidum subsp. durum cv. Langdon
<p><strong>Summary of the datasets</strong></p> <p>Durum wheat (<em>Triticum turgidum</em> L. subsp. <em>durum</em> (Desf.) Husnot) cultivar Langdon is an experimental standard strain that has been used as a parental strain to produce chromosome substitution lines and synthetic hexaploid wheat. We maintain 'Langdon' pure line (strain No.: LPGKU2272) under National BioResource Project Wheat (NBRP-Wheat) by self-pollination.</p> <p>We constructed a genome assembly of Langdon from about 252 Gbp of HiFi reads using Hifiasm v0.19.8-r603 with additional options '-l 0 -f 39'. The assembly consists of 4,391 contigs (total size: 10,497,834,563 bp, N50: 27,495,971 bp).</p> <p>Assembly: Triticum_durum.Langdon.hifiasm_assembly.v0.1.fa.gz</p> <p>We further performed reference-guided scaffolding to assign the contigs into 14 chromosomes of tetraploid wheat using RagTag v2.1.0 software with aligner option 'unimap'. In this scaffolding process, the public sequence of durum wheat cv. Svevo (Svevo.v1; Maccaferri et al., Nat. Genet., 2019) is used as reference genome.</p> <p>Scaffolded sequence: Triticum_durum.Langdon.ragtag_scaffold.v0.1.fa.gz</p> <p><strong>Acknowledgement</strong></p> <p>This work has been conducted under National BioResource Project (NBRP), Ministry of Education, Culture, Sports, Science and Technology, Japan.</p>
FIGURE 1 in On the nomenclatural type of Triticum durum (Poaceae: Triticeae)
FIGURE 1. Lectotype of Triticum durum Desf., Herb. P (2-D code P00662178). Image courtesy of the herbarium P, reproduced with permission.
Fig. 6 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 6. Predicted cis-acting elements in the TdGASA genes promoter regions. The 2-kb sequences upstream of the 19 TdGASA genes were analyzed with the PlantCARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html) and New PLACE (https://www.dna.affrc.go.jp/PLACE/?action=new place) databases. The cis-acting elements were classified into three major classes: hormone-related cis-elements, development-related cis-elements, and stress-related cis-elements.
Fig. 8 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 8. Expression of TdGASA1, TdGASA4, TdGASA14, and TdGASA19 genes confers stress tolerance to yeast cells. Wild-type transformed with empty vector (EV) or with four TdGASA genes were grown for 4 days under normal growth conditions (30 ◦ C) or under heat (37 ◦ C or 42 ◦ C), ionic (LiCl 100 mM), salt stress (NaCl 2 M), osmotic stress (Mannitol 2 M), and oxidative stress (H2O2 10 mM) in rich solid media a containing galactose as carbon source. The growth assays depicted are reflective of three independent replicates (A). (B) Cell growth (OD600) of wild-type transformed with empty vector (EV) or with four TdGASA genes under different stress conditions. Error bars represent calculated standard error of the mean (SEM) of three independent replicates. Different letters on bars represent the significant values according to Duncan's test (p <0.05).
Fig. 7 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 7. Expression pattern of durum wheat GASA genes. (A) Heatmap of the expression pattern of TdGASA genes in roots, stems, leaves, and seeds. (B) Heatmap showing the expression pattern of TdGASA genes T. durum plants subjected to 150 mM NaCl, 15% PEG-6000, 50 μM GA3 and 50 μM ABA. The data represent means of three independent experiments. Color code is presented above the heatmap. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 1. Locations of the 19 TdGASA genes on durum wheat chromosomes. The scale on the left represented the length of the chromosomes. Mb = million base pair. The pairs of duplicated genes are underlined with same color. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 5 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 5. Analysis of 19 TdGASA genes structures. (A) An unrooted phylogenetic tree constructed based on TdGASA genes sequences. (B) Exon-intron structure analysis, blue boxes represent untranslated regions, yellow boxes and black lines were exon and intron positions, respectively. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 2. Predicted three-dimensional structures of TdGASA proteins. Models were generated by using Phyr2 server. The secondary structure elements: α-helices (blue), β-sheets (yellow), and coils (cyan) are indicated for the predicted 3D structures of TdGASA proteins. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 4 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 4. Analysis of Triticum durum TdGASA proteins structures. (A) An unrooted phylogenetic tree generated using TdGASA protein sequences. (B) Motif identification using MEME. (C) TdGASA protein structure (D) Multiple sequence alignments of GASA domain. (E) Logo of the TdGASA conserved-domain.
Fig. 3 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 3. Phylogenetic tree analysis of B. distachyon, O. sativa, S. bicolor, A. thaliana, T. aestivum, T. turgidum, and H. vulgare GASA proteins. Maximum likelihood method with 1000 bootstrap replicates was used to compute the distances of GASA proteins by using the MEGA11 software. The four subgroups of GASAs are presented with different colors. Black triangles denote B distachyon (Bd) proteins, yellow triangles denote the O. sativa (Os) proteins, blue triangles denote the S. bicolor (Sb), red triangles are for A. thaliana (At) proteins, black circles refer to T. turgidum (TdGASA) proteins, blue diamond's indicate T. aestivum (Ta) proteins, and yellow diamonds are for H. vulgare (Hv) proteins. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Triticum durum Desf. (BR0000011620952)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum durum Desf. (BR0000011620686)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum durum Desf. (BR0000011619994)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum durum Desf. (BR0000011620297)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
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