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38 results for “Triticum turgidum”
Triticum turgidum L. (BR0000024508865)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620990)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620631)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620662)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620303)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620693)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011619949)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620907)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620099)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620273)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011621027)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Triticum turgidum L. (BR0000011620600)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Genome assembly of Triticum turgidum subsp. durum cv. Langdon
<p><strong>Summary of the datasets</strong></p> <p>Durum wheat (<em>Triticum turgidum</em> L. subsp. <em>durum</em> (Desf.) Husnot) cultivar Langdon is an experimental standard strain that has been used as a parental strain to produce chromosome substitution lines and synthetic hexaploid wheat. We maintain 'Langdon' pure line (strain No.: LPGKU2272) under National BioResource Project Wheat (NBRP-Wheat) by self-pollination.</p> <p>We constructed a genome assembly of Langdon from about 252 Gbp of HiFi reads using Hifiasm v0.19.8-r603 with additional options '-l 0 -f 39'. The assembly consists of 4,391 contigs (total size: 10,497,834,563 bp, N50: 27,495,971 bp).</p> <p>Assembly: Triticum_durum.Langdon.hifiasm_assembly.v0.1.fa.gz</p> <p>We further performed reference-guided scaffolding to assign the contigs into 14 chromosomes of tetraploid wheat using RagTag v2.1.0 software with aligner option 'unimap'. In this scaffolding process, the public sequence of durum wheat cv. Svevo (Svevo.v1; Maccaferri et al., Nat. Genet., 2019) is used as reference genome.</p> <p>Scaffolded sequence: Triticum_durum.Langdon.ragtag_scaffold.v0.1.fa.gz</p> <p><strong>Acknowledgement</strong></p> <p>This work has been conducted under National BioResource Project (NBRP), Ministry of Education, Culture, Sports, Science and Technology, Japan.</p>
Chromosome-level genome assembly of Triticum turgidum var 'Kronos'
<p> </p> <h2><strong>This data is made available under the Toronto Agreement. </strong></h2> <p><strong>All of the data listed here is available under the prepublication data sharing principle of the </strong><a href="https://www.nature.com/articles/461168a"><strong>Toronto agreement</strong></a><strong> (1). By using this data, you agree to:</strong></p> <ul> <li><strong>respect the rights of the data producers and contributors to analyze and publish the first global analyses and certain other reserved analyses of this data set in a peer-reviewed publication.</strong></li> <li><strong>not redistribute, release, or otherwise provide access to the data to anyone outside of the group, until the data has been published & submitted to the public data repositories.</strong></li> <li><strong>contact the authors to discuss any plans to publish data or analyses that utilize this data to avoid the overlap of any planned analyses.</strong></li> <li><strong>fully cite the prepublication data along with any applicable versioning details.</strong></li> <li><strong>understand that this data as accessed is precompetitive and is not patentable in its present state.</strong></li> </ul> <p><strong>This agreement does not expire by time but only upon publication of the first global analysis by the data producers and contributors.</strong><br><strong>(1) Toronto International Data Release Workshop Authors. Prepublication data sharing. </strong><em><strong>Nature</strong></em><strong> 461, 168–170 (2009). </strong><a href="https://doi.org/10.1038/461168a"><strong>https://doi.org/10.1038/461168a</strong></a></p> <p> </p> <ul> <li><em>If you have questions about <strong>the use</strong> of this dataset, please contact Ksenia Krasileva: kseniak [at] berkeley.edu</em></li> </ul> <p> </p> <p><strong>Updates in Zenodo v7</strong></p> <p>This update includes annotations of non-coding RNAs. Please refer to our <a href="https://github.com/s-kyungyong/Kronos">github</a> to understand how this datasets were produced. Please check additional datasets here: <a href="https://zenodo.org/records/15801566">Chromosome-level genome assembly of Triticum turgidum var 'Kronos' additional datasets.</a></p> <p> </p> <p><strong>Acknowledgement</strong></p> <p>This work has been funded by the United States Department of Agriculture - National Institute for Food and Agriculture Award (2021-67013-35726). <br><br><br></p>
Fig. 6 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 6. Predicted cis-acting elements in the TdGASA genes promoter regions. The 2-kb sequences upstream of the 19 TdGASA genes were analyzed with the PlantCARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html) and New PLACE (https://www.dna.affrc.go.jp/PLACE/?action=new place) databases. The cis-acting elements were classified into three major classes: hormone-related cis-elements, development-related cis-elements, and stress-related cis-elements.
Fig. 8 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 8. Expression of TdGASA1, TdGASA4, TdGASA14, and TdGASA19 genes confers stress tolerance to yeast cells. Wild-type transformed with empty vector (EV) or with four TdGASA genes were grown for 4 days under normal growth conditions (30 ◦ C) or under heat (37 ◦ C or 42 ◦ C), ionic (LiCl 100 mM), salt stress (NaCl 2 M), osmotic stress (Mannitol 2 M), and oxidative stress (H2O2 10 mM) in rich solid media a containing galactose as carbon source. The growth assays depicted are reflective of three independent replicates (A). (B) Cell growth (OD600) of wild-type transformed with empty vector (EV) or with four TdGASA genes under different stress conditions. Error bars represent calculated standard error of the mean (SEM) of three independent replicates. Different letters on bars represent the significant values according to Duncan's test (p <0.05).
Fig. 7 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 7. Expression pattern of durum wheat GASA genes. (A) Heatmap of the expression pattern of TdGASA genes in roots, stems, leaves, and seeds. (B) Heatmap showing the expression pattern of TdGASA genes T. durum plants subjected to 150 mM NaCl, 15% PEG-6000, 50 μM GA3 and 50 μM ABA. The data represent means of three independent experiments. Color code is presented above the heatmap. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 1. Locations of the 19 TdGASA genes on durum wheat chromosomes. The scale on the left represented the length of the chromosomes. Mb = million base pair. The pairs of duplicated genes are underlined with same color. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 5 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 5. Analysis of 19 TdGASA genes structures. (A) An unrooted phylogenetic tree constructed based on TdGASA genes sequences. (B) Exon-intron structure analysis, blue boxes represent untranslated regions, yellow boxes and black lines were exon and intron positions, respectively. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in Genome-wide characterization and expression profiling of GASA gene family in Triticum turgidum ssp. durum (desf.) husn. (Durum wheat) unveils its involvement in environmental stress responses
Fig. 2. Predicted three-dimensional structures of TdGASA proteins. Models were generated by using Phyr2 server. The secondary structure elements: α-helices (blue), β-sheets (yellow), and coils (cyan) are indicated for the predicted 3D structures of TdGASA proteins. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
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