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24
datasets available to search
ShareScore release 0.9.0
Dataset results
24 results for “Tumor microbiome”
MinION sequence data: MinION sequencing of colorectal cancer tumor microbiomes – a comparison with amplicon-based and RNA-Sequencing
<p>MinION sequencing data that was unmapped by minimap2 for the 11 samples using in the "MinION sequencing of colorectal cancer tumor microbiomes – a comparison with amplicon-based and RNA-Sequencing" paper.</p>
Predicting cancer prognosis and drug response from the tumor microbiome
<p>Tumor gene expression is predictive of patient prognosis in some cancers. However, RNA-seq and whole genome sequencing data contain not only reads from host tumor and normal tissue, but also reads from the tumor microbiome, which can be used to infer the microbial abundances in each tumor. Here, we show that tumor microbial abundances, alone or in combination with tumor gene expression data, can predict cancer prognosis and drug response to some extent – microbial abundances are significantly less predictive of prognosis than gene expression, although remarkably, similarly as predictive of drug response, but in mostly different cancer-drug combinations. Thus, it appears possible to leverage existing sequencing technology, or develop new protocols, to obtain more non-redundant information about prognosis and drug response from RNA-seq and whole genome sequencing experiments than could be obtained from tumor gene expression or genomic data alone.</p>
Mouse RNASeq data for "The tumor microbiome reacts to hypoxia and can influence response to radiation treatment in colorectal cancer", part 1
Open the record for dataset details and reuse information.
Mouse RNASeq data for "The tumor microbiome reacts to hypoxia and can influence response to radiation treatment in colorectal cancer", part 2
Open the record for dataset details and reuse information.
Environmental Enrichment Induces Pericyte and IgA-Dependent Wound Repair and Lifespan Extension in a Colon Tumor Model [Microbiome]
GEO Series GSE90801. mouse gut metagenome. 41 samples. Type: Other.
Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of pancreatic cancer
GEO Series GSE172356. Homo sapiens. 62 samples. Type: Expression profiling by high throughput sequencing.
Profiling the Intratumoral Microbiome of Pancreatic Ductal Adenocarcinoma Based on EUS-FNB Tissue Samples and Exploring Its Impact on Tumor Diagnosis and Prognosis.
ClinicalTrials.gov study NCT06655233. IPD Sharing: NO. Countries: 1. Publications: 0.
Role of the Gut Microbiome in Anti-tumor Therapy Induced Diarrhea
ClinicalTrials.gov study NCT05873231. IPD Sharing: YES. Countries: 1. Publications: 0.
Gut and Tumor Microbiome in Patients With Early Stage (II-III), Locally Advanced or Advanced ER-positive and HER2-negative Breast Cancer.
ClinicalTrials.gov study NCT06126003. IPD Sharing: NO. Countries: 1. Publications: 0.
Tumor Immunotherapy and Microbiome Analysis
ClinicalTrials.gov study NCT04579978. IPD Sharing: NO. Countries: 1. Publications: 0.
Study of Gut Microbiome and Colorectal Tumors
ClinicalTrials.gov study NCT03297996. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Study of the Correlation of Tumor Tissue Microbiome to the Pathogenesis of Lung Cancer
ClinicalTrials.gov study NCT04260295. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Microbiome, Immune-system and Tumor Interaction in Colorectal Cancer
ClinicalTrials.gov study NCT06331988. IPD Sharing: NO. Countries: 1. Publications: 0.
The Gut Microbiome and Immune Checkpoint Inhibitor Therapy in Solid Tumors
ClinicalTrials.gov study NCT05037825. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Dissecting the Role of MIcrobioMe in gastroEsophageal Tumor: a multIdisCiplinary Longitudinal Study
ClinicalTrials.gov study NCT06405035. IPD Sharing: NO. Countries: 1. Publications: 0.
Virtual Home-based Exercise Intervention (RISE) to Improve Cancer-Related Cognitive Impairment and Gut Microbiome in Adolescent and Young Adult Brain Tumor Survivors
ClinicalTrials.gov study NCT06799481. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Microbiome-specific T follicular helper cells drive tertiary lympohid structures and anti-tumor immunity against colorectal cancer
GEO Series GSE178485. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Inflammation mediated by gut microbiome alterations promotes lung cancer development and an immunosuppressed tumor microenvironment
GEO Series GSE271872. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Mice melanoma treated by anti-PD1 and intra-tumor microbiome
GEO Series GSE205896. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Microbiome-dependent tryptophan metabolism suppresses inflammatory immunity in the pancreatic tumor microenvironment by activation of the aryl hydrocarbon receptor [scRNA-seq]
GEO Series GSE171602. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.