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11
datasets available to search
ShareScore release 0.9.0
Dataset results
11 results for “WhatsGNU”
Compressed Database of Klebsiella pneumoniae for WhatsGNU
<p>WhatsGNU_Kp_Ortholog.zip: <em>Klebsiella pneumoniae</em> Version-04/28/2020 (compressed 46,072,343 proteins in 8752 genomes to 1,466,934 protein variants). Updated File to fix issue with download.</p>
E.coli - WhatsGNU hashed basic database
<p>WhatsGNU hashed basic database for <em>Escherichia coli.</em></p>
C.difficile - WhatsGNU ortholog database
<p>WhatsGNU ortholog database for <em>Clostridioides difficile.</em></p>
Pseudomonoas aeruginosa - WhatsGNU basic database
<p>WhatsGNU unhashed basic database for <em>Pseudomonas aeruginosa.</em></p>
Pseudomonas aeruginosa - hashed WhatsGNU basic database
<p>WhatsGNU hashed basic database for <em>Pseudomonoas aeruginosa. </em></p>
Klebsiella pneumoniae - hashed WhatsGNU basic database
<p>Hashed WhatsGNU basic database with CSV for <em>Klebsiella pneumoniae.</em></p>
S.aureus - WhatsGNU ortholog database
<p>WhatsGNU ortholog database for <em>Staphylococcus aureus</em>.</p>
Klebsiella pneumoniae - WhatsGNU basic database
<p>Unhashed WhatsGNU basic database for <em>Klebsiella pneumoniae</em>. </p>
RefSeq - WhatsGNU hashed basic database
<p>WhatsGNU hashed basic database for all species in RefSeq</p>
E.coli - WhatsGNU basic database
<p>WhatsGNU basic database for Escherichia coli.</p>
Supplemental Datasets for: WhatsGNU: A Tool For Identifying Proteomic Novelty.
<p>Five precompressed databases are available for WhatsGNU:</p> <p>Ortholog Mode:</p> <ol> <li>WhatsGNU_TB_Ortholog.zip: <em>Mycobacterium tuberculosis</em> Version-07/09/2019 (compressed 26,794,006 proteins in 6563 genomes to 434,725 protein variants).</li> <li>WhatsGNU_Pa_Ortholog.zip: <em>Pseudomonas aeruginosa</em> Version-07/06/2019 (compressed 14,475,742 proteins in 4712 genomes to 1,288,892 protein variants).</li> <li>WhatsGNU_Sau_Ortholog.zip: <em>Staphylococcus aureus</em> Version-06/14/2019 (compressed 27,213,667 proteins in 10350 genomes to 571,848 protein variants).</li> </ol> <p>Big Data basic Mode:</p> <ol> <li><em>Senterica_Enterobase_basic_216642.pickle.gz: Salmonella enterica</em> Enterobase Version-08/29/2019 (compressed 975,262,506 proteins in 216,642 genomes to 5,056,335 protein variants).</li> <li><em>Sau_Staphopia_basic_43914.pickle: Staphylococcus aureus</em> Staphopia Version-06/27/2019 (compressed 115,178,200 proteins in 43,914 genomes to 2,228,761 protein variants).</li> </ol> <p>Figures_datasets.zip: The FASTA files and the WhatsGNU reports as input and output, respectively, which were used to produce panels in Figures 1 and 2 and supplementary figures 1, 2 and 3.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.