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ShareScore release 0.9.0
Dataset results
8 results for “WikiPathways”
WikiPathways Nanomaterials Portal
<p>Archive of the WikiPathways Nanomaterials Portal on 8 November 2022. Includes PNG images and original GPML files.</p>
CyTargetLinker WikiPathways Linksets
<p>WikiPathways Linksets for CyTargetLinker (2021-01-10 release). </p> <ul> <li>WikiPathways curated collection</li> <li>WikiPathways Reactome collection</li> </ul>
WikiPathways Sept 2021 Release - RDF data
<p>Archive of the WikiPathways September 2021 RDF data for <em>Homo sapiens</em> as GPMLRDF and WPRDF (.ttl format). The data is licenced under the <a href="https://creativecommons.org/share-your-work/public-domain/cc0/">CCZero waiver</a>.</p>
WikiPathways April 2023 Release - RDF data
<p>Archive of the WikiPathways April 2022 RDF data for all species as GPMLRDF and WPRDF (.ttl format). The data is licensed under the <a href="https://creativecommons.org/share-your-work/public-domain/cc0/">CCZero waiver</a>.</p>
WikiPathways Nov 2020 Release - RDF data (ALL)
<p>Archive of the WikiPathways November 2020 RDF data for all species and all pathways as WPRDF (.ttl format, first unzip before using!). The data is licensed under the <a href="https://creativecommons.org/share-your-work/public-domain/cc0/">CCZero waiver</a>. This file contains data of the following pathway databases: Reactome, LIPID MAPS, WikiPathways.</p>
WikiPathways June 2019 Release - GPML and RDF files
<p>Archive of the WikiPathways June 2019 GPML files for <em>Homo sapiens</em> and the GPMLRDF and WPRDF translations. The data is available as CCZero.</p>
WikiPathways WPRDF BridgeDb ID mapping triples
<p>Created from the Nightly WPRDF data from 2023-03-31 by loading the RDF into a local Blazegraph instance and running the below query and exporting this as `.ttl` file:</p> <p>```sparql</p> <p>PREFIX bdb: <http://vocabularies.wikipathways.org/wp#bdb></p> <p>CONSTRUCT { ?s ?p ?o } WHERE {<br> VALUES ?p {<br> bdb:Wikidata bdb:Ensembl bdb:Uniprot bdb:EntrezGene<br> bdb:ChEBI bdb:Chemspider bdb:ComplexPortal bdb:HgncSymbol<br> bdb:Hmdb bdb:InChIKey bdb:KeggCompound bdb:LipidMaps<br> bdb:PubChem bdb:Rhea bdb:Uniprot bdb:Reactome<br> }<br> ?s ?p ?o .<br> }</p> <p>```</p>
WikiPathways March 2020 Release - GPML and RDF files
<p>Archive of the WikiPathways March 2020 GPML files for <em>Homo sapiens</em> and the GPMLRDF and WPRDF translations. The data is available as CCZero.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.