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66 results for “ZooMS”
Global Human Settlement Layer per zoom-level 18 Quadtree tile for selected countries as Spatialite database with OpenStreetMap building completeness assessment
<p>This Spatialite database contains the built-up area of the Global Human Settlement Layer (GHSL) per zoom-level 18 Quadtree tile. Additionally, it provides a comparison of the GHSL with buildings in OpenStreetMap: For each tile the built-up ratio between the building footprints and the GHSL is given and a binary completeness assessment (buildings complete, not complete) is provided for easy use. This dataset was created using the obmgapanalysis tool: https://git.gfz-potsdam.de/dynamicexposure/openbuildingmap/obmgapanalysis</p>
MALDI-TOF-MS reference spectra and sequence data for domesticated equids (horse and donkey) collagen for Zooarchaeology by Mass Spectrometry (ZooMS)
<p>MALDI-TOF-MS spectra of extracted collagen from modern reference and archaeological bone samples to develop markers for Zooarchaeology by Mass Spectrometry (ZooMS) to distinguish between Equus species. For each sample digestions were done in both trypsin and chymotrypsin separately. Information about the species of the samples can be found in 'sample metadata.csv' file. Information on the extraction and digestion protocol can be found in the associated manuscript. The sequence data contains alignments of the proteins COL1A1 and COL1A2 for available Equus collagen protein sequences. More information on these files can be found in the corresponding manuscript to this dataset.<br> </p>
Nanolaminography dataset: Three-dimensional imaging of integrated circuits with a macro to nanoscale zoom
<p>Here we present a ptychographic X-ray laminography (PyXL) dataset. It is a new approach for nano-imaging that combines a coherent diffractive imaging technique called ptychography with laminography, which is a generalization of tomography. This allows achieving sub-20 nm resolution over large sample volumes. </p> <p>Non-destructive three-dimensional imaging over large volumes with nano-scale resolution is a challenge faced in many fields, perhaps most acutely in mapping the natural neural connectome and artificial silicon-based integrated circuits. For the latter, such inspection is of interest for quality control and security acquiring particular importance due to the delocalized nature of the chain connecting chip design, manufacture and use. A hierarchy of probes are used to image at length scales from that of the entire chip (millimeters) to those of individual features (nanometers) of the underlying transistors, starting with optical microscopy and finishing with transmission electron microscopy on thin slices prepared using a focused ion beam. What has been missing until now is a single technique yielding a three-dimensional image of the entire chip volume with zooming capability to produce high-resolution images of arbitrarily chosen sub-regions, including virtual delayering.</p> <p>The related publication can be accessed via ShareIt <a href="https://mail.ethz.ch/owa/redir.aspx?C=NzB9-v6wS5uDOPXWL0cW_Vu4ys_MIpbvUqKcmezLt5AHOlhZD1DXCA..&URL=https%3a%2f%2frdcu.be%2fbTudW">https://rdcu.be/bTudW</a></p>
MALDI-TOF-MS spectra of archaeological bone fragments from Bandicoot Bay, Barrow Island (Australia) for ZooMS (Zooarchaeology by Mass Spectrometry)
<p>MALDI-TOF-MS spectra for archaeological bone fragments from Bandicoot Bay, Barrow Island, Western Australia. All spectra are uploaded in .mzml format. </p>
Tryps-IN: A streamlined palaeoproteomics workflow enables ZooMS analysis of 10,000-year-old petrous bones from Jordan rift-valley
<p>Poor preservation of collagen in dry and/or arid environments has hindered the application of Zooarchaeology by mass spectrometry (ZooMS) analysis in many regions of the world, and as a result many zooarchaeological investigations have relied exclusively on the morphological assessment of fragmentary remains, due to the inadequate preservation of biomolecules. The climatic conditions of Southwest Asia include extreme temperature fluctuations unconducive to preservation of proteins and DNA. We performed zooarchaeological analysis of remains from the 10,000-year-old site of Shkārat Msaied in Jordan and sub-sampled twenty-eight petrous bones, the hardest bone in the mammalian skeleton, for species identification by ZooMS. Using an unconventional and simplified extraction protocol we call Tryps-IN, in which digestion was performed without removal of the demineralising EDTA, we taxonomically identified several fragments, outperforming the established ZooMS work-flow. A subset of identifications was subsequently confirmed using liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) protein sequencing. The new methodology presented here opens the possibility of further bioarchaeological investigation of other fragmentary faunal assemblages within this region of archaeological significance. </p>
Combining traceological analysis and ZooMS on Early Neolithic bone artefacts from the Cave of Coro Trasito, NE Iberian Peninsula: Cervidae used equally to Caprinae
<p>MALDI-ToF MS and MALDI-tims-Q-ToF MS data (raw data: .txt files, merged spectra: msd files) used for the ZooMS analysis of 20 bone artefacts from the Early Neolithic site of Coro Trasito.</p>
Evaluation Results - Semantic Zoom With Immersive Detail View for ExplorViz
<p>This archive contains the evaluation results of the master thesis 'Semantic Zoom With Immersive Detail View for ExplorViz'.</p> <p>The evaluation is divided into a user evaluation of usability and user performance and a rendering performance evaluation.</p> <p>The evaluation compares the version of ExplorViz with Semantic Zoom and without Semantic Zoom.</p> <p>The complete user survey can be viewed in the PDF: 'Printed version of the survey - ExplorViz with Semantic Zoom.pdf'.</p> <p><br>- The file 'survey_archive_277626.lsa' is exported from LimeSurvey and contains the survey and the responses.<br>- results-survey277626.csv' contains the results in csv format.<br>- The file 'results-statistics.pdf' is a pdf that contains statistics about the survey results.<br>- The file 'results-all-answers-ExplorViz with Semantic Zoom.pdf' lists all the participants' answers in text format.<br>- The file 'allChartImages.zip' displays the results data in graphs.</p> <p><br>As part of a performance evaluation of the frontend, a Python script using Selenium was used.<br>The results can be found in the csv files:<br>- 'performance_RendertimeTracegen - XXXL world with high communication2024-11-19--22-13-36-SZLongTerm'<br>- 'performance_RendertimeTracegen - XXXL world with high communication2024-11-19--22-09-24-NoSZLongTerm'</p> <p>The Python script is split into two files:<br>- 'selenium_test.py'<br>- 'helpers.py'</p>
Data for ZooMS analysis of avian fauna from Teotihuacan, Mexico, for Codlin et al. 2022
<p>This data is associated with a manuscript on the analysis of avian fauna via Zooarchaeology by Mass Spectrometry (ZooMS) by Codlin et al. (2022)<br> See publication for more details <a href="https://doi.org/10.1016/j.jas.2022.105692">https://doi.org/10.1016/j.jas.2022.105692</a>. Additional data will be made available on ProteomeXchange</p> <p>All samples were processed with HCl, gelatinized at 65ºC in AmBic and digested with trypsin.<br> While some samples underwent purification using a C18 ZipTip, all digested peptide solutions were diluted to various concentrations prior to spotting and analysis on a Bruker Autoflex Speed LRF MALDI-TOF Mass Spectrometer.</p> <p># Details of files uploaded</p> <p>## "Sample_details.csv"<br> Lists sample IDs and taxonomic information for modern reference specimens and archaeological specimens selected for LC-MS/MS analysis</p> <p>## "MALDI_arch_samples.zip"<br> Contains the unprocessed .MZML MALDI spectra for archaeological specimens.</p> <p> File names are composed of:<br> - MCsample#_MALDIplate#_dilutionAND/ORziptip_platelocation</p> <p>## "MALDI_modern_samples.zip"<br> Contains the unprocessed .MZML MALDI spectra for modern reference specimens.<br> All samples except MC2 are from AMNH collections. See "Sample_details.csv" for sample information</p> <p> File names are composed of:<br> - MCsample#_dilution_speciesidentification_MALDIplatelocation</p> <p>## "Curated_avian_collagen_fasta.zip"<br> Contains two .fasta files with curated avian COL1a1 and COL1a2 sequences from publicly available data.</p> <p>##"MS2_images.zip"<br> Contains MS2 images from LC-MS/MS confirmation of biomarker peaks. See "Sample_details.csv" for sample information.</p> <p> File names are composed of:<br> - COL1A2chain_markerlocation_masspeak_sample#</p> <p>##"MALDI_spectra_images.zip"<br> Contains images of representative spectra for modern and archaeological taxa identified in the study. These spectra were processed and averaged in mMass using the "MALDI-TOF Peptides" settings.<br> Spectra were aligned to more closely fit confirmed biomarker peaks for each sample. See "Sample_details.csv" for sample information.</p> <p> File names are composed of:<br> - Sample#</p> <p>## "biomarkers_list.txt"<br> Contains the list of peaks and deamidated peaks used in clustering MALDI spectra.</p>
Dataset: Zoom Video Communications, Inc. (ZM) Stock Performance
This dataset provides historical stock market performance data for specific companies. It enables users to analyze and understand the past trends and fluctuations in stock prices over time. This information can be utilized for various purposes such as investment analysis, financial research, and market trend forecasting.
Supplementary Material for "Can ZooMS help assess species abundance in highly fragmented bone assemblages? Integrating morphological and proteomic identifications for the calculation of an adjusted ZooMS-eNISP"
<p><span>Supplementary Material for the article "Can ZooMS help assess species abundance in highly fragmented bone assemblages? Integrating morphological and proteomic identifications for the calculation of an adjusted ZooMS-eNISP" by Discamps et al., published in Palaeoanthropology.</span></p> <p><span>SI#1 Cassenade dataset (morphological and ZooMS identifications, sizes, masses, etc.) in RDS format.</span></p> <p><span>SI#2 Cassenade dataset (morphological and ZooMS identifications, sizes, masses, etc.) in CSV format.</span></p> <p><span>SI#3 R script used for making the figures and statistical tests</span></p>
SI and ZooMS spectra Cassenade (MALDI-TOF-MS)
<p>Supplementary Information (SI) for the paper:</p> <p>Ruebens, K., Discamps, E., Smith, G. M., Hublin, J-J. Integrating ZooMS and zooarchaeology to assess the Châtelperronian and carnivore occupations at Cassenade (Dordogne, France), published in the gold open access journal PaleoAnthropology.</p> <ul> <li>SI 1: individual raw data files (10 .zip files with 2,550 mzxml files, representing 840 bone samples and 10 blanks, each spotted in triplicate, organised in 10 MALDI runs)</li> <li>SI 2: excel database listing information on plate number, MALDI run and triplicates (spot location), the identified peptide markers and ZooMS identifications (Barcode ID).</li> <li>SI 3: excel database with ZooMS identifications, zooarchaeological data (incl. body size classes) and taphonomic observations</li> <li>SI 4: excel database with the spatial coordinates for the piece-plotted bone fragments</li> <li>SI 5: tables for the statistical tests</li> <li>SI 6: R script used for making the figures and statistical tests</li> </ul> <p>Note: samples CAS-190-248 relate to bone fragments from old excavations which are not reported in this paper so not included in this database. </p> <p>Note: All samples were extracted using an AmBic protocol, except for samples 856-876 which were demineralised using HCl. </p> <p>For any questions please contact Karen Ruebens.</p> <p>Please use the DOI (10.5281/zenodo.11102785) when citing this dataset.</p>
MALDI-TOF-MS spectra of modern Australian marsupials for ZooMS (Zooarchaeology by Mass Spectrometry)
<p>MALDI-TOF-MS spectra of extracted collagen from modern Australian marsupials. These spectra were used to develop peptide markers for Zooarchaeology by Mass Spectrometry (ZooMS). All spectra are uploaded in .mzml format.</p> <p>One sample per species was also analyzed with LC-MS/MS (indicated in the metadata file). The LC-MS/MS data is available at PXD027107 through MassIVE (doi:10.25345/C5TC2H). Information about the species and sample numbers can be found in the metadata file.</p>
MALDI-TOF Spectra for Zooarcheology by Mass Spectrometry (ZooMS) for Borić et al. (2021)
<p>This dataset contains MALDI-TOF spectral data in .mzML format for zooarcheology by mass spectrometry (ZooMS) samples referenced in Borić et al. (2021).</p> <p>Folder names correspond to the ZooMS sample names referenced in the article. Files in the same folder are technical replicates.</p>
ZooMS spectra Salzgitter-Lebenstedt
<p>This ZooMS dataset is a supplement to the paper:</p> <p>Ruebens, K., Smith, G.M., Fewlass, H., Sinet-Mathiot, V., Hublin, J-J., Welker, F. Neanderthal subsistence, taphonomy and chronology at Salzgitter-Lebenstedt (Germany): a multifaceted analysis of morphologically unidentifiable bone. Journal of Quaternary Science. <a href="https://doi.org/10.1002/jqs.3499">https://doi.org/10.1002/jqs.3499</a></p> <p>This dataset contains txt files of MALDI spectra (merged triplicates) from both AmBic and Acid extractions of bone fragments from the Middle Palaeolithic site of Salzgitter-Lebenstedt (Germany), and an excel database listing the identified peptide markers and ZooMS identifications. If Acid extractions did not result in identifiable spectra, an AmBic equivalent was not always created, hence there are more Acid than AmBic spectra in this dataset. </p> <p>For any questions please contact Karen Ruebens. <br> <br> Please use the DOI when citing this dataset. </p>
MALDI-TOF-MS spectra of archaeological bone fragments from Klipdrift Shelter (South Africa) for ZooMS
<p>MALDI-TOF-MS spectra for archaeological bone fragments from Klipdrift Shelter (South Africa). All spectra are uploaded in .mzml format.</p>
"Presenting Euroqcharm project outcomes to foster global database synchronization" Zoom Webinar video recording
<p>Video recording of the "Presenting Euroqcharm project outcomes to foster global database synchronization" Zoom Webinar</p>
UBL000049243 - Costumen en Usantien der Stadt Bergen op Zoom
<p>Titel: <em>Costumen en Usantien der Stadt Bergen op Zoom</em></p> <p>Publisher<em>: Michiel Knobbaert</em></p> <p>Place: Antwerpen</p> <p>Year:1682</p> <p>Used version: The copy we used for the transcriptions is held at the UBLeiden and digitised by the KB National Library of the Netherlands.</p> <p>Link digitised version of the book: https://books.google.nl/books?id=LP8elMMDftMC</p> <p>(Main) Language: Dutch</p> <p>Province: Cities in Brabant</p> <p>Font:Roman.</p> <p>Model used: Dutch_Romantype_Print (public model in Transkribus)</p> <p>Version of Transkribus used: v.1.9.1.</p> <p>Other info: Abbyy FineReader v.11 has been used.</p> <p>Link model: For more information on the HTR-model used, please visit: <a href="https://lab.kb.nl/dataset/entangled-histories-ordinances-low-countries">https://lab.kb.nl/dataset/entangled-histories-ordinances-low-countries</a>.</p> <p>Transcription conventions:</p> <ul> <li> <p>The abbreviations have been written out into full words.</p> </li> <li> <p>The hyphens at the end of a line have been kept (when there).</p> </li> </ul> <p>If you are in need of the original scans of the documents, please contact <a href="mailto:xxxxxx@kb.nl">dataservices@kb.nl</a>.</p> <p>This transcription is part of the dataset created with the ‘Entangled Histories’-project.</p> <p>PI: dr. C.A. Romein;<br> Scientific Programmer: S.F. Veldhoen, MSc;<br> Project Manager: drs. M. de Gruijter.</p>
MALDI-TOF-MS archaeological spectra and for African bovid collagen for Zooarchaeology by Mass Spectrometry (ZooMS) from Zambia
<p>The MALDI data for archaeological samples from Zambia. The spectra are all in the folder in .mzml format. The samples are labeled the same as in the corresponding manuscript. The modern African bovid spectra that were used to determine markers can be found at Zenodo doi:10.5281/zenodo.3964709.</p>
Supplemtary Data 2 - Panga ya Saidi Averaged Spectra for Zooarchaeology by Mass Spectrometry Analysis (ZooMS)
<p>Averaged ZooMS spectra from Iron Age deposits at Panga ya Saidi, Kenya 2020.</p>
023488_2050_zoom_location_004_mars_hirise
023488_2050_zoom_location_004_mars_hirise depression -- another look into this area: https://skfb.ly/6MW87 more info may be available here: "Proposed Landing Site in Mawrth Vallis" https://www.uahirise.org/dtm/dtm.php?ID=ESP_023488_2050 This signal was analyzed by Organic. Tools used: gdal, qgis, houdini https://www.instagram.com/organiccomputer/ Source: Objaverse 1.0 / Sketchfab
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International Brain Laboratory public data
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OpenNeuro
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