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98 results for “almonds”
Carbon emissions and economic assessment of farm operations under different tillage practices in organic rainfed almond orchards under semiarid Mediterranean conditions
<p>This dataset corresponds to yield, price and fuel consumption from organic rainfed almond orchards in SE Spain under different diversification and tillage practices. The objective is to carry out an integrated environmental (focused on the CO<sub>2</sub> emissions) and economic assessment of farm operations under different diversification and tillage practices through a cradle-to-farm gate life cycle assessment (LCA) based on these data.</p> <p>These data correspond to the open-access article " Carbon emissions and economic assessment of farm operations under different tillage practices in organic rainfed almond orchards under semiarid Mediterranean conditions" published in Scientia Horticulturae. (https://doi.org/10.1016/j.scienta.2019.108978), funded by the European Commission Horizon 2020 project Diverfarming [grant agreement 728003].</p>
NIR-Almond_Data_Freeze-drying_Lösel_Shakiba
<p>The impact of freeze-drying on the origin determination of almonds by near-infrared (NIR) spectroscopy was investigated. This upload contains four data sets of the same 72 authentic almond samples from six different countries of origin, which have been measured with NIR without freeze-drying and after 3 hours, 24 hours and 48 hours of freeze-drying.</p>
Figure. 2 in First Report of the Peach Root-Knot Nematode, Meloidogyne floridensis Infecting Almond on Root-Knot Nematode Resistant´Hansen 536µ and´Brightµs Hybrid 5µ Rootstocks in California, USA
Figure. 2: Meloidogyne floridensis. (A–C) Anterior region of J2s; (D and E) Head region of males; (F–H) Posterior region of J2s; (I and J) Posterior region of males; (K) Lateral field of male; (L–N) Perineal patterns of females. Scale = 10 μm for A–J and 20 μm for L–N.
Figure. 1 in First Report of the Peach Root-Knot Nematode, Meloidogyne floridensis Infecting Almond on Root-Knot Nematode Resistant´Hansen 536µ and´Brightµs Hybrid 5µ Rootstocks in California, USA
Figure. 1: (A) Root galls on 'Hansen 536' rootstock of almond trees (Prunus dulcis) as scion; (B) Almond tree infected tree with Meloidogyne floridensis; (C) Almond tree, healthy.
Finca Los Escuderos: rainfed almond study site
<p>The Soil and Water Conservation Group of CEBAS-CSIC presents case study 1 of the Diverfarming project. In this case study we transformed a rainfed agrosystem with traditional almond tree monoculture into a diversified system, in order to increase ecosystem and economic benefits.</p> <p>Part of the work is carried out in the field following an experimental design, all the decisions are made in a participatory framework, involving different stakeholders. This is one out of 13 case studies on diversification established at different European climatic zones. In addition, the project incorporates 9 more case studies with a long history of sustainable practices to evaluate in the long term the ecosystem services provided. The work in the case study 1 is carried out in collaboration with the group of Enzymology, Bioremediation and Management of Organic Waste of the CEBAS-CSIC, ASAJA, DML and UPCT. </p> <p>Visit our website to follow the latest results of our research: <a href="https://www.youtube.com/redirect?v=-i48LeiBir0&event=video_description&q=http%3A%2F%2Fwww.soilwaterconservation.es%2F&redir_token=x69DT77W9QkmpK5AXTSRYZ-Lf5Z8MTU0MTY4NDQ5OEAxNTQxNTk4MDk4">http://www.soilwaterconservation.es/</a></p>
Data of soil mineralization rates, carbon and nitrogen pools in a rainfed almond crop and an irrigated mandarin crop derived from Diverfarming project
Data of soil carbon and nitrogen dynamics, auxiliary data and methods metadata from a rainfed almond crop and an irrigated mandarin crop studied in Diverfarming project
A phased genome of the highly heterozygous 'Texas' almond uncovers patterns of allele-specific expression linked to heterozygous structural variants
<h2># Genomic datasets associated to the publication: </h2> <h3># Gene-ID conversion with previous genome version</h3> <p>Texasv3_vs_Texasv2_GeneID.txt -- gene ID conversion between Texasv3 and Texasv2 (https://www.rosaceae.org/analysis/295)</p> <p>pdulcis26_to_F1_liftoff_polished.gff3 -- Texasv2 gene annotation liftoff on Phase-1 assembly (Phase-1 coordinates)</p> <h3># Phase-1</h3> <p>Texas_F1_K80_chr.fasta -- genome asssembly, phase-1 <br>Texas_F1_gene_models.gff3 -- phase-1 gene annotation (de novo annotation)<br>Functional_annotation_TexasF1.csv -- phase-1 gene functions <br>Texas_F1_ref_SV.vcf --- Structural variations relative to phase-0 (This file uses Phase-1 as reference)</p> <h3># Phase-0</h3> <p>Texas_F0_K80_chr.fasta -- genome asssembly, phase-0 <br>Texas_F0_gene_models.gff3 -- phase-0 gene annotation (liftoff from Phase-1)<br>Functional_annotation_TexasF0.csv -- phase-0 gene functions <br>Texas_F0_ref_SV.vcf --- Structural variations relative to phase-1 (This file uses Phase-0 as reference)</p> <h3># Transposable element annotation</h3> <p>Texas_F0_HiConf_TE_v3.gff3 --- TE annotation in Phase-0<br>Texas_F1_HiConf_TE_v3.gff3 --- TE annotation in Phase-1<br>Texasv3_TElib.fa --- TE library of TexasV3 (non-redundant repeat consensuses taking the account the two genome phases)</p> <h3># Gene sequences in fasta</h3> <p>Transcript, CDS and protein sequences in fasta format for phase-0 (F0) and phase-1 (F1) </p>
Phenotypic and Genetic data for "Evolution of fruit and seed traits during almond naturalization"
<p>1- Cultivated plant species often naturalize and enter wild communities in a process known as feralization. To successfully feralize, crops must overcome ecological barriers and may undergo selection on certain traits, diverging phenotypically and genetically from their crop ancestors. In spite of the agronomic and ecological relevance of crop feralization, the eco-evolutionary dynamics driving it remain understudied.</p> <p>2- In this paper, we evaluated phenotypic and genotypic differentiation in fruit and seed traits during the naturalization of the almond tree (Prunus dulcis (Mill.) D.A. Webb) in SE Iberia and evaluated the potential role of natural selection in this process. To do so, we investigated patterns of genetic divergence between cultivated and feral populations using functional (the cyanogenesis Sk gene) and neutral (17 SSR loci) markers and analyzed morphological and biochemical traits in kernels of 342 individuals from 15 cultivated and 24 feral populations.</p> <p>3- We detected very little genetic differentiation in neutral markers between cultivated and feral populations. The majority of the observed genetic variation was due to differences within each type. Conversely, the recessive allele sk responsible for seed toxicity was significantly more frequent in feral populations. Phenotypic differentiation between cultivated and naturalized almond populations was also significant. Feral almond kernels were smaller and lighter, had denser and more resistant shells (endocarps) and more toxic seeds. Selection analyses indicated that these genetic and phenotypic patterns might be driven by directional selection on fruit and seed traits, potentially linked to defense against predation.</p> <p>4- Synthesis. Our findings indicate that almond naturalization is consistent with strong directional selection on fruits and seeds, leading to smaller and more toxic seeds encased in harder endocarps. Accordingly, we propose that feralization of this crop is, at least to some degree, driven by adaptive evolution of dispersal and recruitment traits.</p>
Supporting data and code for: Thiophanate-methyl and carbendazim resistance in Fusicoccum amygdali, the causal agent of constriction canker of peach and almond
<p>This is the first release of the final data and code for the article accepted for publication in Plant Pathology journal. It contains all the necessary scripts to perform the data analysis and to produce the Figures. All the necessary data can be found in the 'data' folder.</p>
Pollination dependency and deficit in three almond varieties from Morocco
<p>The contribution of insects to pollination constitutes a globally important ecosystem service. Due to the increasing demand for entomophilous crops, the nutritional and economic importance of insect-pollinated crops and the inability of managed pollinators (<em>Apis mellifera L</em>) to meet the high demand for their services indicate that agriculture heavily relies on wild pollinators. Almonds are an economically valuable crop in Morocco. Therefore, it is essential to understand the fundamental pollination requirements of major almond varieties to promote their production. The main objectives of this study were to assess the dependency of three almond cultivars (Espoir, Largueta and Planeta) on insect pollination, and then to evaluate the pollination deficit resulting from the lack of these pollinators. For this purpose, we used insect-proof net bags constructed around branches of almond trees to compare fruit set and yield with open and open + hand-pollinated flowers. The results of the fruit set experiment confirmed that all three varieties require insect pollination, as fruit set and yield were significantly higher in insect-pollinated than insect-isolated trees. All three almond varieties were categorized as obligatory dependent on biotic pollinators. In addition, two out of the three studied almond varieties showed high pollination deficit resulting from the lower abundance and/or diversity of pollinating insects. Results of the current study highlights the important role of insect pollinators for almond crops and the urgent need for the implementation of sustainable strategies to preserve pollinators within agricultural ecosystems.</p>
Figure 1 in Ichneumonid parasitoids of the sawfly Cimbex quadrimaculata (Müller) feeding on almonds in Antalya, along with a new parasitoid and new record
Figure 1. Cimbex quadrimaculata (Müller): a) Adult; b) Larva and its damage on almond foliage.
Fig. 1 in On the Curculionoidea (Coleoptera) fauna of Almond (Amygdalus communis L.) Orchards in South-eastern and Eastern Anatolia in Turkey
Fig. 1. Surveyed areas in Elazığ (1), Diyarbakır (2) and Mardin (3).
Almonds: Digestive Health and Immune Function of Adults and Children
ClinicalTrials.gov study NCT01973595. IPD Sharing: Not stated. Countries: 1. Publications: 1.
The Effect of Whole Almonds on Biomarkers of Cardiovascular Disease in Chinese Patients With Type 2 Diabetes
ClinicalTrials.gov study NCT01656850. IPD Sharing: NO. Countries: 1. Publications: 1.
Orchard floor plant communities: Multispecies cover crops in commercial almond orchards
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Soil physical, biological, chemical, and carbon data and cover crop biomass data from Sac Valley almond orchard comparing multiple cover crop compositions with resident vegetation for effects on soil health and nematodes
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Phenotypic and Genetic data for "Evolution of fruit and seed traits during almond naturalization"
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Pollination dependency and deficit in three almond varieties from Morocco
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Data from: Comparison of yield characteristics of independence, a self-compatible almond variety, as affected by presence of honey bee pollinators
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Data from: Evolutionary history of almond tree domestication in the Mediterranean basin
Genetic diversity of contemporary domesticated species is shaped by both natural and human-driven processes. However, until now, little is known about how domestication has imprinted the variation of fruit tree species. In this study, we reconstruct the recent evolutionary history of the domesticated almond tree, Prunus dulcis, around the Mediterranean Basin, using a combination of nuclear and chloroplast microsatellites (i.e. SSRs) to investigate patterns of genetic diversity. Whereas conservative chloroplast SSRs show a widespread haplotype and rare locally distributed variants, nuclear SSRs show a pattern of isolation by distance with clines of diversity from the East to the West of the Mediterranean basin, while Bayesian genetic clustering reveals a substantial longitudinal genetic structure. Both kinds of markers thus support a single domestication event, in the eastern side of Mediterranean basin. In addition, model-based estimation of the timing of genetic divergence among those clusters is estimated sometime during the late Holocene, a result that is compatible with human-mediated dispersal of almonds out of its center of origin. Still, the detection of region-specific alleles suggests that gene flow from relictual wild pre-glacial populations (in North Africa) or from wild counterparts (in the Near-East) could account for a fraction of the diversity observed.
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