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2,609 results for “aves”
GRIME AI Water Segmentation Model for the USGS Monitoring Site Chippewa River at Grand Ave at Eau Claire, WI, 2023-2024
Ground-based observations from fixed-mount cameras have the potential to fill an important role in environmental sensing, including direct measurement of water levels and qualitative observation of ecohydrological research sites. All of this is theoretically possible for anyone who can install a trail camera. Easy acquisition of ground-based imagery has resulted in millions of environmental images stored, some of which are public data, and many of which contain information that has yet to be used for scientific purposes. The goal of this project was to develop and document key image processing and machine learning workflows, primarily related to semi-automated image labeling, to increase the use and value of existing and emerging archives of imagery that is relevant to ecohydrological processes. This data package includes imagery, annotation files, water segmentation model and model performance plots, and model test results (overlay images and masks) for the USGS Monitoring Site Chippewa River at Grand Ave at Eau Claire, WI, 2023-2024. All imagery was acquired from the USGS Hydrologic Imagery Visualization and Information System (HIVIS; see https://apps.usgs.gov/hivis/camera/WI_Chippewa_River_at_Grand_Ave_at_Eau_Claire for this specific data set) and/or the National Imagery Management System (NIMS) API. Water segmentation models were created by tuning the open-source Segment Anything Model 2 (SAM2, https://github.com/facebookresearch/sam2) using images that were annotated by team members on this project. The models were trained on the "water" annotations, but annotation files may include additional labels, such as "snow", "sky", and "unknown". Image annotation was done in Computer Vision Annotation Tool (CVAT) and exported in COCO format (.json). All model training and testing was completed in GaugeCam Remote Image Manager Educational Artificial Intelligence (GRIME AI, https://gaugecam.org/) software (Version: Beta 16). Model performance plots were automatically gen
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Franklin Creek, Carpinteria Ave (FK00)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Franklin Creek, Carpinteria Ave in the Santa Barbara coastal area (site ID: FK00). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness
<p>Data used in phylogenomic analyses of manakin birds. </p> <p>Datasets number 1 to 7 include sequence alignments for each locus analyzed, and datasets 4 to 7 also contain gene trees used as input for ASTRAL.</p>
Cambios en el uso del suelo y sus efectos a diferentes escalas espaciales y temporales sobre la diversidad de aves en el Bajo Delta del río Paraná
<p>Mapas de coberturas y cambios que acompañan la tesis doctoral "<em>Cambios en el uso del suelo y sus efectos a diferentes escalas espaciales y temporales sobre la diversidad de aves en el Bajo Delta del río Paraná" </em>de Yanina V. Sica. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Marzo 2016</p> <p>Land cover maps and land cover transitions that support the doctoral dissertation" <em>Cambios en el uso del suelo y sus efectos a diferentes escalas espaciales y temporales sobre la diversidad de aves en el Bajo Delta del río Paraná" </em>by Yanina V. Sica. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. March 2016</p> <p>https://bibliotecadigital.exactas.uba.ar/collection/tesis/document/tesis_n6020_Sica</p> <p>Incluye:</p> <p>- Mapa de cambio (principales transiciones) en el uso y las coberturas del suelo del Bajo Delta de Paraná (2013-1994)</p> <p>- Mapa de usos y coberturas del suelo del Bajo Delta de Paraná (2013 y 1994/99)</p> <p>- Mapa de subclases de usos y coberturas del suelo del Bajo Delta de Paraná (2013 y 1994/99)</p> <p>- Versión vectorial (geopackage) del Mapa de usos y coberturas del suelo del Bajo Delta de Paraná (2013)</p> <p>- Paletas para cargar los mapas de QGIS</p> <p>- Tabla con las definiciones de las clases</p>
Data associated with the publication "The origin of the world's smallest flightless bird, the Inaccessible Island Rail Atlantisia rogersi (Aves: Rallidae)"
<p><strong>DESCRIPTION OF FILES</strong><br> These are files including data and additional results, that support the paper "The origin of the world's smallest flightless bird, the Inaccessible Island Rail Atlantisia rogersi (Aves: Rallidae)", by Stervander et al. 2018, published in Molecular Phylogenetics and Evolution (doi: 10.1016/j.ympev.2018.10.007).</p> <p>The phylogenetic analyses focus on rails (Aves: Rallidae) and outgroups based on (1) a dataset, 'MtProt' comprising the coding sequences (cds) from full mitochondrial genome assemblyes, and (2) a mixed-marker dataset, '2Nc3Mt', comprising the mitochondrial markers cytochrome <em>b</em> (cyt<em>b</em>), cytochrome oxidase subunit I (COI), and 16S ribosomal RNA (16S), and the nuclear markers β-fibrinogen intron 7 (bFib7) and recombination activating gene 1 (RAG1). The latter dataset i largely based on data from Garcia-R et al. (2014), with additions of the Inaccessible Island Rail <em>Atlantisia rogersi</em> and some further sequences (see our paper).</p> <p>Trees mentioned in our paper as "results not shown" can be found below.</p> <p><br> <strong>This deposition contains five groups of data:</strong><br> 1. Beast input xml files for phylogenetic analyses<br> 2. Beast output: log files<br> 3. Beast output: raw tree files<br> 4. Beast output: Maximum Clade Credibility trees<br> 5. Tree figures (pdf format)</p> <p><strong>The above are available for the following analyses:</strong><br> A. Mixed-marker dataset ‘2Nc3Mt’, one tree <br> B. Mixed-marker dataset ‘2Nc3Mt’, one tree; Micropygia schomburgkii excluded<br> C. Mixed-marker dataset ‘2Nc3Mt’, separate mitochondrial (‘3Mt’) and nuclear marker trees (RAG1 and bFib7)<br> D. Protein coding dataset ‘MtProt’ from entire mitochondrial genomes</p> <p>The files are thus the following, sorted according to dataset:<br> A1 Beast_input_2Nc3Mt_1tree.xml<br> A2 Beast_output_2Nc3Mt_1tree.log<br> A3 Beast_output_2Nc3Mt_1tree.raw.trees<br> A4 Beast_output_2Nc3Mt_1tree.max_clade_cred_burnin10M.trees<br> A5 Tree_2Nc3Mt_1tree.max_clade_cred_burnin10M.pdf<br> B1 Beast_input_2Nc3Mt_exclMicropygia_1tree.xml<br> B2 Beast_output_2Nc3Mt_exclMicropygia_1tree.log<br> B3 Beast_output_2Nc3Mt_exclMicropygia_1tree.raw.trees<br> B4 Beast_output_2Nc3Mt_exclMicropygia_1tree.max_clade_cred_burnin10M.trees<br> B5 Tree_2Nc3Mt_exclMicropygia_1tree.max_clade_cred_burnin10M.pdf<br> C1 Beast_input_2Nc3Mt_separate_trees.xml<br> C2 Beast_output_2Nc3Mt_separate_trees.log<br> C3 Beast_output_2Nc3Mt_RAG1.raw.trees<br> C3 Beast_output_2Nc3Mt_bFib7.raw.trees<br> C3 Beast_output_2Nc3Mt_mt.raw.trees<br> C4 Beast_output_2Nc3Mt_RAG1.max_clade_cred_burnin10M.trees<br> C4 Beast_output_2Nc3Mt_bFib7.max_clade_cred_burnin10M.trees<br> C4 Beast_output_2Nc3Mt_mt.max_clade_cred_burnin10M.trees<br> C5 Tree_2Nc3Mt_RAG1.max_clade_cred_burnin10M.trees.pdf<br> C5 Tree_2Nc3Mt_bFib7.max_clade_cred_burnin10M.trees.pdf<br> C5 Tree_2Nc3Mt_mt.max_clade_cred_burnin10M.trees.pdf<br> D1 Beast_input_MtProt_1tree.xml<br> D2 Beast_output_MtProt_1tree.log<br> D3 Beast_output_MtProt_1tree.raw.trees<br> D4 Beast_output_MtProt_1tree.max_clade_cred_burnin1M.trees<br> D5 Tree_MtProt_1tree.max_clade_cred_burnin1M.pdf</p> <p>Or, sorted according to file type:<br> 1A Beast_input_2Nc3Mt_1tree.xml<br> 1B Beast_input_2Nc3Mt_exclMicropygia_1tree.xml<br> 1C Beast_input_2Nc3Mt_separate_trees.xml<br> 1D Beast_input_MtProt_1tree.xml<br> 2A Beast_output_2Nc3Mt_1tree.log<br> 2B Beast_output_2Nc3Mt_exclMicropygia_1tree.log<br> 2C Beast_output_2Nc3Mt_separate_trees.log<br> 2D Beast_output_MtProt_1tree.log<br> 3A Beast_output_2Nc3Mt_1tree.raw.trees<br> 3B Beast_output_2Nc3Mt_exclMicropygia_1tree.raw.trees<br> 3C Beast_output_2Nc3Mt_RAG1.raw.trees<br> 3C Beast_output_2Nc3Mt_bFib7.raw.trees<br> 3C Beast_output_2Nc3Mt_mt.raw.trees<br> 3D Beast_output_MtProt_1tree.raw.trees<br> 4A Beast_output_2Nc3Mt_1tree.max_clade_cred_burnin10M.trees<br> 4B Beast_output_2Nc3Mt_exclMicropygia_1tree.max_clade_cred_burnin10M.trees<br> 4C Beast_output_2Nc3Mt_RAG1.max_clade_cred_burnin10M.trees<br> 4C Beast_output_2Nc3Mt_bFib7.max_clade_cred_burnin10M.trees<br> 4C Beast_output_2Nc3Mt_mt.max_clade_cred_burnin10M.trees<br> 4D Beast_output_MtProt_1tree.max_clade_cred_burnin1M.trees<br> 5A Tree_2Nc3Mt_1tree.max_clade_cred_burnin10M.pdf<br> 5B Tree_2Nc3Mt_exclMicropygia_1tree.max_clade_cred_burnin10M.pdf<br> 5C Tree_2Nc3Mt_RAG1.max_clade_cred_burnin10M.trees.pdf<br> 5C Tree_2Nc3Mt_bFib7.max_clade_cred_burnin10M.trees.pdf<br> 5C Tree_2Nc3Mt_mt.max_clade_cred_burnin10M.trees.pdf<br> 5D Tree_MtProt_1tree.max_clade_cred_burnin1M.pdf</p> <p><strong>Note about the tree figures (pdf format): </strong>Nodes marked with a black circle are supported by a posterior probability (PP) of 1.0, for lower PP the number is given at the node. Blue bars represent the 95% highest posterior density intervals of the node age. MYA = Million years ago.</p> <p>/Martin Stervander (martin@stervander.com)</p>
Fig. 1 in A new genus for the Lesser Moorhen Gallinula angulata Sundevall, 1850 (Aves, Rallidae)
Fig. 1. Bayesian analysis of the Fulica-clade (sensu García-R et al. 2014a). Numbers above nodes indicate posterior probabilities from Bayesian analysis. Numbers below nodes are percent bootstrap values from Maximum Likelihood analysis. Colours indicate relevant clades with current nomenclature at branch tips. Coloured genus names are those adopted here to reconcile phylogeny and known morphological diversity.
Fig. 2. Lesser Moorhen Paragallinula angulata Sundevall, 1850 in A new genus for the Lesser Moorhen Gallinula angulata Sundevall, 1850 (Aves, Rallidae)
Fig. 2. Lesser Moorhen Paragallinula angulata Sundevall, 1850, Kgomo Kgomo, South Africa, Feb. 2011 (photo by Mark Tittley). This photograph illustrates two diagnostic character states differentiating Paragallinula from the genus Gallinula: the orange colouration on the frontal shield does not cover the entire shield, and the lack of a contrasting reddish band on the legs proximal to the ankle joint
Figure 2 in Ringing studies of the turtle dove Streptopelia turtur (Aves: Columbidae during passage through Antikythera Island, southwestern Greece
Figure 2. Spring migration phenology of the turtle dove through Antikythera based on netting. Arrow shows the median passage date of the species.
Figure 1 in Range and natural history of point-tailed palmcreepers (Aves: Furnariidae)
Figure 1. Range of point-tailed palmcreepers Berlepschia rikeri based on a wide review of the literature (dark circles), personally examined museum specimens (dark squares), online databases (dark triangles) and unpublished field records (white triangles). The dashed line indicates the range of this species according to Ridgely and Tudor (2009).
Figure 7 in The vocal repertoire of Myrmeciza loricata (Lichtenstein, 1823) (Aves: Thamnophilidae)
Figure 7. Sonograms of other notes (call III) of Myrmeciza loricata. (A) Notes "D + E". (B) Note "F". (C) Note "I" emitted with call II. (D) Note "G". (E) Note "H". (F) Note "J" emitted with call II.
Figure 4 in The vocal repertoire of Myrmeciza loricata (Lichtenstein, 1823) (Aves: Thamnophilidae)
Figure 4. Sonograms of the call I (alarm) of Myrmeciza loricata. (A) Rattle phrases sequence. (B) Zoom showing the series of vertical tick notes.
Systematics of a Neotropical clade of dead-leaf-foraging antwrens (Aves: Thamnophilidae; Epinecrophylla)
<p>The stipple-throated antwrens of the genus <i>Epinecrophylla</i> (Aves: Thamnophilidae) are represented by eight species primarily found in the lowlands of the Amazon Basin and the Guiana Shield. The genus has a long and convoluted taxonomic history, with many attempts made to address the taxonomy and systematics of the group. Here we employ massively parallel sequencing of thousands of ultraconserved elements (UCEs) to provide both the most comprehensive subspecies-level phylogeny of <i>Epinecrophylla</i> antwrens and the first population-level genetic analyses for most species in the genus. Most of our results are robust to a diversity of phylogenetic and population genetic methods, but we show that even with thousands of loci we are unable to fully resolve the relationships between some western Amazonian species in the <i>haematonota </i>group. We uncovered phylogenetic relationships between taxa and patterns of population structure that are discordant with both morphology and current taxonomy. For example, we found deep genetic breaks between taxa in the <i>ornata </i>group that are currently regarded as species, and in the <i>haematonota </i>and <i>leucophthalma</i> groups we found paraphyly at the species and subspecies levels, respectively. As has been found in many Amazonian taxa, our phylogenetic results show that the major river systems of the Amazon Basin appear to have an effect on the genetic structure and range limits within <i>Epinecrophylla</i>. Our population genetics analyses showed extensive admixture between some taxa despite their deep genetic divergence. We present a revised taxonomy for the group and suggest areas for further study.</p>
Molecular species delimitation of larks (Aves: Alaudidae), and integrative taxonomy of the genus Calandrella, with the description of a range-restricted African relic taxon
<p>This deposition contains the phylogenetic and species delimitation data for the manuscript "Molecular species delimitation of larks (Aves: Alaudidae), and integrative taxonomy of the genus <em>Calandrella</em>, with the description of a range-restricted African relic taxon" by Stervander <em>et al</em>. </p> <p>For details of samples/sequences/leaves, please refer to Appendix A of the above manuscript. </p> <p><strong>Phylogenetic analyses</strong></p> <ol> <li>Fasta sequence alignment of cytochrome b for the lark family and outgroups: Alaudidae_cytb_extended_200316.fa</li> <li>BEAST v. 2.6.1 input file: Alaudidae_cytb_HKYGI_BDrelLN_modOp2003_20M1K.xml</li> <li>BEAST v. 2.6.1 output log file: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K.log</li> <li>BEAST v. 2.6.1 output (raw) trees file: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K.trees</li> <li>TreeAnnotator maximum credibility clade tree based on BEAST v. 2.6.1 output, newick format: Alaudidae_cytb_HKYGI_BDrelLN_modOp_20M1K_c40Mbi5.mccmed.nwk</li> </ol> <p><strong>Species delimitation</strong></p> <ol> <li>Input tree, manipulated to remove negative branch lengths (replaced by 0) and tips/leafs that are single representatives of a species, based on current taxonomy (IOC v. 10.2), newick format: Alaudidae_cytb_HKYGI_BDrelLN_c40Mbi5_mccmed_nonNeg_multiSeq_ingroup_remDuplicate.nwk</li> <li>mPTP text output of the multi-rate species delimitation, containing command for run and species delimitation results: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.1602073064.txt</li> <li>mPTP likelihood log of the multi-rate species delimitation: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.out.txt</li> <li>mPTP output tree in SVG format, with support values for species delimitation: Alaudidae200316_cytb_HKYGI_BDrelLN_c40Mbi5_remDuplCaboweni201007_mccmed_delim_varRate_10M_minbrAUTO.1602073064.combined.svg</li> </ol>
Reconciling supertramps, great speciators and relict species with the taxon cycle stages of a large island radiation (Aves: Campephagidae)
<p><strong>Aim</strong>: The taxon cycle concept provides a geographically explicit and testable set of hypotheses for exploring the evolutionary processes underlying the distribution of species in space and time. Here, we test taxon cycle predictions within a large avian island radiation, the core Campephagidae and explicitly integrate the concepts of 'supertramps', 'great speciators' and relictualization.</p> <p><strong>Location</strong>: The Indo-Pacific, Australia, Asia and Africa.</p> <p><strong>Taxon</strong>: Corvoid passerine birds.</p> <p><strong>Methods</strong>: We constructed a new time-calibrated molecular phylogeny of the core Campephagidae (cuckoo-shrikes, cicadabirds and trillers) using Bayesian phylogenetic methods. Ancestral range estimation methods and diversification rate analyses were used to explore the dispersal and diversification history of the group. We used an extensive dataset on wing morphology and range distributions to test for correlations between evolutionary age of species and dispersal capacity, diversification and distribution, while accounting for phylogenetic non-independence.</p> <p><strong>Results</strong>: The core Campephagidae represents an ecologically homogeneous radiation distributed across the Indo-Pacific, Australia, South-East Asia and Africa. Its members represent a continuum of dispersal abilities; some species are widespread and undifferentiated ('supertramps') or show strong differentiation of local populations ('great speciators'), and a few are endemic to single islands (relicts). We show that older species relative to younger species inhabit fewer and larger islands at higher elevations. The level of intraspecific variation measured as the number of subspecies also decreases with species age, and is highest in 'great speciators' with intermediate levels of dispersal abilities (as per hand-wing index).</p> <p><strong>Main conclusions</strong>: Based on trait correlations with species age, we infer phases of range expansion and contraction over millions of years (taxon cycles), within a single monophyletic group of birds. These observations demonstrate reconciliation of the concepts of 'supertramps', 'great speciators' and relictual paleo-endemics within the temporal stages of the taxon cycle.</p>
Fig 1 in A distinctive new species of gnatcatcher in the Polioptila guianensis complex (Aves, Polioptilidae) from western Amazonian Brazil
<p>Figure 1.</p> <p>Geographic distribution of Polioptila attenboroughi and of documented records of P. paraensis in Amazonian Brazil. A red star marks the type locality of P. attenboroughi at “Tupana Lodge”. And letters adjacent to red locality dots provide documentation: S = specimen; V = vocal recording; n = undocumented sight-records. White dots mark documented records of presumed P. paraensis (type locality Benevides, Pára, near Belém), including on P. marking a site documented by a photograph archived on the website www.wikiaves.com.br (WA589871). Black lines mark the boundaries of Brazilian states as indicated by their abbreviations: AM = Amazonas; RO = Rondônia; MT = Mato Grosso; PA = Pará. The federal highways BR-319 (linking Manaus and Porto Velho, running north-south) and BR-230 (“Transamazônica” running mostly east-west) are shown in white.</p>
Fig 2 in A distinctive new species of gnatcatcher in the Polioptila guianensis complex (Aves, Polioptilidae) from western Amazonian Brazil
<p>Figure 2.</p> <p>Spectrograms of characteristic vocalizations of Polioptila attenboroughi for comparison with homologous vocalizations of the Polioptila schistaceigula complex, and of other taxa presented at the same spectrogram scales by Whitney and Álvarez (2005). A) P. attenboroughi loudsong (Amazonas, ca 50 km south Humaitá; 17 December 2011, Whitney recording BMW-15034); B) P. paraensis loudsong (Pará, ca 53km west Jacareacanga; 14 July 2008, Whitney recording BMW-4261). This is the same locality from which the tissue sample representing P. paraensis used in this study was collected. The sample of loudsongs measured in the vocal analysis, from nearer the type locality of P. paraensis, was considerably faster-paced (see data in SI, and spectrogram C in figure 3 of Whitney and Álvarez 2005); C) P. attenboroughi complex song (Amazonas, ca 50 km south Humaitá; 19 December 2010, Whitney recording BMW-11956). D) P. schistaceigula (Panamá; Darién, near Cana; 4 January 1993, Whitney recording ML-161468); E) P. attenboroughi multi-note call (same recording as A, above); F) P. schistaceigula multi-note call (same recording as D, above). Multi-note call may comprise more notes than this example; G) P. guianensis multi-note call (Amazonas, ca. 60km north Manaus, INPA tower; 13 September 2010, Whitney recoding BMW-10821); H) P. attenboroughi multi-note rasp (same recording as C, above); and I) P. schistaceigula multi-note rasp (same recording as D and F above.</p>
Fig 3 in A distinctive new species of gnatcatcher in the Polioptila guianensis complex (Aves, Polioptilidae) from western Amazonian Brazil
<p>Figure 3</p> <p>Phylogenetic relationships with the Polioptila schistaceigula/guianensis complex recovered by Bayesian analysis based on 1941 bp of ND2 sequences. Numbers refer to posterior probabilities values and genetic distances (% of average uncorrected p sequence divergence) between sister groups associated with the labeled nodes (see Table 2 in SI of detailed information). Note the paraphyly of taxa formerly grouped as subspecies of P. guianensis (guianensis and paraensis) and the new taxon P. attenboroughi described herein. High statistical support value (i.e., 1) and sequence divergence levels associated with nodes grouping Polioptila attenboroughi, P. guianensis, P. paraensis, and P, schistaceigula are, in concert with documented levels of phenotypic differentiation, consistent with their ranking as species-level taxa.</p>
FIGURE 2 in A taxonomic revision of the Musician Wren, Cyphorhinus arada (Aves, Troglodytidae), reveals the existence of six valid species endemic to the Amazon basin
FIGURE 2. Principal components analysis of morphometric characters of taxa of the Cyphorhinus arada complex, showing lack of mensural differentiation among these taxa.
FIGURE 4 in A taxonomic revision of the Musician Wren, Cyphorhinus arada (Aves, Troglodytidae), reveals the existence of six valid species endemic to the Amazon basin
FIGURE 4. Distribution of recognized species within the Cyphorhinus arada complex. Black symbols represents skins and white symbols represents tape recordings. Cyphorhinus arada: triangles; Cyphorhinus transfluvialis: pentagons; Cyphorhinus salvini: squares; Cyphorhinus modulator: circles; Cyphorhinus interpositus: inverted triangles; Cyphorhinus griseolateralis: diamonds. Stars represent the type locality of each species. Illustrations by Laura Montserrat and Michelle Konig.
FIGURE 3 in A taxonomic revision of the Musician Wren, Cyphorhinus arada (Aves, Troglodytidae), reveals the existence of six valid species endemic to the Amazon basin
FIGURE 3. Sonograms of songs typical of each recognized taxon. A and B: Cyphorhinus arada (XC 65012, XC 54717); C and D: Cyphorhinus transfluvialis (ML 113170, ML 113171); E and F: Cyphorhinus modulator (XC 39726, ML 126971); G and H: Cyphorhinus salvini (ML 28625, XC 72499); I and J: Cyphorhinus interpositus (USP 0 792, Kleber 2538); K and L: Cyphorhinus griseolateralis (XC 39960, ML 117074).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.