Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
35
datasets available to search
ShareScore release 0.9.0
Dataset results
35 results for “belowground community”
Data from: Plant diversity loss has limited effects on belowground biomass and traits but alters community short-term root production in a species-rich grassland
Open the record for dataset details and reuse information.
Plant above and belowground biomass across an N fertilization gradient after 13 years of fertilization:Nutrient Network. A cross-site investigation of bottom-up control over herbaceous plant community dynamics and ecosystem function
This experiment is one implementation of a globally distributed experiment, known as the Nutrient Network. At Cedar Creek, as in over 70 other sites in grasslands around the world, the experiment aims to describe impacts of increased nutrients (nitrogen, phosphorus, potassium, sulfur and other metals) and decreased herbivory (removal of mammals by fencing). Two overarching questions are being explored with these manipulations: 1. To what extent are plant production and diversity co-limited by multiple nutrients in herbaceous-dominated communities? 2. Under what conditions do grazers or fertilization control plant biomass, diversity, and composition? By utilizing identical protocols at diverse grassland sites around the world, NutNet aims to uncover both the generalities in ecosystem functioning, and the contingencies or differences which can obscure those common mechanisms. In addition to the standard NutNet protocol, e247 includes an additional low Nitrogen gradient (1 gram Nitrogen per meter squared per year and 5 grams Nitrogen per meter squared per year in addition to the standard 10 grams Nitrogen per meter squared per year).
Links between boreal forest management, soil fungal communities and belowground carbon sequestration
<p>Forest management has a potential to alter belowground carbon storage. However, the underlying mechanisms, and the relative importance of carbon input and decomposition in regulation of soil carbon dynamics are poorly understood.</p> <p>We examined whether interactive effects of forest fertilization and thinning on carbon stocks in the topsoil of boreal forests were linked to changes in fungal community composition, biomass, and enzyme activities, in a long-term fertilization and thinning experiment distributed across 29 Pinus sylvestris forests along a 1300 km latitudinal transect in Sweden.</p> <p>Nitrogen fertilization increased fungal biomass, particularly towards the north and mainly by promoting root associated Ascomycetes, but the response was moderated by thinning. Fungal biomass correlated positively with carbon stocks in the organic topsoil. However, ectomycorrhizal Cortinarius species were reduced in abundance by fertilization and correlated negatively with carbon stocks.</p> <p>Plausibly, increased soil carbon stocks after fertilization are linked to increased input of carbon in the form of root-associated mycelium combined with loss of ectomycorrhizal decomposers within the genus Cortinarius. These fungal responses to fertilization may mediate a natural climate solution by promoting carbon sequestration in the organic topsoil, but the effect of fertilization may also be undesired from a biodiversity perspective.</p>
Ecological and evolutionary processes shape belowground springtail communities along an elevational gradient
<p> The data sets were analyzed during the current study. Data from: Ecological and evolutionary processes shape belowground springtail communities along an elevational gradient</p>
Interactions between belowground traits and rhizosheath fungal and bacterial communities for phosphorus acquisition
<p>1. Plant-soil microbes interactions play a central role in plant nutrient acquisition and thus ecosystem functioning and nutrient availability in agroecosystems. Adjustments in root morphology, root exudation and associations with microorganisms such as arbuscular mychorrizal fungi are common for phosphorus acquisition. Yet how plant belowground functional traits interact with microbial communities for P-acquisition remains largely unknown, limiting our understanding of phosphorus availability in agroecosystems.</p> <p>2. Interactions between belowground functional traits and rhizosheath soil microbial communities for P-acquisition were investigated across eight herbaceous species with contrasting root traits. Root morphological and physiological traits involved in P-acquisition were quantified simultaneously with PLFA (phospholipid fatty acid) and NLFA (neutral lipid fatty acid) microbial bioindicators.</p> <p>3. Multiple correlations were observed between root morphology, root exudates and rhizosheath fungal and bacterial communities. Root exudates and in particular release of malate and malonate were strongly linked with indicators of Gram-negative bacteria, which were correlated with changes in rhizosheath soil P concentration and plant P content.</p> <p>4. Our results suggest that root exudation of carboxylates may play an important role in plant-soil microorganism interactions for P-acquisition, underlining their likely role in shaping microbial communities. Incorporating these interactions in biogeochemical models would lead to better predicting power and understanding of P cycling and ecosystem functioning.</p>
Fire severity as a key determinant of aboveground and belowground biological community recovery in managed even-aged boreal forests
<p><span>Changes in fire regime of boreal forests in response to climate warming are expected to impact post-fire recovery. However, quantitative data on how managed forests sustain and recover from recent fire disturbance are limited. </span></p> <p><span>Two years after a large wildfire in managed even-aged boreal forests in Sweden,</span><span> we investigated how recovery of aboveground and belowground communities, i.e., understory vegetation and soil microbial and faunal communities, responded to variation in the severity of soil (i.e., consumption of soil organic matter) and canopy fires (i.e., tree mortality). </span></p> <p><span>While fire overall enhanced diversity of understory vegetation through colonization of fire adapted plant species, it reduced the abundance and diversity of soil biota. We observed contrasting effects of tree- and soil-related fire severity on survival and recovery of understory vegetation and soil biological communities. </span><span>Severe fires that killed overstory <em>Pinus sylvestris</em> promoted a successional stage dominated by the mosses <em>Ceratodon purpureus</em> and <em>Polytrichum juniperum</em>, but reduced regeneration of tree seedlings and disfavoured the ericaceous dwarf-shrub<em> Vaccinium vitis-idaea</em> and the grass<em> Deschampsia flexuos</em>a. Moreover, high tree mortality from fire reduced fungal biomass and changed fungal community composition, in particular that of ectomycorrhizal fungi, and reduced the fungivorous soil Oribatida. In contrast, soil-related fire severity had little impact on vegetation composition, fungal communities and soil animals. Bacterial communities responded to both tree- and soil-related fire severity. </span></p> <p><span>Synthesis: Our results two years post-fire suggest that a change in fire regime from a historically low-severity ground-fire regime, with fires that mainly burns into the soil organic layer, to a </span><span>stand-replacing </span><span>fire regime with a high degree of tree mortality, as may be expected with climate change, is likely to impact the short-term recovery of stand structure and above- and belowground species composition of even-aged <em>P. sylvestris</em> </span><span>boreal forests.</span></p>
Above and belowground functional community variation in sandy dunes
<p><span>The role of plant traits in shaping community assembly along environmental gradients is a topic of ongoing research. It is well accepted that plant traits of aboveground organs tend to be conservative in stressful conditions. However, there is limited understanding of how belowground traits respond. Plants may have similar strategies above and belowground, but an intriguing possibility is that there is a trade-off between above and belowground traits of communities to both ensure efficient resource-use and limit niche overlap along the gradient. To test this, we asked whether the response of above and belowground traits of communities is coordinated or not along a stress gradient in Mediterranean sand dune communities. We analyzed 80 vegetation plots in Central Italy to test for coordinated vs independent patterns in above vs belowground plant traits using community weighted mean and standardized effect size of functional richness. Our results show that plant communities close to the sea, which experience high stress, were characterized by high convergence towards aboveground resource conservation and conservative water-use strategies but belowground resource acquisition, consistent with a strong effect of habitat filtering and an above-belowground tradeoff favoring adaptation to harsh and dry conditions. At the opposite end of the gradient with lower stress, plants exhibited higher trait diversity for both above and belowground traits, but overall a dominance of aboveground fast resource acquisition and generally acquisitive water-use strategies, combined with conservative fine-root traits. This suggests that fast growth rate aboveground was compensated by more conservative fine-root strategies, but processes such as competition limited niche overlap overall. Our findings provide new insights into the relationship between functional traits and environmental gradients in plant communities, shedding light on the trade-offs between the above and belowground dimensions.</span></p>
Fire severity as a key determinant of aboveground and belowground biological community recovery in managed even-aged boreal forests
Open the record for dataset details and reuse information.
Above and belowground functional community variation in sandy dunes
Open the record for dataset details and reuse information.
Interactions between belowground traits and rhizosheath fungal and bacterial communities for phosphorus acquisition
Open the record for dataset details and reuse information.
Data from: Belowground community turnover accelerates the decomposition of standing dead wood
Open the record for dataset details and reuse information.
Links between boreal forest management, soil fungal communities and belowground carbon sequestration
Open the record for dataset details and reuse information.
Belowground fungal community presence in savanna and oak forest: Causes of change in ectomycorrhizal communities
This experiment is designed to examine whether oak savanna supports a unique community of ectomycorrhizal fungi, a higher diversity of ectomycorrhizal fungi or a greater proportional abundance of ascomycete fungi compared with adjacent areas where the absence of fire has resulted in oak savanna conversion to oak forest.
Plant belowground biomass:Effects of Long Term Fertilization and Oak Canopy Cover on Plant Communities and Ecosystem Processes
In 1996 E142 was established in field D on top of the E004 macroplots. E004 was conducted in fields A, B, C and D by Dave Tilman. The purpose of E004 was to see what effect NH4NO3 addition has on large areas over a longer period of time with exposure to naturally-occurring levels of herbivory. The nutrient addition treatments in E004, E142 plots have been applied annually since 1982. These experiments, along with others at Cedar Creek, examine the community and ecosystem consequences of chronic nutrient loading.
Plant belowground biomass carbon and nitrogen:Effects of Long Term Fertilization and Oak Canopy Cover on Plant Communities and Ecosystem Processes
In 1996 E142 was established in field D on top of the E004 macroplots. E004 was conducted in fields A, B, C and D by Dave Tilman. The purpose of E004 was to see what effect NH4NO3 addition has on large areas over a longer period of time with exposure to naturally-occurring levels of herbivory. The nutrient addition treatments in E004, E142 plots have been applied annually since 1982. These experiments, along with others at Cedar Creek, examine the community and ecosystem consequences of chronic nutrient loading.
Data from: Above-belowground linkages of functionally dissimilar plant communities and soil properties in a grassland experiment
<p>Changes in plant community composition can have long-lasting consequences for ecosystem functioning. However, how the duration of plant growth of functionally distinct grassland plant communities influences abiotic and biotic soil properties and thus ecosystem functions is poorly known. In a field experiment, we established identical experimental subplots in two successive years comprising of fast- or slow-growing grass and forb community mixtures with different forb:grass ratios. After one and two years of plant growth, we measured above- and belowground biomass, soil abiotic characteristics (pH, organic matter, soil nutrients), soil microbial properties (respiration, biomass, community composition), and nematode abundance. Fast- and slow-growing plant communities did not differ in above- and belowground biomass. However, fast-and slow-growing plant communities created distinct soil bacterial communities, whereas soil fungal communities differed most in 100% forb communities compared to other forb:grass ratio mixtures. Moreover, soil nitrate availability was higher after two years of plant growth, whereas the opposite was true for soil ammonium concentrations. Furthermore, total nematodes and especially bacterial-feeding nematodes were more abundant after two years of plant growth. Our results show that plant community composition is a driving factor in soil microbial community assembly and that the duration of plant growth plays a crucial role in the establishment of plant community and functional group composition effects on abiotic and biotic soil ecosystem functioning under natural field conditions.</p>
Data from: Belowground-mediated and phase-dependent processes drive nitrogen-evoked community changes in grasslands
<ol> <li>Enhanced deposition of atmospheric nitrogen (N) leads to loss of plant diversity in grassland ecosystems. Numerous theories have provided potential explanations for the negative effects of N enrichment on plant diversity. However, the relative importance of each mechanism and the time scales of responses for the different functional groups remain unclear.</li> <li>We investigated the temporal responses of plant community in a temperate steppe to N enrichment by linking aboveground to belowground processes using a series of field N-addition and greenhouse experiments.</li> <li>The N enrichment-induced declines in plant diversity of grasslands were phase-based, functional group-dependent, and driven by three belowground processes. The rapid accumulation of NH<sub>4</sub><sup>+</sup>-N by N addition inhibited photosynthetic rates of broad-leaf-non-rhizomatous forbs, contributing to loss of these N-sensitive species during early phase of N enrichment (≤3 years). The N-induced changes in this phase were independent of soil pH as evidenced by results from application lime to mitigate N-evoked soil acidification. With progression of N addition, manganese (Mn) toxicity to narrow-leaf-non-rhizomatous forbs due to soil acidification-induced Mn<sup>2+</sup> mobilization in soil accounted for their loss in the second phase of N enrichment (~ 4-9 years). When N addition proceeded longer than ~10 years, N enrichment stimulated belowground meristem differentiation and rhizome growth of the rhizomatous species, leading to the dominance by rhizomatous sedges/grasses in the community at later phase of N enrichment.</li> </ol> <p>Synthesis: The hierarchical mechanisms not only provide a comprehensive explanation for the N enrichment-induced diversity decline in grasslands, but can also facilitate us to understand the differential sensitivities of ecosystems to chronic N enrichment, and predict future ecosystem dynamics.</p>
Data from: Belowground community responses to fire: meta-analysis reveals contrasting responses of soil microorganisms and mesofauna
Global fire regimes are shifting due to climate and land use changes. Understanding the responses of belowground communities to fire is key to predicting changes in the ecosystem processes they regulate. We conducted a comprehensive meta-analysis of 1634 observations from 131 empirical studies to investigate the effect of fire on soil microorganisms and mesofauna. Fire had a strong negative effect on soil biota biomass, abundance, richness, evenness, and diversity. Fire reduced microorganism biomass and abundance by up to 96%. Bacteria were more resistant to fire than fungi. Fire reduced nematode abundance by 88% but had no significant effect on soil arthropods. Fire reduced richness, evenness and diversity of soil microorganisms and mesofauna by up to 99%. We found little evidence of temporal trends towards recovery within 10 years post-disturbance suggesting little resilience of the soil community to fire. Interactions between biome, fire type, and depth explained few of these negative trends. Future research at the intersection of fire ecology and soil biology should aim to integrate soil community structure with the ecosystem processes they mediate under changing global fire regimes.
Data from: Crop rotational diversity enhances belowground communities and functions in an agroecosystem
Biodiversity loss, an important consequence of agricultural intensification, can lead to reductions in agroecosystem functions and services. Increasing crop diversity through rotation may alleviate these negative consequences by restoring positive aboveground–belowground interactions. Positive impacts of aboveground biodiversity on belowground communities and processes have primarily been observed in natural systems. Here, we test for the effects of increased diversity in an agroecosystem, where plant diversity is increased over time through crop rotation. As crop diversity increased from one to five species, distinct soil microbial communities were related to increases in soil aggregation, organic carbon, total nitrogen, microbial activity and decreases in the carbon-to-nitrogen acquiring enzyme activity ratio. This study indicates positive biodiversity–function relationships in agroecosystems, driven by interactions between rotational and microbial diversity. By increasing the quantity, quality and chemical diversity of residues, high diversity rotations can sustain soil biological communities, with positive effects on soil organic matter and soil fertility.
Data from: Land-use type and intensity differentially filter traits in above- and belowground arthropod communities
1. Along with the global decline of species richness goes a loss of ecological traits. Associated biotic homogenization of animal communities and narrowing of trait diversity threaten ecosystem functioning and human well-being. High management intensity is regarded as an important ecological filter, eliminating species that lack suitable adaptations. Belowground arthropods are assumed to be less sensitive to such effects than aboveground arthropods. 2. Here, we compared the impact of management intensity between (grassland vs. forest) and within land-use types (local management intensity) on the trait diversity and composition in below- and aboveground arthropod communities. 3. We used data on 722 arthropod species living above ground (Auchenorrhyncha and Heteroptera), primarily in soil (Chilopoda and Oribatida) or at the interface (Araneae and Carabidae). 4. Our results show that trait diversity of arthropod communities is not primarily reduced by intense local land use, but is rather affected by differences between land-use types. Communities of Auchenorrhyncha and Chilopoda had significantly lower trait diversity in grassland habitats as compared to forests. Carabidae showed the opposite pattern with higher trait diversity in grasslands. Grasslands had a lower proportion of large Auchenorrhyncha and Carabidae individuals, whereas Chilopoda and Heteroptera individuals were larger in grasslands. Body size decreased with land-use intensity across taxa, but only in grasslands. The proportion of individuals with low mobility declined with land-use intensity in Araneae and Auchenorrhyncha, but increased in Chilopoda and grassland Heteroptera. The proportion of carnivorous individuals increased with land-use intensity in Heteroptera in forests and in Oribatida and Carabidae in grasslands. 5. Our results suggest that gradients in management intensity across land-use types will not generally reduce trait diversity in multiple taxa, but will exert strong trait filtering within individual taxa. The observed patterns for trait filtering in individual taxa are not related to major classifications into above- and belowground species. Instead, ecologically different taxa resembled each other in their trait diversity and compositional responses to land-use differences. These previously undescribed patterns offer an opportunity to develop management strategies for the conservation of trait diversity across taxonomic groups in permanent grassland and forest habitats.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.