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ShareScore release 0.9.0
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4 results for “binding site comparison”
DeeplyTough: Learning Structural Comparison of Protein Binding Sites (pre-processed datasets)
<p>This deposit includes the processed versions of TOUGH-M1 (Govindaraj and Brylinski, 2018), Vertex (Chen et al., 2016), and ProSPECCTs (Ehrt et al., 2018) datasets as used in our JCIM paper (Simonovsky and Meyers, 2020) - https://pubs.acs.org/doi/abs/10.1021/acs.jcim.9b00554. Specifically, this may include PDB files with associated pockets, pre-processed HTMD features, or UniProt accession number and cluster mappings. Note that these datasets have to be combined with the original dataset files released by the respective authors.</p> <p>Liability: We do not represent and/or warrant that no third party rights exist which might prevent the use of the database or that no third party rights would be infringed by said use.</p>
Cross-species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites
GEO Series GSE27450. Mus musculus; Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
GEO Series GSE66900. Danio rerio; Strongylocentrotus purpuratus; Mus musculus. 63 samples. Type: Other.
E2F in vivo binding specificity: comparison of consensus vs. non-consensus binding sites
GEO Series GSE12126. Homo sapiens; Mus musculus. 22 samples. Type: Genome binding/occupancy profiling by genome tiling array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.