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ShareScore release 0.9.0
Dataset results
5 results for “bioformats”
Example ND2 file for testing issues with bioformats metadata extraction
<p>This upload is to assist diagnosis of timestamp issues in new version of Nikon Elements ND2 file formats </p>
Example dataset for Bioformats issue with Nikon ND2 file format
<p>This is an example dataset to help troubleshoot issues with opening ND2 files in the current version of Fiji (latest Bioformats installed). The dataset opens fine in NIS Elements including the free Viewer version. There should be 4 separate images/channels. Three of the images are fluorescence (DAPI, GFP, Texas Red) and the last is DIC (transmitted light). They were taken with a Nikon DS-Ri2 colour camera. However, the data set opens as a 4 channel set where the first image is not recognisable and the subsequent 3 have vertical stripes (missing information?) but look a bit like the DIC image.</p>
SDT Test data for bioformats recorded with B&H SPCM64 version 9.90
Open the record for dataset details and reuse information.
TillVision data_bioformats
<p>Files used for fiji</p>
Bioformats bug: Wrong dimensions for some images when reading olympus oir files
<p>Files for the issue reported here: https://forum.image.sc/t/wrong-dimensions-for-some-images-when-reading-olympus-oir-files/65533/2?u=filio</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.