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419 results for “capture data”
MS and NMR data of in situ Captured Marine Exometabolites
<p>This folder contains the raw data pertaining to the article <i><strong>In Situ</strong></i> <strong>Capture and Real Time Enrichment of Marine Chemical Diversity </strong></p><p><a href="https://doi.org/10.1021/acscentsci.3c00661">https://doi.org/10.1021/acscentsci.3c00661</a></p><p>Data are organized in folders corresponding to each figure. Briefly, this folder contains the raw mass spectrometry (MS) data, the cytoscape files of the full molecular network (Fig3), the xcel spreadsheets of annotated MS spectra related to each investigated specialized exometabolites from the Mediterranean sponges <i>Aplysina cavernicola </i>(AC, Fig4), <i>Spongia officinalis </i>(SO, Fig5)<i>, </i>and <i>Agelas oroides </i>(AO, Fig6)<i>, </i>the raw 1H NMR data from each sponge exometabolite (EM) extract with their corresponding crude extract (CR).</p><ul><li>All MS2 data were acquired on a Bruker Impact II qTOF (ESI positive, collision energy 20-40eV) also deposited here : MSV000091465</li><li>SIRIUS software and CANOPUS were used to further annotate the chemodiversity of captured marine EMs</li><li>All NMR data were acquired on a BRUKER avance II+ instrument (600 MHz, cryoprobe) in CD<i>3</i>OD</li></ul><p>-------------------------</p><p><strong>References related to in silico MS annotation tools:</strong></p><ul><li>Kai Dührkop, Louis-Félix Nothias, Markus Fleischauer, Raphael Reher, Marcus Ludwig, Martin A. Hoffmann, Daniel Petras, William H. Gerwick, Juho Rousu, Pieter C. Dorrestein and Sebastian Böcker <i>Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra</i>. Nature Biotechnology, 2020. https://doi.org/10.1038/s41587-020-0740-8</li><li>Yannick Djoumbou Feunang, Roman Eisner, Craig Knox, Leonid Chepelev, Janna Hastings, Gareth Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart <i>ClassyFire: automated chemical classification with a comprehensive, computable taxonomy </i>J Cheminf, 8, 2016. https://doi.org/10.1186/s13321-016-0174-y</li><li>Kim, Hyun Woo and Wang, Mingxun and Leber, Christopher A. and Nothias, Louis-Félix and Reher, Raphael and Kang, Kyo Bin and van der Hooft, Justin J. J. and Dorrestein, Pieter C. and Gerwick, William H. and Cottrell, Garrison W. NPClassifier:<i> A Deep Neural Network-Based Structural Classification Tool for Natural Products. </i>Journal of Natural Products, 84, 2021. https://doi.org/10.1021/acs.jnatprod.1c00399</li></ul>
IMU data captured unobtrusively and in-the-wild by Parkinson's disease patients and healthy controls
<p><strong>DATASET</strong></p> <p>The dataset contains IMU signals captured in-the-wild via the accelerometer sensor embedded in modern smartphones, for the purpose of detecting tremorous episodes, related to Parkinson's Disease (PD). A group of 31 PD patients and 14 Healthy controls contributed accelerometer data using their personal smartphones, for a period spanning many months.Tri-axial acceleration values were recorded automatically whenevera phone call was realized. The recording lasted for 75 seconds at the most. Each phone call thus resulted in one recorded accelerometer signal, also referred to as session. Each subject contributed a different amount of sessions depending on the number of phone calls they realized during the data collection period as well as their participation time (they were free to drop-out at any time). A detailed description of the capturing process as well as analysis results, can be found in the related research article.</p> <p>The data is presented as a list of python dictionaries, stored in a pickle file. Each dictionary in the list, corresponds to one subject and containes the following fields:</p> <p>1. subject_id: scalar<br> A numerical value that uniquely identifies the subject.</p> <p>2. subject_sessions: list of numpy.array<br> A list of numpy arrays of shape (N, 4) that contains the tri-axial accelerometer sessions that the subject contributed. N denotes the total length of the session in samples (which varies from session to session) Column 0 of the array contains the timestamps of the accelerometer samples. Columns 1-3 contain the acceleration values across the x,y,z directions.</p> <p>3. session_datetimes: list of datetime objects <br> A list of datetime objects that denote the capturing date and time of the corresponding entries in the subject_sessions field.</p> <p>4. annotation: dict<br> A dictionary containing the following tremor-related annotation values:<br> * updrs16: scalar int<br> The value related to tremor as described in item 16 of the part II of the MDS-UPDRS scale, as reported by the subject.</p> <p>* updrs20_right: scalar int in range [0, 4]<br> The value related to rest tremor in the right hand as described in item 20 of the part III of the MDS-UPDRS scale, as reported by the attending neurologist.</p> <p>* updrs20_left: scalar int in range [0, 4]<br> Same as above but for left hand.</p> <p>* updrs21_right: scalar int in range [0, 4]<br> The value related to action/postural tremor in the right hand as described in item 21 of the part III of the MDS-UPDRS scale, as reported by the attending neurologist.</p> <p>* updrs21_left: scalar int in range [0, 4]<br> Same as above but for left hand.</p> <p>* sp_expert: scalar int in range [0, 1]<br> A binary tremor annotation created by a group of signal processing experts, upon visually examining the contributed signals in both time and frequency domain and taking into consideration the UDPRS scores of each subject. This was necessary due to the intermittent nature of tremor, as well as a number of considerations related to the in-the-wild nature of the data capturing process. For more details, we refer the reader to the dataset description in the related research article.<br> A '1' value indicates that the subject has tremor.<br> A '0' value indicates that the subject doesn't have tremor.</p> <p>* pd_status: scalar int in range [0, 1]<br> A '1' value indicates that the subject is a PD patient.<br> A '0' value indicates that the subject is a Healthy Control</p> <p>Note: Each annotation value refers to the subject as a whole, and not in any one session.<br> </p> <p><strong>ETHICS & FUNDING</strong></p> <p>The study during which the present dataset was collected is a multi-center study approved in each country available (for more info visit: <a href="http://www.i-prognosis.eu/?page_id=3606">http://www.i-prognosis.eu/?page_id=3606</a>). Informed consent, including permission for third-party access to pseudo-anonymised data, was obtained from all subjects prior to their engagement with the study. The work has received funding from the European Union's Horizon 2020 research and innovation programme under Grant Agreement No 690494 - i-PROGNOSIS: Intelligent Parkinson early detection guiding novel supportive interventions (<a href="http://www.i-prognosis.eu/">i-prognosis.eu</a>).</p> <p> </p> <p><strong>CORRESPONDANCE</strong></p> <p>Any inquiries regarding this dataset should be adressed to:</p> <p>Mr. Alexandros Papadopoulos (Electrical & Computer Engineer, PhD candidate)</p> <p>Multimedia Understanding Groupmug<br> Department of Electrical & Computer Engineering<br> Aristotle University of Thessaloniki<br> University Campus, Building C, 3rd floor<br> Thessaloniki, Greece, GR54124</p> <p>Tel: +30 2310 996359, 996365 <br> Fax: +30 2310 996398<br> E-mail: alpapado@mug.ee.auth.gr</p> <p> </p> <p><strong>LICENSE</strong></p> <p>This is an open access dataset, licensed under Creative Commons Attribution 4.0 International (<a href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</a>).</p> <p> </p> <p><strong>WARRANTY</strong></p> <p>This dataset comes without any warranty. Administrators of this dataset can not be held accountable for any damage (physical, financial or otherwise) caused by the use of this dataset. </p>
Underlying data for: "Capturing the mechanosensitivity of cell proliferation in models of epithelium"
<p>For our publication "Capturing the mechanosensitivity of cell proliferation in models of epithelium" (available as a preprint at <a title="BioRXiv Link" href="https://doi.org/10.1101/2023.01.31.526438" target="_blank" rel="noopener">DOI: 10.1101/2023.01.31.526438 )</a> we here provide the raw data for the included plots and the code used to generate the Delayed Fisher Kolmogorov (DFK) data referenced in the main publication</p> <p>The archive '<em>underlying_data.zip</em>' contains raw data underlying the plots in the publication. <br>The archive '<em>puls_proliferation_rate-1.0.zip</em>' contains the code for generating DFK trajectories referenced in the publication and its SI. <br>The archive '<em>ddesolver-1.0.zip</em>' contains the python code for solving delayed differential equations used by the puls_proliferation_rate project. It is included to ensure completeness and reproducibility of the simulations. </p>
Capture data for sharks caught in standardized drumline fishing in Shark Bay, Western Australia, with accompanying abiotic data, from February 2008 to July 2014.
This dataset provides data on large sharks captured during standardized drumline fishing and is used to monitor shark catch rates, sex ratios and size distributions in Shark Bay.
Capture data for sharks caught in standardized drumline fishing in Shark Bay, Western Australia, with accompanying abiotic data, from January 2012 to April 2014.
This file provides data on standardized drumline fishing effort (gear deployment data) targeting large elasmobranchs in Shark Bay, Western Australia between 2012 and 2014
Rodent capture data across grassland-shrubland ecotones at 3 sites in the Jornada Basin, 2004-ongoing
The objective of this study is to investigate how pulses of precipitation translate into pulses of plant aboveground net primary productivity (ANPP) and how the small mammal community responds to such changes in relation to shrub gradients in northern Chihuahuan Desert landscapes. This dataset consists of the first capture of individuals each year that can be used to calculate an index of relative abundance of rodents (i.e., number of unique individuals captured by species). The first-capture data are derived from mark-recapture sampling during 4 consecutive night trapping events held annually in three habitat vegetation zones (grassland, ecotone, and mesquite shrubland) at three grassland-to-shrubland ecotone sites in the Jornada Basin, Dona Ana County, New Mexico, USA. Variables include rodent species, sex, reproductive status, weight, and maturity status. Also available are measures of relative abundance and biomass of rodents in data package knb-lter-jrn.210262010. This is an ongoing dataset.
Suplementary data, results and scripts: "Reconstruction of Cell-specific Models Capturing the Influence of Metabolism on DNA methylation in Cancer"
<p>This repository contains supplementary data, models and scripts associated with "Reconstruction of Cell-specific Models Capturing the Influence of Metabolism on DNA methylation in Cancer".</p><p>Folders content:</p><p>'data_results_matlabscripts': data, result files and scripts (original python scripts and adapted MATLAB scripts)</p><p>'supplementary_figures': supplementary figures</p><p>'supplementary_tables': supplementary tables</p>
Kuopio gait dataset: motion capture, inertial measurement and video-based sagittal-plane keypoint data from walking trials
<p>This dataset contains motion capture (3D marker trajectories, ground reaction forces and moments), inertial measurement unit (wearable Movella Xsens MTw Awinda sensors on the pelvis, both thighs, both shanks, and both feet), and sagittal-plane video (anatomical keypoints identified with the OpenPose human pose estimation algorithm) data.<br>The data is from 51 willing participants and collected in the HUMEA laboratory in the University of Eastern Finland, Kuopio, Finland, between 2022 and 2023. All trials were conducted barefoot.</p> <p>The file structure contains an Excel file containing information of the participants, data folders under each subject (numbered 01 to 51), and a MATLAB script.</p> <p>The Excel file has the following data for the participants:</p> <ul> <li><strong>ID</strong>: ID of the participants from 1 to 51</li> <li><strong>Age</strong>: age of the participant in years</li> <li><strong>Gender</strong>: biological sex as M for male, F for female</li> <li><strong>Leg</strong>: the participant's dominant leg, identified by asking which foot the participant would use to kick a football; R for right, L for left</li> <li><strong>Height</strong>: height of the participant in centimeters</li> <li><strong>Invalid_trials</strong>: list of invalid trials in the motion capture data (MOCAP) data, usually classified as such because the participant did not properly step on the middle force plate</li> <li><strong>IAD</strong>: inter-asis distance in millimeters, the distance between palpated left and right anterior superior iliac spine, measured with a caliper</li> <li><strong>Left_knee_width</strong>: width of the left knee from medial epicondyle to lateral epicondyle in millimeters, palpated and measured with a caliper</li> <li><strong>Right_knee_width</strong>: same as above for the right knee</li> <li><strong>Left_ankle width</strong>: width of the left ankle from medial malleolus to lateral malleolus in millimeters, palpated and measured with a caliper</li> <li><strong>Right_ankle_width</strong>: same as above for the right ankle</li> <li><strong>Left_thigh_length</strong>: the distance between the greater trochanter of the left femur and the lateral epicondyle of the left femur in millimeters, palpated and measured with a measuring tape</li> <li><strong>Right_thigh_length</strong>: same as above for the right thigh</li> <li><strong>Left_shank_length</strong>: the distance between the medial epicondyle of the femur and the medial malleolus of the tibia in millimeters, palpated and measured with a measuring tape</li> <li><strong>Right_shank_length</strong>: same as above for the right shank</li> <li><strong>Mass</strong>: mass in kilograms, measured on a force plate just before the walking measurements</li> <li><strong>ICD</strong>: inter-condylar distance of the knee of the dominant leg, measured from low-field MRI</li> <li><strong>Left_knee_width_mocap</strong>: distance between reflective MOCAP markers on the medial and lateral epicondyles of the knee in millimeters, measured from a static standing trial; -1 for missing (subject did not have those markers)</li> <li><strong>Right_knee_width_mocap</strong>: same as above for the right knee</li> </ul> <p>The folders under each subject (folders numbered 01 to 51) are as follows:</p> <ul> <li><strong>imu</strong>: "Raw" inertial measurement unit (IMU) data files that can be read with Xsens Device API (included in Xsens MT Manager 4.6, which may be unavailable these days, not sure). You won't need this if you use the data in the imu_extracted folder.</li> <li><strong>imu_extracted</strong>: IMU data extracted from those data files using the Xsens Device API, so you don't have to. <ul> <li>The data is saved as MATLAB structs where the fields are named as a sensor ID (e.g., "B42D48"). The sensor IDs and their corresponding IMU locations are as follows: <ul> <li>pelvis IMU: B42DA3</li> <li>right femur IMU: B42DA2</li> <li>left femur IMU: B42D4D</li> <li>right tibia IMU: B42DAE</li> <li>left tibia IMU: B42D53</li> <li>right foot IMU: B42D48</li> <li>left foot IMU: B42D51 (except for subjects 01 and 02, where left foot IMU has the ID B42D4E)</li> </ul> </li> <li>Some of the data are just zeros as they couldn't be read from these sensors, but under each sensor, the fields "calibratedAcceleration", "freeAcceleration", "time", "rotationMatrix", and "quaternion" contain usable data. <ul> <li>time: Contains time stamps of the measurement at each frame recorded at 100 Hz, so if you remove the first value from all values in the time vector and divide the result by 100, you will get the time in seconds from the beginning of the walking trial.</li> <li>calibratedAcceleration and freeAcceleration: Contain triaxial acceleration data from the accelerometers of the IMU. freeAcceleration is just calibratedAcceleration without the effect of Earth's gravitational acceleration.</li> <li>rotationMatrix: Orientations of the IMU as rotation matrices.</li> <li>quaternion: Orientations of the IMU as quaternions.</li> </ul> </li> </ul> </li> <li><strong>openpose</strong>: Trajectories of the keypoints identified from sagittal plane video frames, saved as json files. <ul> <li>The keypoints are from the BODY_25 model of OpenPose (https://cmu-perceptual-computing-lab.github.io/openpose/web/html/doc/md_doc_02_output.html).</li> <li>Each frame in the video has its own json file.</li> <li>You can use the function in the script "OpenPose_to_keypoint_table.m" in the root folder to read the keypoint trajectories and confidences of all frames in a walking trial into MATLAB tables. The function takes as argument the path to the folder containing the json files of the walking trial.</li> </ul> </li> <li>Note that some subjects (11, 14, 37, 49) do not have keypoint and IMU data.</li> </ul> <p>The folders under each subject are divided into three ZIP archives with 17 subjects each.</p> <p>The script "OpenPose_to_keypoint_table.m" is a MATLAB script for extracting keypoint trajectories and confidences from JSON files into tables in MATLAB.</p> <p><br><strong>Publication in Data in Brief</strong>: <a href="https://doi.org/10.1016/j.dib.2024.110841" target="_blank" rel="noopener">https://doi.org/10.1016/j.dib.2024.110841</a></p> <p><br><strong>Contact</strong>: Jere Lavikainen, jere.lavikainen@uef.fi</p>
Supplementary data to `Do science maps from open access literature capture the overall topic structure of an academic field?`
<p>The dataset contains the 8,528 academic articles records related to Sustainable Food research sourced with the query `TS=("sustainab*" NEAR/2 "food*")` .</p> <p>They are the records present in the largest component of the citation network, as specified in the manuscript. </p> <p>The dataset was sourced from OpenAlex based on the original data used in the manuscript and it is composed of the following columns:</p> <table> <tbody> <tr> <td><em><strong>Column</strong></em></td> <td><em><strong>Description</strong></em></td> </tr> <tr> <td>Id</td> <td>OpenAlex ID</td> </tr> <tr> <td>DOI</td> <td>Document Object Identifier</td> </tr> <tr> <td>display_name</td> <td>The article title</td> </tr> <tr> <td>publication_year</td> <td>The publication year of the article</td> </tr> <tr> <td>open_access</td> <td>An object with details of the open access status of the article</td> </tr> </tbody> </table> <p>We choose the `.rdata` format for easy loading in R. Use the function `load()` to add the data frame to the enviroment. </p>
Time Series data from wearable sensors to capture the onset of Fatigue in Runners
<p>The data captured came from mounting a single Shimmer3 IMU on the lumbar of 19 recreational runners. The participants were all regular runners and injury free. The study protocol was reviewed and approved by the human research ethics committee at University College Dublin.<br><br>The data was collected in three segments; in the first, the participant completed a 400m run at a comfortable pace; the second segment consisted of a beep test which acted as the fatiguing protocol for this study; and the last segment where the runner was required to complete the 400m run at their comfortable pace, this time in their fatigued state. The beep test requires the runner to continuously run between two points 20m apart following an audio which produces `beeps' indicating when the person should begin running from one end to the other. The test eventually requires the runner to increase their pace as the interval between the `beeps' reduces as the test progresses. The fatiguing protocol ends when the runner is unable to keep up the increase in pace. The runs were all done on an outdoor running track. The sensor captured acceleration, angular velocity and magnetometer data throughout the three stages of the trials at a sampling rate of 256Hz. The data included here consists of the raw readings from the sensors across the three phases of the run. The data is saved seperately as 'F' for Fatigued, 'NF' for Not Fatigued, and 'BeepTest' for the data collected during the fatiguing process.</p> <p>For the processed and labelled fatigue and non fatigue data, see:</p> <p>https://zenodo.org/records/7997851</p> <p>Kindly cite one of the following papers when using this data:</p> <p>B. Kathirgamanathan, B. Caulfield and P. Cunningham, "Towards Globalised Models for Exercise Classification using Inertial Measurement Units," 2023 IEEE 19th International Conference on Body Sensor Networks (BSN), Boston, MA, USA, 2023, pp. 1–4, doi: 10.1109/BSN58485.2023.10331612</p> <p>B. Kathirgamanathan, T. Nguyen, G. Ifrim, B. Caulfield, P. Cunningham. Explaining Fatigue in Runners using Time Series Analysis on Wearable Sensor Data, XKDD 2023: 5th International Workshop on eXplainable Knowledge Discovery in Data Mining, ECML PKDD, 2023, <a href="http://xkdd2023.isti.cnr.it/papers/223.pdf">http://xkdd2023.isti.cnr.it/papers/223.pdf</a></p>
Data for a publication "Amino-Modified ZIF-8 for Enhanced CO2 Capture: Synthesis, Characterization and Performance Evaluation"
<p>Data for a publication "Amino-Modified ZIF-8 for Enhanced CO2 Capture: Synthesis, Characterization and Performance Evaluation".</p> <p><strong>Versions of dataset:</strong></p> <p><strong><span>V1: </span></strong><span>First dataset regarding the data used in the article.</span></p> <p><strong><span>V2:</span></strong><span> The dataset </span><span>was newly reorganized</span><span>, containing the </span><span>data,</span><span> that </span><span>were used</span><span> for the published article. </span><span>More information can be found</span><span> in the README file.</span></p> <p><strong>Article abstract</strong></p> <p>The urgent need for sustainable and innovative approaches to mitigate the increasing levels of atmospheric CO<sub>2</sub> necessitates the development of efficient methods for its removal. In this study, we focus on the new, innovative approach for synthesis and functionalization of metal-organic framework (MOF) ZIF-8 in one step at room temperature to enhance its capacity for CO<sub>2</sub> capture. Specifically, we investigated the impact of four amino-compounds, namely tetraethylenepentamine (TEPA), hexadecylamine (HDA), <a title="Learn more about ethanolamine from ScienceDirect's AI-generated Topic Pages" href="https://www.sciencedirect.com/topics/chemical-engineering/ethanolamine">ethanolamine</a> (ELA), and cyclopropylamine (CPA), on the <a title="Learn more about chemical structure from ScienceDirect's AI-generated Topic Pages" href="https://www.sciencedirect.com/topics/materials-science/structure-composition">chemical structure</a>, size, surface area and porosity, and CO<sub>2</sub> capturing of ZIF-8 powder. By varying concentrations of the amino-compounds, we examined their influence on the ZIF-8 properties. Our findings demonstrate that each amino-compound and its respective concentration exhibit distinct effects on the characteristics of ZIF-8. Notably, the ZIF-8 sample functionalized with the highest presented concentration of TEPA exhibited significant improvement in CO<sub>2</sub> trapping efficiency, with a 33.3% enhancement. Moreover, least concentrated samples with added HDA or CPA demonstrated notable improvements with enhancements of 46.6% and 18.6%, respectively. These results highlight the potential of simple synthesis and functionalization techniques for MOFs in enhancing their CO<sub>2</sub> capture capabilities. The findings from this study offer new opportunities for the development of strategies to mitigate CO<sub>2</sub> emissions using MOFs.</p>
Precomputed data accompanying the paper "Reduced Data-Driven Turbulence Closure for Capturing Long-Term Statistics"
<p>Together with the python code in <a href="https://github.com/rik-stra/tau_orthogonal_method_for_2D_turbulence" target="_blank" rel="noopener">https://github.com/rik-stra/tau_orthogonal_method_for_2D_turbulence</a>, this dataset lets the user interact with and reproduce the results in the paper "Reduced Data-Driven Turbulence Closure for Capturing Long-Term Statistics".</p> <p> All data in this dataset is computed with the provided code.</p>
Hand gesture dataset based on sEMG data captured from the Technaid human-robot interaction system
<p>Two files with a dataset of five different/independent hand gestures are provided. The data were generated in a sEMG system with two bracelets (eight sEMG sensors and six sEMG sensors) worn in the right forearm of a human. The Technaid human-robot interaction system was used to captured the data. The file "datasetForSegmentation.mat" was used to train a classifier whose purpose is the execution of Segmentation process. On the other hand, the file "datasetForRecognition.mat" was used to train a classifier whose purpose is the execution of gesture Recognition process.</p> <p> </p>
Arm gesture dataset based on IMU data captured from the Technaid human-robot interaction system
<p>Two files with a dataset of ten different/independent hand gestures are provided (seven static gestures and three dynamic gestures). The data were generated in a IMU system with five sensors worn in the right forearm, right arm, chest, left arm and left forearm of a human. The Technaid human-robot interaction system was used to captured the data. The file "datasetStaticGestures.mat" was used to train and test a classifier whose purpose is the recognition of static gestures. On the other hand, the file "datasetDynamicGestures.mat" was used to train and test a classifier whose purpose is the recognition of dynamic gestures. The latter file contains an extra class (gesture) which represents non-gestures.</p>
Keystroke timing and pressure data captured during touchscreen typing by early Parkinson's disease patients and healthy controls
<p><strong>DATASET</strong></p> <p>The present dataset comprises keystroke timing and pressure data that correspond to short text excerpts typed by early Parkinson’s disease (PD) patients (n=18) and healthy controls (n=15) on a common touchscreen-equipped smartphone (LG Nexus 5X with a screen of 5.2 inches in diagonal and a resolution of 1080 × 1920 pixels, running native Android 7.0). Subjects were asked to transcribe up to 11 short text excerpts, with the initial one being 200 characters-long and common for all subjects, while the rest were 40-115 characters-long, pseudorandomly drawn from the fairy tale 'The Little Prince'. Data were recorded using a custom Android Operating System input method (keyboard), developed for the purposes of the study. Additional details on exepriment design, material and methods can be found in the related research article mentioned below. </p> <p>Data consist of sequences of raw press and release timestamps (in milliseconds), as well as of values of normalized pressure (0.000-1.000) applied to initiate keystrokes, corresponding to the consecutive keys tapped during the transcription of each text excerpt. Data included in the 'Data' folder are organised in sub-folders per subject. Each sub-folder contains a number of .txt files with each one corresponding to a text excerpt typed by the particular subject. Files are named using the format S##_TEX##.txt, with S## denoting the subject's coded ID and TEX## the serial number of the transcribed text excerpt. For all subjects, file S##_TEX01.txt corresponds to the initial and common 200 characters-long text excerpt. Each file contains the sequences of raw key press/release timestamps (Tp#, Tp#) and normalized pressure (NP#), applied to initiate each keystroke, in the following format:</p> <p>{<br> Press, Tp1, Release, Tr1, NP1<br> Press, Tp2, Release, Tr2, NP2<br> .<br> .<br> . <br> Press, Tpn, Release, Trn, NPn<br> }</p> <p>where 1,2,...,n denote the serial index of the key tapped during typing.</p> <p><em>Note:</em> Out of 33 subjects, 32 managed to transcribe 8 to 11 text excerpts, while the remaining one (Subject ID: 16) typed only 5. Ten subjects (Subject IDs: 6, 14, 16, 17, 25, 27, 29, 31, 32, 33) did not manage to type the initial 200 characters-long excerpt in its entirety.</p> <p>The dataset also includes a record, in Microsoft Excel format (Demographics_Clinical_Characteristics.xlsx), of the demographic and clinical characteristics (with respect to PD) of subjects. Entries of the Excel file are linked to subjects' sub-folders and individual keystroke data text files via the coded ID of the subject.</p> <p>Demographic characteristics included:</p> <p>Age; Gender; Education level; Years of smartphone usage; Dominant hand<sup>1</sup></p> <p>Clinical characteristics included:</p> <p>Group (PD, Control); Years from diagnosis; Hoehn-Yahr disease stage; Most affected side<sup>2</sup>; Levodopa Equivalent Daily Dose; UPDRS_III<sup>3</sup> total score; UPDRS_III Item 21 Tremor-Right hand; UPDRS_III Item 21 Tremor-Left hand; UPDRS_III Item 22 Rigidity-Right hand; UPDRS_III Item 22 Rigidity-Left hand; UPDRS_III Item 23 Finger taps-Right hand; UPDRS_III Item 23 Finger taps-Left hand; UPDRS_III Item 31 Body bradykinesia/ Hypokinesia</p> <p><sup>1</sup>Dominant hand: (Relating to handedness) the operant hand generally used for performing fine motor-skills tasks.<br> <sup>2</sup>Most affected body side by Parkinson's disease<br> <sup>3</sup>UPDRS_III: Unified Parkinson's Disease Rating Scale Part III (Motor section)</p> <p> </p> <p><strong>RELATED RESEARCH</strong></p> <p>This dataset was originally used and described in the OPEN ACCESS publication: </p> <p>[1] Iakovakis, D., Hadjidimitriou, S., Charisis, V., Bostantzopoulou, S., Katsarou, Z., & Hadjileontiadis, L. J. (2018). Touchscreen typing-pattern analysis for detecting fine motor skills decline in early-stage Parkinson’s disease. Scientific reports, 8(1), 7663. <a href="http://doi.org/10.1038/s41598-018-25999-0">https://doi.org/10.1038/s41598-018-25999-0</a> </p> <p>All documents and papers that report on research that uses this dataset will acknowledge this by citing the above publication.</p> <p> </p> <p><strong>ETHICS & FUNDING</strong></p> <p>The study during which the present dataset was collected was approved by the Aristotle University of Thessaloniki Bioethics Committee of Medical School (approval no. 359/3.4.17), Thessaloniki, Greece. Informed consent, including permission for third-party access to pseudo-anonymised data, was obtained from all subjects prior to their engagement with the study. The work has received funding from the European Union's Horizon 2020 research and innovation programme under Grant Agreement No 690494 - i-PROGNOSIS: Intelligent Parkinson early detection guiding novel supportive interventions (<a href="http://www.i-prognosis.eu">i-prognosis.eu</a>).</p> <p> </p> <p><strong>CORRESPONDANCE</strong></p> <p>Any inquiries regarding this dataset should be adressed to:</p> <p>Mr. Dimitrios Iakovakis (Electrical & Computer Engineer, PhD candidate)</p> <p>Signal Processing & Biomedical Technology Unit<br> Department of Electrical & Computer Engineering<br> Aristotle University of Thessaloniki<br> University Campus, Building D, 6th floor<br> Thessaloniki, Greece, GR54124</p> <p>Tel: +30 2310 996319<br> Fax: +30 2310 996312<br> E-mail: dimiiako12@gmail.com</p> <p> </p> <p><strong>LICENSE</strong></p> <p>This is an open access dataset, licensed under Creative Commons Attribution 4.0 International (<a href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</a>).</p> <p> </p> <p><strong>WARRANTY</strong></p> <p>This dataset comes without any warranty. Administrators of this dataset can not be held accountable for any damage (physical, financial or otherwise) caused by the use of this dataset. </p>
Motion Capture Data for Hand Motion Embodiment
<h1>Dataset</h1> <p>A dataset of human manipulation actions recorded with a motion capture system.</p> <p>A Qualisys motion capture system was used to record the data. We tracked individual finger movements as well as the position and orientation of the right hand. Some recordings contain additional markers at the back, shoulder, and elbow. The motion capture setup is explained <a href="https://dfki-ric.github.io/hand_embodiment/motion_capture_setup.html">here</a>.</p> <p>The dataset contains the original recordings of manipulation actions as well as metadata with annotations of relevant parts of the recordings (labels, start, end). Recordings are exported from the Qualisys Track Manager (QTM) as tab-separated value (TSV) files. Metadata is provided in JSON format. Related software is available at <a href="https://github.com/dfki-ric/hand_embodiment">github.com/dfki-ric/hand_embodiment</a>, which also contains code to load and use the dataset.</p> <h1>Publication</h1> <p>This dataset was introduced in the following paper:</p> <p>Alexander Fabisch, Manuela Uliano, Dennis Marschner, Melvin Laux, Johannes Brust, Marco Controzzi: "A Modular Approach to the Embodiment of Hand Motions from Human Demonstrations", Proceedings of IEEE-RAS International Conference on Humanoid Robots 2022.</p> <p>It is available from <a href="https://arxiv.org/abs/2203.02778">arxiv.org</a> as a preprint or from <a href="https://ieeexplore.ieee.org/document/10000165">IEEE</a>.</p> <p>If you use the dataset, please cite the paper as:</p> <blockquote> <p>@INPROCEEDINGS{Fabisch2022,<br> author={Fabisch, Alexander and Uliano, Manuela and Marschner, Dennis and Laux, Melvin and Brust, Johannes and Controzzi, Marco},<br> booktitle={2022 IEEE-RAS 21st International Conference on Humanoid Robots (Humanoids)}, <br> title={A Modular Approach to the Embodiment of Hand Motions from Human Demonstrations}, <br> year={2022},<br> pages={801--808},<br> doi={10.1109/Humanoids53995.2022.10000165}<br>}</p> </blockquote> <h1>Ethics Approval</h1> <p>Experimental protocols were approved by the ethics committee of the University of Bremen. Written informed consent was obtained from all participants for participation in the study and to publish this dataset.</p> <h1>Origin and Funding</h1> <p>This dataset is provided by the Robotics Innovation Center, DFKI GmbH.</p> <p>This work was supported by the European Commission under the Horizon 2020 framework program for Research and Innovation (project acronym: APRIL, project number: 870142).</p>
Satellite soil and vegetation water content data capturing main terrestrial ecosystem changes
<p>I)SUMMARY</p> <p>This repository contains a harmonized database for the study of terrestrial ecosystem changes published in [Bueso et al., 2021]. It covers the period June 2010 - July 2020 and includes the following variables, which were harmonized to a common spatial scale of 25km and monthly temporal resolution and clustered as detailed in [Bueso et al., 2021]:</p> <p>- SM: soil moisture from SMOS-IC v2<br> - VOD: vegetation optical depth from SMOS-IC v2<br> - NDVI: Normalized Vegetation Difference Index from MODIS, product MOD13Q1 v6<br> - PREC: Rainfall from PERSIANN-CDR v2.2.</p> <p>Additionally, land cover information from MODIS MCD12Q1 collection 6 for years 2011 and 2019 is provided for each cluster.</p> <p>II) CONTACT</p> <p>For questions, please e-mail Diego Bueso at diego.bueso@uv.es</p> <p>III) DATABASE</p> <p>We provide the maps of identified clusters by quantile of SM and VOD and the code to generate Figs 1 and 2 of supplementary material in [Bueso et al., 2023]. We then provide for each identified cluster .mat files containing the variables described above. Further details are in the readme.txt file</p> <p>IV) CITE</p> <p>To properly acknowledge the dataset we kindly encourage users to (1) cite the DOI as an in-text citation and/or in the data acknowledgements in any publication and (2) reference the following publication: </p> <p>D. Bueso, M. Piles, P. Ciais, J-P. Wigneron, Á. Moreno-Martínez, G. Camps-Valls, "Soil and vegetation water content identify the main terrestrial ecosystem changes", National Science Review, 2023, <a href="https://doi.org/10.1093/nsr/nwad026">https://doi.org/10.1093/nsr/nwad026</a> </p>
DeepDance: Motion capture data of improvised dance (2019)
<p><em>When using this resource, please cite Wallace, B., Nymoen, K., Martin, C.P & Tøressen, J. DeepDance: Motion capture data of improvised dance (2019) (version 2.0). Zenodo 10.5281/zenodo.5838178</em></p> <p><strong>Abstract</strong></p> <p>This dataset comprises full-body motion capture of improvised dance as well as corresponding audio files. 30 dancers were recorded individually, improvising to six different audio files. The motion was captured in units of mm at 240Hz using a Qualisys infra-red optical system. The experiment was carried out at the University of Oslo in October 2019. For each dancer, 3 performances are recorded for each musical piece, resulting in 540 1-minute motion capture files. The dataset was collected for use as training data in deep learning for motion generation. This dataset also includes MATLAB code to visualize the motion capture files.</p> <p> </p> <p><strong>Music</strong></p> <ul> <li>Skarphedinsson, M. Wallace, B. (2019). “Song a”</li> <li>Skarphedinsson, M. Wallace, B. (2019). “Song b”</li> <li>Skarphedinsson, M. Wallace, B. (2019). “Song c”</li> <li>Skarphedinsson, M. Wallace, B. (2019). “Song d”</li> <li>Skarphedinsson, M. Wallace, B. (2019). “Song f”</li> <li>LaClair, J. Bounce. Jesse LaClair, (2018) <em>Referenced here as “Song e”</em></li> </ul> <p> </p> <p><strong>Data Description</strong></p> <p>The following data types are provided:</p> <ul> <li>Motion (marker position): Recorded with Qualisys Track Manager and saved as tab-separated .tsv files.</li> <li>Stimuli: audio .wav files containing 1 minute of the tracks described above.</li> <li>MATLAB script for animating the tsv files. (requires the MoCap Toolbox)</li> </ul> <p>Note: Recordings which contained errors such as missing markers have been replaced by subject 001. </p> <p><strong>Acknowledgements</strong></p> <p>This work was partially supported by the Research Council of Norway through its Centres of Excellence scheme, project number 262762.</p> <p> </p> <p><strong>Conflicts of Interest</strong></p> <p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p> <p> </p>
Data for: Regularized sequence-context mutational trees capture variation in mutation rates across the human genome
<p>Additional data on output models from Bayer as reported in:</p> <p>Regularized sequence-context mutational trees capture variation in mutation rates across the human genome</p> <p>Adams CJ, Conery M, Auerbach BJ, Jensen ST, Mathieson I, Voight BF. BioRxiv https://doi.org/10.1101/2022.10.14.512160</p> <p>Accepted, PLoS Genetics. </p> <p>Code Available at: https://github.com/bvoightlab/Baymer</p>
Data for "Lone-pair effect on carrier capture in Cu2ZnSnS4 solar cells"
<p>Data for "Lone-pair effect on carrier capture in Cu2ZnSnS4 solar cells"</p> <p>Dataset required for the analysis for "<a href="https://pubs.rsc.org/en/content/articlelanding/2019/ta/c8ta10130b">Lone-pair effect on carrier capture in Cu2ZnSnS4 solar cells</a>". The dataset consists of:</p> <ul> <li>Crystal structures upon which first-principles (DFT) calculations were carried out in the original publication (DFT_calculations.tar)</li> <li>Python script to reproduce figures and data in the publication (data_process.zip)</li> </ul>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.