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16 results for “caste differentiation”
Cast Away in the Adriatic: Low Degree of Parallel Genetic Differentiation in Three-Spined Sticklebacks
<p>This repository incorporates data and scripts associated with the paper "Cast Away in the Adriatic: Low Degree of Parallel Genetic Divergence in Three-Spined Sticklebacks".</p> <p>Included in the repository are the following compressed folders: </p> <ul> <li>Moments_models&data.zip: two-population demographic models and SFS to run in <em>moments.</em></li> <li>Stairwayplot.zip: blueprint files for multiple mutation rates and results for StairwayPlots.</li> <li>TreeMix.zip: pipeline to infer population splits and mixture events from allele frequency data using TreeMix, including input files.</li> <li>VCF.zip: a filtered VCF file for all three-spined stickleback samples.</li> </ul> <p>The scripts for TreeMix and demographic analyses in <em>moments</em> are also available on <a href="https://github.com/carolindahms">GitHub</a>.</p>
Data from: A caste differentiation mutant elucidates the evolution of socially parasitic ants
<div> <div> <div> <div> <p>Most ant species have two distinct female castes – queens and workers – yet the developmental and genetic mechanisms that produce these alternative phenotypes remain poorly understood. Working with the clonal raider ant, <em>Ooceraea</em> <em>biroi</em>, we discovered a variant strain that expresses queen-like traits in individuals that would normally become workers. The variants show changes in morphology, behavior, and fitness that cause them to rely on workers in wild-type (WT) colonies for survival. Overall, they resemble the queens of many obligately parasitic ants that have evolutionarily lost the worker caste and live inside colonies of closely related hosts. <br><br>To understand the genetic basis of this variant strain, which we term the queen-like mutants (QLM), we re-analyzed published PacBio and Hi-C data (McKenzie and Kronauer 2018) using the Falcon pipeline. </p> </div> </div> </div> </div>
Data from: A caste differentiation mutant elucidates the evolution of socially parasitic ants
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Caste- and environment-associated differential expression of odorant receptors in pest ants
GEO Series GSE288141. Atta cephalotes; Camponotus floridanus; Atta sexdens. 49 samples. Type: Expression profiling by high throughput sequencing.
Differential gene expression underlying ovarian phenotype determination in honey bee, Apis mellifera, caste development
GEO Series GSE81118. Apis mellifera. 4 samples. Type: Expression profiling by array.
Single-cell transcriptomic analysis of honeybee brains identifies vitellogenin as caste differentiation-related factor
GEO Series GSE184507. Apis mellifera. 12 samples. Type: Expression profiling by high throughput sequencing.
Evolution and molecular basis of caste differentiation in bees
GEO Series GSE90751. Bombus terrestris audax. 20 samples. Type: Expression profiling by high throughput sequencing.
Gene expression underlying differential adult brain morphogenesis in honeybee castes
GEO Series GSE90156. Apis mellifera. 2 samples. Type: Expression profiling by array.
m6A methylome analysis reveals that m6A marks function in larval development and caste differentiation in honeybee (Apis mellifera)
GEO Series GSE137000. Apis mellifera. 20 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Gene expression underlying differential adult hind leg morphogenesis in honeybee castes [worker_queen_prepupae]
GEO Series GSE109551. Apis mellifera. 8 samples. Type: Expression profiling by array.
Gene expression underlying differential adult hind leg morphogenesis in honeybee castes [queen]
GEO Series GSE109547. Apis mellifera. 16 samples. Type: Expression profiling by array.
Gene expression underlying differential adult hind leg morphogenesis in honeybee castes [worker-queen_pupae]
GEO Series GSE109549. Apis mellifera. 8 samples. Type: Expression profiling by array.
Gene expression underlying differential adult hind leg morphogenesis in honeybee castes [worker-queen_larvae]
GEO Series GSE109550. Apis mellifera. 8 samples. Type: Expression profiling by array.
Gene expression underlying differential adult hind leg morphogenesis in honeybee castes
GEO Series GSE109552. Apis mellifera. 56 samples. Type: Expression profiling by array.
Gene expression underlying differential adult hind leg morphogenesis in honeybee castes [worker]
GEO Series GSE109548. Apis mellifera. 16 samples. Type: Expression profiling by array.
Small RNA expression and caste differentiation in the honeybee
GEO Series GSE52630. Apis mellifera. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.