Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
743
datasets available to search
ShareScore release 0.7.1
Dataset results
743 results for “clone”
Microbial Community Composition in Lakes - Taxonomic characteristics of the clones at North Temperate Lakes LTER 2000 - 2007
Microbial community composition is inferred by a combination of automated ribosomal intergenic spacer analysis (ARISA) and PCR-generated clone library analysis. Clone libraries include both the 16S rRNA gene and the 16S-23S ribosomal intergenic spacer fragment. Phylogenetic assignments for individual ARISA fragments are obtained by comparing the ARISA fragment length from each clone to all of the profiles stored in our database. We have analyzed over 3900 clones obtained from 41 lakes that represent the range of trophic types found in temperate landscapes. Querying by taxonomic characteristics of the clone allows the user to retrieve clone IDs, sequence data, and characteristics of the sequence (length, chimera status, accession number, taxonomic affiliation). The data can be filtered by clone ID, ARISA fragment length (raw or binned), and/or taxonomic characteristics (Phylum and Phylum-Class). The output includes links to individual clone records, which contain more detailed information about how the clone was generated (researcher, library ID, project ID, primer sets used, etc.).
CloneCorp: Cross-language clone detection dataset
<p>Data set of mobile apps and code examples to evaluate clone detection algorithms across languages (Kotlin, Swift, and Dart)</p>
Spider species composition in Gaylussacia baccata clones of varying sizes on Nantucket Island, Massachusetts
<p>This research was funded by grants from the Nantucket Land Bank and the Nantucket Land Council in 2008.<br> <br> Sandplain grassland and coastal heathland habitats intermingle to form a mosaic on Nantucket’s glacial outwash plain. Gaylussacia baccata (black huckleberry) is a dominant species in coastal heathland and forms large clonal monocultures. As these clones expand they replace grassland and reduce overall plant species diversity. In this pilot study I captured spiders in different size classes of G. baccata clones to determine if clone size affects spider species diversity. I also recorded differences in major plant species. Smaller clones had significantly higher numbers of two wolf spider species: Pardosa saxatilis and Schizocosa bilineata. Smaller clones tended to have a higher number of spider species than larger clones. Smaller clones had higher percentages of grass cover and less G. baccata coverage. I suggest that future work should produce separate species area curves for sandplain grassland and coastal heathland habitats to determine an optimum ratio of areas to maximize spider species richness.</p> <p>allSpiderData.csv<br> dataDictionary.csv - Data dictionary for all data files<br> mckenna-foster-report-2009.pdf - report describing project<br> vegetationData.csv</p>
Detection of Functionally Similar Code Clones: Data, Analysis Software, Benchmark
<p>We analysed 2,800 programs in Java and C for which we knew they are functionally similar. We checked if existing clone detection tools are able to find these functional similarities and classified the non-detected differences. We make all used data, the analysis software as well as the resulting benchmark available here.</p>
Three Datasets Cloned from GNNBenchmarkingDatasets
<p>This is only a cloned version for three datasets from GNNBenchmarkingDatasets in pytorch geometric library.</p>
Attack of the clones: population genetics reveals clonality of Colletotrichum lupini, the causal agent of lupin anthracnose
<p><em>Colletotrichum lupini</em>, causing lupin anthracnose, is one of the worst pathogens to lupin cultivation worldwide. Understanding its population structure and evolutionary potential is crucial to design successful disease management strategies. The objective of this study was to employ population genetics to investigate the diversity, evolutionary dynamics and molecular basis of host interaction of this notorious lupin pathogen. A collection of globally representative <em>C. lupini </em>isolates was genotyped through triple digest restriction-site associated DNA sequencing (3D-RADseq), resulting in a dataset of unparalleled resolution. Phylogenetic and structural analysis could distinguish four (I – IV) independent lineages. The strong population structure, low recombination and slow linkage decay strongly suggests that <em>C. lupini</em> reproduces clonally. Different morphologies and virulence patterns on white (<em>Lupinus albus</em>) and Andean lupin (<em>L. mutabilis</em>) were observed between and within clonal lineages. Isolates belonging to lineage II were shown to have a mini-chromosome which was also partly present in lineage III and IV, but not in lineage I isolates. Variation in the presence of this mini-chromosome could indicate a role in host interaction. All four lineages were present in the South American Andes region, which is concluded to be the center of origin of this species. Only members of lineage II have been found outside South America since the 1990s, indicating it as the current pandemic population. As a seed-borne pathogen, <em>C. lupini</em> has mainly spread through infected but symptomless seeds, stressing the importance of phytosanitary measures to prevent future outbreaks of strains that are yet confined to South America.</p>
Centripetal migration in Drosophila ovary IX: E-cadherin null clones pt2 & E-Cadherin germ cell RNAi pt 2
<p>Part of data supporting Figs 6, 7, S3, S6, S16 of “Two phases for centripetal migration of Drosophila melanogaster follicle cells: initial ingression followed by epithelial migration”<br> DOI: 10.1242/dev.200492</p> <p><strong>Data file descriptions:</strong></p> <ul> <li><strong>“FRT G13 mitotic clones” 14.6 GB</strong></li> </ul> <p> Fixed sample image data for clones of cells with E-Cadherin mutant or control mitotic clones</p> <ul> <li><strong>“GC RNAi flipout timelapse data pt2” 28.92GB</strong></li> </ul> <p> Timelapse image data for clones of germ cells with E-Cadherin knockdown</p> <ul> <li><strong> “Image analysis of ring canals-fixed G13 control” 6 KB</strong></li> </ul> <p> Evaluation of fixed samples for ring canal position just prior to stage 11, nurse cell dumping, using</p> <ul> <li><strong>“Immuno Shg LOF clonal analysis” 98 KB</strong></li> </ul> <p> Preliminary evaluation of sample image with clones of cells with E-Cadherin mutant or control mitotic clones</p> <ul> <li><strong>“Live GC RNAi clonal data Prelim Eval” 25.2 MB</strong></li> </ul> <p> Preliminary evaluation of germ cell E-Cadherin knockdown samples</p> <p> </p>
Centripetal migration in Drosophila ovary VIII: E-cadherin null mitotic clones pt1
<p>Data supporting Figs. 6, 7, S6 of “Two phases for centripetal migration of Drosophila melanogaster follicle cells: initial ingression followed by epithelial migration”</p> <p>DOI: 10.1242/dev.200492</p> <ul> <li><strong>“Immuno Shg LOF clonal analysis” 98 KB</strong></li> </ul> <p> Preliminary evaluation of sample image with clones of cells with E-Cadherin mutant or control mitotic clones</p> <ul> <li><strong>“Mixed control and shg mutant mitotic clones” 44.1Gb </strong></li> </ul> <p> Fixed sample image data for clones of cells with E-Cadherin mutant or control mitotic clones</p>
Centripetal migration in Drosophila ovary VII: E-cadherin RNAi clones in follicle cells timelapse
<p>Data supporting Figs. 5, S7, S8, S9, S10, S11, S12, S13, S14, S15 of “Two phases for centripetal migration of Drosophila melanogaster follicle cells: initial ingression followed by epithelial migration”</p> <p>DOI: 10.1242/dev.200492</p> <ul> <li><strong>“FC RNAi flipout timelapse data complete” 43.53GB</strong></li> </ul> <p> Timelapse image data for clones of follicle cells with E-Cadherin knockdown</p> <ul> <li><strong>“Live FC RNAi Clonal Data prelim evaluation” 22.1 MB</strong></li> </ul> <p> Preliminary evaluation of follicle cell E-Cadherin knockdown samples</p> <ul> <li><strong>“RNAi clone M2-M3-M5 quant” 12 KB</strong></li> </ul> <p> Quantitative data from specific milestones for clones of follicle cells with E-Cadherin knockdown</p>
Identification of grapevine clones via high-throughput amplicon sequencing: a proof-of-concept study VCF files
<p>VCF files used and cited in the article: Identification of grapevine clones via high-throughput amplicon sequencing: a proof-of-concept study</p>
Dataset paper "N2 use in perennial swards intercropped with young poplars, clone I-214 (Populus × euramericana (Dode) Guinier) in the Mediterranean area under rainfed conditions"
<p>These files contain the data produced within a 2-yr field experiment conducted in Pisa, Central Italy, to assess N dynamics in a young silvopastoral system (i.e., where two forage crops, sulla and ryegrass, were grown in intercropping with an alley row of poplar trees) compared to a pure pastoral system (i.e., where teh afore-mentioned forage crops were grown without trees).</p> <p>Specifically:</p> <p>- "15N_poplars_Ntransfer.csv" contains the data on N2-transfer from sulla to poplar trees</p> <p>- "Averaged cumulate values.csv" contains the data on aboveground biomass, N yield and N fixed of the forage crops, cumulated over the two years of experimentation;</p> <p>- "Poplars growth.csv" contains the data on plant height and trunk diameters ( at the foot and at 130 cm) collected on poplar plants at different dates (at plantation time and at the end of each experimental year);</p> <p>- "Root_N_Nfix.csv" contains the data on delta 15N, %N derived from fixation and N concentration in poplar tree roots sampled at the end of each experimental year;</p> <p>- "Seasonal Data_AGB_N_Nfix.csv" contains the data on aboveground biomass, N yield, delta 15N, %N derived from fixation and N concentration and N fixed of forage species observed at each sampling time (mowing date) within the two experimental years;</p> <p>- "Soil_N_only SIPAST.csv" contains the data of soil total Nitrogen and nitric Nitrogen observed only in the silvopastoral system at different positions on the field;</p> <p>-"Soil_N.csv" contains the data of soil total Nitrogen and nitric Nitrogen observed in the two cropping systems at different positions on the field.</p>
Artifact for the ESEC/FSE 2020 Paper: An Empirical Analysis of the Costs of Clone- and Platform-Oriented Software Reuse
<p>This dataset comprises the supplementary material for the paper "An Empirical Analysis of the Costs of Clone- and Platform-Oriented Software Reuse" by Jacob Krüger and Thorsten Berger, accepted at ESEC/FSE 2020.</p> <p>The dataset comprises:</p> <ul> <li>bibFilesManualSearch: The bib files for all venues analyzed, as provided by DBLP (cf. Section 2.4)</li> <li>dataFromPapers: The pdf file documents all included studies and the data extracted from these (cf. Section 2.4, 3.2, and 3.3)</li> <li>interviewGuide: The guide/questions for our semi-structured intreviews in the cost assessment phase (cf. Section 2.3)</li> <li>anonymizedInterviewSummary: The anonymized and summarized data from the cost-assessment interviews (cf. Section 3.2 and 3.3)</li> <li>R: Our R script for creating our figures and the corresponding csv files</li> </ul> <p> </p>
Replication package for "To What Extent do Deep Learning-based Code Recommenders Generate Predictions by Cloning Code from the Training Set?
<p>Replication package for "To What Extent do Deep Learning-based Code Recommenders Generate Predictions by Cloning Code from the Training Set?"</p>
Figure 2 in Evaluation of some nutritional quality criteria of seventeen Moroccan dates varieties and clones, fruits of date palm (Phoenix dactylifera L.)
Figure 2. Representation of dates varieties and clones according to their quality characteristics. (a) Representation of variables according to PCA. (b) Segregation of 17 dates varieties and clones according to their quality attributes.
Fig. 2 in Molecular cloning of heat shock protein gene HSP90 and effects of abamectin and double-stranded RNA on its expression in Panonychus citri (Trombidiformes: Tetranychidae)
Fig. 2. Alignment of HSP90 amino acid sequence of P. citri McGregor and its homologus amino acid sequences from other species (Frankliniella occidentalis, Trialeurodes vaporariorum, Pteromalus puparum, Tetranychus cinabarinus).
Fig. 2 in Susceptibility of Eucalyptus spp. (Myrtales: Myrtaceae) and clones to Leptocybe invasa (Hymenoptera: Eulophidae) in Paraná, Brazil
Fig. 2. Percentage of leaves and stems with galls caused by Leptocybe invasa in plants in each stratum (lower, middle, upper) of approx. 2-m-tall Eucalyptus spp. and clones at Umuarama, PR, Brazil, in 2013.
Questionnaire, R Scripts and Response Data Set of the Survey on Functionally Similar Code Clones
<p>In 2017, we conducted an open online survey regarding functionally similar code clones with practitioners. We make the used questionnaire, the data from the response to the questionnaire and our used R script for the analysis openly available.</p>
Design and cloning of a pair of split-GFP constructs to examine one of the split-sites for SCN1A
<p>Design and cloning of split-GFP constructs to investigate a potential split-sites for SCN1A fragments complementation.</p>
Figure 1 in Cloning and characterization of ubiquitin ribosome fusion gene RpS27a, a deltamethrin-resistance-associated gene from diamondback moth (Plutella xylostella L.)
Figure 1. The nucleotide and deduced amino acid sequences of the P. xylostella RpS27a gene coding region. The deduced amino acid sequence is presented below the nucleotide sequence in a single letter. The nuclear localization signal sequence is shaded. The initial and termination codon are underlined. The stop codon is denoted with an asterisk.
Figure 5. Phylogenetic relationship between P. xylostella RpS27a in Cloning and characterization of ubiquitin ribosome fusion gene RpS27a, a deltamethrin-resistance-associated gene from diamondback moth (Plutella xylostella L.)
Figure 5. Phylogenetic relationship between P. xylostella RpS27a and some other species. Corresponding GenBank accession numbers are: M. sexta: ACY95367.1; P. dardanus: CAH04128.1; Bombyx mori: NP_001091826.1; P. polytes: BAM18943.1; P. xuthus: BAM17728.1; S. frugiperda: AAL62473.1; D. plexippus: EHJ77179.1; A. yamamai: BAD05031.1; P. xylostella: JX437934; T. rubida: AER92457.1; D. melanogaster: NP_476778.1; A. aegypti: AAS79344.1; C. quinquefasciatus: XP_001844485.1.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.