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44 results for “comparative mapping”
Oligonucleotide probes used for comparative mapping in lupin species
<p>The supplementary list of oligonucleotide probes generated in Chorus software. Filtered probes were used in oligo-FISH comparative mapping of lupin species. Detailed description provided in the article: 'The puzzling fate of a lupin chromosome revealed by reciprocal oligo-FISH and BAC-FISH mapping'.</p>
Data from: Comparing methods for mapping global parasite diversity
Aim Parasites are a major component of global ecosystems, yet spatial variation in parasite diversity is poorly known, largely because their occurrence data are limited and thus difficult to interpret. Using a recently compiled database of parasite occurrences, we compare different models which we use to infer parasite geographic ranges and parasite species richness across the globe. Innovation To date, most studies exploring spatial patterns of parasite diversity assumed, with little validation, that the geographic range of a parasite species can be represented by the collective geographic range of its host species. Our study compares this assumption with a suite of other methods to infer parasite distribution from parasite occurrence data (e.g. based on data density, ecoregions and climatic conditions). We highlight diversity hotspots identified by the various methods and compare the effects of sampling intensities in different regions, a crucial factor of observed parasite diversity. Main conclusions The type of model used to infer parasite distributions affects estimates of both total species richness and spatial patterns of hotspots of parasite richness. Overall, the models based on reported occurrences share similar areas of high parasite richness that tends to be biased towards areas of high sampling effort. In contrast, the model based on host distributions showed hotspots of parasite diversity which are biased towards areas of high host species richness. Accounting for sampling effort could only help to reconcile the outcome from the different models in some regions. Further, the non-saturated species accumulation curves even for the best studied regions of the world such as Europe and North America as a call for further sampling effort and development of effective analytic tools that can provide robust accounts of global parasite diversity.
Supplementary files: A Comparative Study of Active Rock Glaciers Mapped from Geomorphic- and Kinematic-Based Approaches in Daxue Shan, Southeast Tibetan Plateau
<p>Supplement of "A Comparative Study of Active Rock Glaciers Mapped from Geomorphic- and Kinematic-Based Approaches in Daxue Shan, Southeast Tibetan Plateau". The supplementary files provide the outlines and parameters of the rock glaciers inventoried by InSAR-assist kinematic-based approach in the Daxue Shan, Southeast Tibet Plateau. </p> <p>Based on the Sentinel-1A ascending SAR images acquired between 2015 and 2019, we derived a five-year-long LOS mean velocity map of the study area. We then compiled a rock glacier inventory by synergistically interpreting the InSAR-derived surface displacements and geomorphic features based on Google Earth images.</p>
Data from: Comparing methods for mapping global parasite diversity
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Supplementary material 1 from: Scacchetti P, Pansonato-Alves J, Utsunomia R, Oliveira C, Foresti F (2011) Karyotypic diversity in four species of the genus Gymnotus Linnaeus, 1758 (Teleostei, Gymnotiformes, Gymnotidae): physical mapping of ribosomal genes and telomeric sequences. Comparative Cytogenetics 5(3): 223-235. https://doi.org/10.3897/compcytogen.v5i3.1375
Nexus file of aligned COI and COII nucleotide sequences.
Subspecies and Distribution. T.n.napuF.Cuvier,1822—SMyanmar,Thai/MalayPeninsula,islandsoffWMalayPeninsula(Langkawi&Pangkor),Borneo,SSumatra,BangkaI,islandsoffBorneo(Laut&Serasan). T.n.bangue:Chasen&Kloss,1931—BanggiIandBalembanganI,offNBorneo. T.n.bunguranensisMiller,1901—NatunaIs(=Bunguran),oftWBorneo. T.n.neubronneriSody,1931—NSumatra. T.n.nmiasisLyon,1916—NiasI,offWSumatra. T.n.rufulusMiller,1900—TiomanI,offEMalayPeninsula,RiauandLinggaArchipelagos. T. n. terutus Thomas & Wroughton, 1909 — Terutau I, off W Malay Peninsula. The species was recently reconfirmed for Singapore. Maps that include Vietnam, Cambodia, and Laos in the distribution range are based on the earlier assumption that 7. versicolor was a subspecies of 1. napu. Subsequent studies have indicated that 7. versicolor is a distinct species, and that the range of 1. napu therefore does not extend into Cambodia, Laos, and Vietnam. The northern limit on the Thai-Malay peninsula is not well defined. Specimens of 1. napu have been collected from as far north as Bankachon in southern Myanmar (10° 08" N), but despite fairly intensive camera-trapping in Kui Buri National Park, Thailand (12° N), 7. napu has not been photographed there. At the northern margin ofits range, it is generally rare. It has been reported, for example, that during the flooding of the Chiew Larn Reservoir (Surat Thani Province; about 9° N, 98° 45' E), only six 7. napu were rescued compared with 172 71. kanchil. This area is the transition zone from wetter evergreen forest to drier deciduous types, and it might be that 7° napu is not well adapted to the drier forest types towards the northern limit ofits range. There are unconfirmed reports of the species on Java, where it may have been confused with one of the two color morphs of 7. javanicus. As explained in the Taxonomy section, the subspecific status of the populations of several islands remains unclear. in Tragulidae
Subspecies and Distribution. T.n.napuF.Cuvier,1822—SMyanmar,Thai/MalayPeninsula,islandsoffWMalayPeninsula(Langkawi&Pangkor),Borneo,SSumatra,BangkaI,islandsoffBorneo(Laut&Serasan). T.n.bangue:Chasen&Kloss,1931—BanggiIandBalembanganI,offNBorneo. T.n.bunguranensisMiller,1901—NatunaIs(=Bunguran),oftWBorneo. T.n.neubronneriSody,1931—NSumatra. T.n.nmiasisLyon,1916—NiasI,offWSumatra. T.n.rufulusMiller,1900—TiomanI,offEMalayPeninsula,RiauandLinggaArchipelagos. T. n. terutus Thomas & Wroughton, 1909 — Terutau I, off W Malay Peninsula. The species was recently reconfirmed for Singapore. Maps that include Vietnam, Cambodia, and Laos in the distribution range are based on the earlier assumption that 7. versicolor was a subspecies of 1. napu. Subsequent studies have indicated that 7. versicolor is a distinct species, and that the range of 1. napu therefore does not extend into Cambodia, Laos, and Vietnam. The northern limit on the Thai-Malay peninsula is not well defined. Specimens of 1. napu have been collected from as far north as Bankachon in southern Myanmar (10° 08" N), but despite fairly intensive camera-trapping in Kui Buri National Park, Thailand (12° N), 7. napu has not been photographed there. At the northern margin ofits range, it is generally rare. It has been reported, for example, that during the flooding of the Chiew Larn Reservoir (Surat Thani Province; about 9° N, 98° 45' E), only six 7. napu were rescued compared with 172 71. kanchil. This area is the transition zone from wetter evergreen forest to drier deciduous types, and it might be that 7° napu is not well adapted to the drier forest types towards the northern limit ofits range. There are unconfirmed reports of the species on Java, where it may have been confused with one of the two color morphs of 7. javanicus. As explained in the Taxonomy section, the subspecific status of the populations of several islands remains unclear.
Comparative Sensory Mapping of Regional Anesthesia Techniques in Breast Cancer Surgery
ClinicalTrials.gov study NCT06911892. IPD Sharing: UNDECIDED. Countries: 1. Publications: 3.
The Added Value of Three-dimensional Electroanatomic Mapping For Accurate Delivery Of Pulsed Field Ablation In The Pulmonary Veins Compared To Pulsed Field Ablation With Fluoroscopy And/Or Intracardia
ClinicalTrials.gov study NCT07014423. IPD Sharing: Not stated. Countries: 1. Publications: 18.
Supplementary material 1 from: Geneletti D, Adem Esmail B, Cortinovis C, Arany I, Balzan M, van Beukering P, Bicking S, Borges PA, Borisova B, Broekx S, Burkhard B, Gil A, Inghe O, Kopperoinen L, Kruse M, Liekens I, Lowicki D, Mizgajski A, Mulder S, Nedkov S, Ostergard H, Picanço A, Ruskule A, Santos-Martín F, Sieber IM, Svensson J, Vačkářů D, Veidemane K (2020) Ecosystem services mapping and assessment for policy- and decision-making: Lessons learned from a comparative analysis of European case studies. One Ecosystem 5: e53111. https://doi.org/10.3897/oneeco.5.e53111
An overview of the assessment of ecosystem condition in the selected case studies.
Data from: Comparative linkage maps suggest that fission, not polyploidy, underlies near-doubling of chromosome number within monkeyflowers (Mimulus; Phrymaceae)
Changes in chromosome number and structure are important contributors to adaptation, speciation, and macroevolution. In flowering plants, polyploidy and subsequent reductions in chromosome number by fusion are major sources of chromosomal evolution, but chromosome number increase by fission has been relatively unexplored. Here, we use comparative linkage mapping with gene-based markers to reconstruct chromosomal synteny within the model flowering plant genus Mimulus (monkeyflowers). Two sections of the genus with haploid numbers {greater than or equal to} 14 have been inferred to be relatively recent polyploids because they are phylogenetically nested within numerous taxa with low base numbers (n = 8-10). We combined multiple datasets to build integrated genetic maps of the M. guttatus species complex (section Simiolus, n = 14) and the M. lewisii group (section Erythranthe; n = 8), and then aligned the two integrated maps using >100 shared markers. We observed strong segmental synteny between M. lewisii and M. guttatus maps, with essentially 1-to-1 correspondence across each of 16 chromosomal blocks. Assuming that the M. lewisii (and widespread) base number of 8 is ancestral, reconstruction of 14 M. guttatus chromosomes requires at least eight fission events (likely shared by Simiolus and sister section Paradanthus [n=16]), plus two fusion events. This apparent burst of fission in the yellow monkeyflower lineages raises new questions about mechanisms and consequences of chromosomal fission in plants. Our comparative maps also provide insight into the origins of a chromosome exhibiting centromere-associated female meiotic drive and create a framework for transferring M. guttatus genome resources across the entire genus.
Fig. 3 Likelihood mapping and neighbor net for 16S. For further explanations, see Fig. 2 in Comparative phylogeography of the centipedes Cryptops pictus and C. niuensis (Chilopoda) in New Caledonia, Fiji and Vanuatu
Fig. 3 Likelihood mapping and neighbor net for 16S. For further explanations, see Fig. 2
Data from: Comparative linkage maps suggest that fission, not polyploidy, underlies near-doubling of chromosome number within monkeyflowers (Mimulus; Phrymaceae)
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Comparative Multi-omic Mapping of Human Pancreatic Islet Endoplasmic Reticulum and Cytokine Stress Responses Provide Insights into Type 2 Diabetes Genetics [ATAC-seq]
GEO Series GSE251910. Homo sapiens. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A dynamic co-expression map of early inflorescence development in Setaria viridis provides a resource for gene discovery and comparative genomics
GEO Series GSE118673. Setaria viridis. 23 samples. Type: Expression profiling by high throughput sequencing.
Comparative Multi-omic Mapping of Human Pancreatic Islet Endoplasmic Reticulum and Cytokine Stress Responses Provide Insights into Type 2 Diabetes Genetics [scRNA-seq]
GEO Series GSE251912. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Comparing Reference-Based RNA-Seq Mapping Methods for Non-Human Primate Data
GEO Series GSE57485. Papio cynocephalus. 12 samples. Type: Expression profiling by high throughput sequencing.
Comparative profiling of chromatin state maps and transcription factor occupancy during human fetal and adult erythropoiesis
GEO Series GSE36985. Homo sapiens. 37 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of H3K4me3 deposition comparing Ctrl and Fatty acid oxidation restricted (Cpt1b-deficiency) adult cardiomyocyte
GEO Series GSE172412. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Comparative Multi-omic Mapping of Human Pancreatic Islet Endoplasmic Reticulum and Cytokine Stress Responses Provide Insights into Type 2 Diabetes Genetics [RNA-seq]
GEO Series GSE251911. Homo sapiens. 58 samples. Type: Expression profiling by high throughput sequencing.
High-resolution map of copy number variations in motor cortex of Control and Sporadic Amyotrphic Lateral Sclerosis patients by using a customized exon-centric comparative genomic hybridization array.
GEO Series GSE107375. Homo sapiens. 40 samples. Type: Genome variation profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.