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92 results for “complexity of infection”
Fig. 3 in Communities Of Ditylenchus Destructor Satellite Species Of Nematodes In Infected Potato Tubers: Species Composition Of Phytonematode Complex And The Structure Of Their Infracommunities
Fig. 3. The dynamics of the ratio of the total number of various trophoecological group nematodes during the disease of potato tubers caused by D. destructor.
Fig. 1 in Communities Of Ditylenchus Destructor Satellite Species Of Nematodes In Infected Potato Tubers: Species Composition Of Phytonematode Complex And The Structure Of Their Infracommunities
Fig. 1. Ditylenchus destructor (Thorne, 1945) potato nematode: A — female; B — head end of the female; C — spicules; D — male; E — head end of the male; F, G — lateral field by the Thorne, 1945.
Fig. 5 in Communities Of Ditylenchus Destructor Satellite Species Of Nematodes In Infected Potato Tubers: Species Composition Of Phytonematode Complex And The Structure Of Their Infracommunities
Fig. 5. Occurrence of various species of phytonematodes during successive stages of the pathological process.
Fig. 3 in Haemocystidium spp., a species complex infecting ancient aquatic turtles of the family Podocnemididae: First report of these parasites in Podocnemis vogli from the Orinoquia
Fig. 3. (A) A Bayesian phylogenetic analysis of reptile haemosporidian parasites based on 62 partial sequences of cytb gene sequences corresponding to a bigger fragment of cytb (707 bp excluding gaps). Leucocytozoon genus was used as outgroup. In parenthesis are GenBank sequence accession number, isolate name, and turtle species name respectively. Branch color indicates the parasites genus: Blue, Plasmodium sp.; light green, Haemocystidium spp. infecting lizards and snakes; dark green, Haemocystidium sp. Infecting turtles; black, Haemoproteus and Leucocytozoon spp. (B–C) Estimates of evolutionary divergence between/within Haemocystidium spp. Genetic distances were estimated using the bigger fragment of cytb (707 bp excluding gaps). The number of base substitutions per site between sequences are shown in black and the standard error estimate(s) are shown above the diagonal in blue. Evolutionary divergence between/within Haemocystidium pacayae and Haemocystidium sp. (GERPH: PC005) are shown in bold and red respectively. Sequences previously identified as Hae. pacayae (KF049495 and KF049507) are likely Hae. (Simondia) sp. (group 2). (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 4 in Haemocystidium spp., a species complex infecting ancient aquatic turtles of the family Podocnemididae: First report of these parasites in Podocnemis vogli from the Orinoquia
Fig. 4. Haemocystidium (Simondia) sp. (GERPH: PC005) identified in Podocnemis vogli (A–H). (A–F) Young gametocytes, (E) coinfection with a gamont of Haemogregarina, (G) microgametocyte, and (H) macrogametocyte. Haemocystidium (S.) pacayae (GERPH: PC004-PC006) identified in P. vogli (I–J). (I) Young gametocyte, (K) microgametocyte, and (L) macrogametocyte. Bold black arrow: hemozoin granules; white arrow: parasitophorous vacuole; fine black arrow: vacuole. Giemsa stain, Scale bar: 10 μm.
Fig. 2 in Haemocystidium spp., a species complex infecting ancient aquatic turtles of the family Podocnemididae: First report of these parasites in Podocnemis vogli from the Orinoquia
Fig. 2. Species and sampling locations for turtles analyzed in the study. Turtle species present in these localities are shown.
Fig. 1 in Haemocystidium spp., a species complex infecting ancient aquatic turtles of the family Podocnemididae: First report of these parasites in Podocnemis vogli from the Orinoquia
Fig. 1. Timeline of the taxonomic classification of the genus Haemocystidium. Relevant events in the description of this genus.
Spatial Mapping and Host Linking of Mobile Genetic Elements in Complex Microbiomes - Visualizing phage infection
<p>We staged infections at four multiplicities of infection (MOI 0, 0.01, 0.1, and 1), and took snapshots every ten minutes over a 40-minute period. We designed FISH probes targeting the non-coding strand of the <em>gp34</em> gene, which encodes a tail fiber protein and quantified cells with 5 or more MGE spots, less than 5 spots, and no spots</p>
Enterobacter cloacae complex (E. bugandensis species, ST599) strain associated with a catheter-related bloodstream infection (CRBSI) (genome assembly and annotation dataset)
<p>This dataset includes the assembled contigs (.fasta and .gbk files), the nucleotide sequences of the prediction transcripts (.ffn files) and the respective amino acid sequences of the translated CDS sequences (.faa files) of a <em><strong>Enterobacter cloacae </strong></em><strong>complex</strong><em><strong> (E. bugandensis </strong></em><strong>species</strong><em><strong>, </strong></em><strong>ST599</strong><em><strong>) </strong></em>strain associated with a catheter-related bloodstream infection (CRBSI) (genome anotation was performed using Prokka v1.14.5; https://github.com/tseemann/prokka)</p> <p>The raw sequence reads were deposited in the European Nucleotide Archive (ENA) (BioProject PRJEB45360; Run Accession: ERR10044433).</p>
Drought, infection complexity (COI), and prevalence of Plasmodium mexicanum
<p>This data and R code were used for the research reported in the manuscript listed below, which was being reviewed by a journal at the time this data set was published.</p> <ul> <li>Title: Drought correlates with reduced infection complexity and possibly prevalence in a decades-long study of the lizard malaria parasite Plasmodium mexicanum</li> <li>Authors: Allison Neal, Joshua Sassi, Anne Vardo-Zalik</li> </ul> <p>There are 6 files:</p> <ol> <li><strong>HOPDroughtAnalysis20201221.R</strong>- an R script; the main data analysis file</li> <li><strong>DroughtAnalysisDataFull.csv</strong>- a data file containing data on all of the lizards collected at the University of California's Hopland Research and Extension Center from 1978 to 2016. This file does NOT contain any information on drought, but HOPDroughtAnalysis20201221.R will import data from both this file and the droughtMonitorDataUkiah.csv and align them. Alternatively, use DroughtData_AsAnalyzed.csv (see below). Metadata are provided in a separate file (see below).</li> <li><strong>DroughtData_AsAnalyzed.csv</strong>- this data set combines data from DroughtAnalysisDataFull.csv and droughtMonitorDataUkiah.csv. It contains only the lizards that were analyzed for this paper. This file may be useful for repeating the data analysis outside of R, but does not allow for easy adjustment of what data were excluded or how drought measures were aligned with prevalence and COI measures.</li> <li><strong>DroughtAnalysisMetadata.csv</strong>- a description of the data in DroughtAnalysisDataFull.csv and DroughtData_AsAnalyzed.csv.</li> <li><strong>droughtMonitorDataUkiah.csv</strong>- a data file containing a summary of data from the US Drought Monitor. The original data were downloaded here: <a href="https://droughtmonitor.unl.edu/DmData/DataDownload.aspx">https://droughtmonitor.unl.edu/DmData/DataDownload.aspx</a>. Week is reported as YYYYMMDD. The original data, as downloaded, were recorded as the percentage of Ukiah (Mendocino County, California) that was in each of six categories: no drought or drought of severity D0 (abnormally dry) to D4 (exceptional drought). We converted this data to a single number by converting the categories into a numerical scale (0 = no drought, 1 = D0, etc.) and calculating a weighted average of the drought severity for the county for each week. These averages are recorded in this file.</li> <li><strong>HRECRainfall.csv</strong>- a data file containing rainfall data from the Hopland Research and Extension Center (<a href="https://hrec.ucanr.edu/">https://hrec.ucanr.edu/</a>), posted with permission from John Bailey (HREC director, 2022). It reports the monthly rainfall at HREC from 1952 to 2017.</li> </ol>
Study to Evaluate the Efficacy and Safety of Intravenous Sulbactam-ETX2514 in the Treatment of Patients With Infections Caused by Acinetobacter Baumannii-calcoaceticus Complex
ClinicalTrials.gov study NCT03894046. IPD Sharing: Not stated. Countries: 17. Publications: 1.
Tobramycin Inhalation Powder (TIP) in Cystic Fibrosis Patients Infected With Burkholderia Cepacia Complex
ClinicalTrials.gov study NCT02212587. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Validation of Patient Reported Outcome Measures in Participants With Nontuberculous Mycobacterial Lung Infection Caused by Mycobacterium Avium Complex
ClinicalTrials.gov study NCT04677543. IPD Sharing: NO. Countries: 12. Publications: 1.
Assessing the sociodemographic factors associated with Mycobacterium tuberculosis complex infection among free-ranging long-tailed Macaques in Thailand
Open the record for dataset details and reuse information.
FIGURE 6. Infected Ophiocordyceps camponoti-atricipis showing initial development. a in Unravelling the diversity behind the Ophiocordyceps unilateralis (Ophiocordycipitaceae) complex: Three new species of zombie-ant fungi from the Brazilian Amazon
FIGURE 6. Infected Ophiocordyceps camponoti-atricipis showing initial development. a) Day 1 (24th March 2011): Ant attaching to the leaf and dying a few hours later; b) Day 3: Cottony white fungal mycelium arises from ant sutures and joints, the stroma emerges from behind the ant head; c) Day 5: the covering mycelium becomes light brown and the pink-tipped stroma continues to grow. In 2–3 weeks, the ascoma forms and matures over time depending on climatic conditions. Images: João Araújo.
Data from: Pathogen burden, co-infection and major histocompatibility complex variability in the European badger (Meles meles)
Pathogen-mediated selection is thought to maintain the extreme diversity in the major histocompatibility complex (MHC) genes, operating through the heterozygote advantage, rare-allele advantage and fluctuating selection mechanisms. Heterozygote advantage (i.e., recognizing and binding a wider range of antigens than homozygotes) is expected to be more detectable when multiple pathogens are considered simultaneously. Here, we test if MHC diversity in a wild population of European badgers (Meles meles) is driven by pathogen-mediated selection. We examined individual prevalence (infected or not), infection intensity and co-infection of 13 pathogens from a range of taxa, and examined their relationships with MHC class I and class II variability. This population has a variable, but relatively low, number of MHC alleles and is infected by a variety of naturally-occurring pathogens, making it very suitable for the investigation of MHC-pathogen relationships. We found associations between pathogen infections and specific MHC haplotypes and alleles. Co-infection status was not correlated with MHC heterozygosity, but there was evidence of heterozygote advantage against individual pathogen infections. This suggests that rare-allele advantages and/or fluctuating selection, as well as heterozygote advantage are likely to be the selective forces shaping MHC diversity in this species. We show stronger evidence for MHC-associations with infection intensity than for prevalence, and conclude that examining both pathogen prevalence and infection intensity is important. Moreover, examination of a large number and diversity of pathogens, and both MHC class I and II genes (which have different functions), provide an improved understanding of the mechanisms driving MHC diversity.
The Safety and Effectiveness of Clarithromycin in the Prevention of Mycobacterium Avium Complex (MAC) Infection in HIV-Infected Patients
ClinicalTrials.gov study NCT00002336. IPD Sharing: Not stated. Countries: 1. Publications: 1.
A Phase II Safety and Efficacy Study of Clarithromycin in the Treatment of Disseminated M. Avium Complex (MAC) Infections in Patients With AIDS
ClinicalTrials.gov study NCT00000644. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Study to Evaluate ALIS (Amikacin Liposome Inhalation Suspension) in Participants With Nontuberculous Mycobacterial Lung Infection Caused by Mycobacterium Avium Complex
ClinicalTrials.gov study NCT04677569. IPD Sharing: NO. Countries: 23. Publications: 0.
Randomized Comparative Study of Fluconazole Versus Clotrimazole Troches in the Prevention of Serious Fungal Infection in Patients With AIDS or Advanced AIDS-Related Complex. (A Nested Study of ACTG 08
ClinicalTrials.gov study NCT00000676. IPD Sharing: Not stated. Countries: 2. Publications: 3.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.