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10 results for “compression index”
Compressed COBS indexes (XZ) - HQ 661k - Part 1
<p><strong>Compressed COBS indexes (XZ) - HQ 661k - v1</strong> – <a href="https://doi.org/10.5281/zenodo.6845083">part1</a>, <a href="https://doi.org/10.5281/zenodo.6849657">part2</a></p> <p>Part 1 of the compressed COBS indexes built from the high-quality assemblies of the 661k dataset. More information can be found on <a href="https://brinda.eu/mof/">https://brinda.eu/mof/</a>.</p> <p><strong>Citation:</strong></p> <blockquote> <p>K. Břinda, L. Lima, S. Pignotti, N. Quinones-Olvera, K. Salikhov, R. Chikhi, G. Kucherov, Z. Iqbal, and M. Baym, <a href="https://doi.org/10.1101/2023.04.15.536996"><strong>Efficient and robust search of microbial genomes via phylogenetic compression</strong></a>, <em>bioRxiv</em> 2023.04.15.536996, 2023. <strong><a href="https://doi.org/10.1101/2023.04.15.536996">https://doi.org/10.1101/2023.04.15.536996</a></strong></p> </blockquote>
Compressed COBS indexes (XZ) - HQ 661k - Part 2
<p><strong>Compressed COBS indexes (XZ) - HQ 661k - v1</strong> – <a href="https://doi.org/10.5281/zenodo.6845083">part1</a>, <a href="https://doi.org/10.5281/zenodo.6849657">part2</a></p> <p>Part 2 of the compressed COBS indexes built from the high-quality assemblies of the 661k dataset. More information can be found on <a href="https://brinda.eu/mof/">https://brinda.eu/mof/</a>.</p> <p><strong>Citation:</strong></p> <blockquote> <p>K. Břinda, L. Lima, S. Pignotti, N. Quinones-Olvera, K. Salikhov, R. Chikhi, G. Kucherov, Z. Iqbal, and M. Baym, <a href="https://doi.org/10.1101/2023.04.15.536996"><strong>Efficient and robust search of microbial genomes via phylogenetic compression</strong></a>, <em>bioRxiv</em> 2023.04.15.536996, 2023. <strong><a href="https://doi.org/10.1101/2023.04.15.536996">https://doi.org/10.1101/2023.04.15.536996</a></strong></p> </blockquote>
Compressed COBS indexes (XZ) - Full 661k - Part 2
<p><strong>Compressed COBS indexes (XZ) - Full 661k - v0.0.2</strong> – <a href="https://doi.org/10.5281/zenodo.7313926">part1</a>, <a href="https://doi.org/10.5281/zenodo.7313942">part2</a>, <a href="https://doi.org/10.5281/zenodo.7315499">part3</a></p> <p>Part 2 of the compressed COBS indexes built from all assemblies of the 661k dataset. More information can be found on <a href="https://brinda.eu/mof/">https://brinda.eu/mof/</a>.</p> <p><strong>Citation:</strong></p> <blockquote> <p>K. Břinda, L. Lima, S. Pignotti, N. Quinones-Olvera, K. Salikhov, R. Chikhi, G. Kucherov, Z. Iqbal, and M. Baym, <a href="https://doi.org/10.1101/2023.04.15.536996"><strong>Efficient and robust search of microbial genomes via phylogenetic compression</strong></a>, <em>bioRxiv</em> 2023.04.15.536996, 2023. <strong><a href="https://doi.org/10.1101/2023.04.15.536996">https://doi.org/10.1101/2023.04.15.536996</a></strong></p> </blockquote>
Compressed COBS indexes (XZ) - Full 661k - Part 1
<p><strong>Compressed COBS indexes (XZ) - Full 661k - v0.0.2</strong> – <a href="https://doi.org/10.5281/zenodo.7313926">part1</a>, <a href="https://doi.org/10.5281/zenodo.7313942">part2</a>, <a href="https://doi.org/10.5281/zenodo.7315499">part3</a></p> <p>Part 1 of the compressed COBS indexes built from all assemblies of the 661k dataset. More information can be found on <a href="https://brinda.eu/mof/">https://brinda.eu/mof/</a>.</p> <p><strong>Citation:</strong></p> <blockquote> <p>K. Břinda, L. Lima, S. Pignotti, N. Quinones-Olvera, K. Salikhov, R. Chikhi, G. Kucherov, Z. Iqbal, and M. Baym, <a href="https://doi.org/10.1101/2023.04.15.536996"><strong>Efficient and robust search of microbial genomes via phylogenetic compression</strong></a>, <em>bioRxiv</em> 2023.04.15.536996, 2023. <strong><a href="https://doi.org/10.1101/2023.04.15.536996">https://doi.org/10.1101/2023.04.15.536996</a></strong></p> </blockquote>
Compressed COBS indexes (XZ) - Full 661k - Part 3
<p><strong>Compressed COBS indexes (XZ) - Full 661k - v0.0.2</strong> – <a href="https://doi.org/10.5281/zenodo.7313926">part1</a>, <a href="https://doi.org/10.5281/zenodo.7313942">part2</a>, <a href="https://doi.org/10.5281/zenodo.7315499">part3</a></p> <p>Part 3 of the compressed COBS indexes built from all assemblies of the 661k dataset. More information can be found on <a href="https://brinda.eu/mof/">https://brinda.eu/mof/</a>.</p> <p><strong>Citation:</strong></p> <blockquote> <p>K. Břinda, L. Lima, S. Pignotti, N. Quinones-Olvera, K. Salikhov, R. Chikhi, G. Kucherov, Z. Iqbal, and M. Baym, <a href="https://doi.org/10.1101/2023.04.15.536996"><strong>Efficient and robust search of microbial genomes via phylogenetic compression</strong></a>, <em>bioRxiv</em> 2023.04.15.536996, 2023. <strong><a href="https://doi.org/10.1101/2023.04.15.536996">https://doi.org/10.1101/2023.04.15.536996</a></strong></p> </blockquote>
Phylogenetically compressed meta-Fulgor indexes - HQ 661k - Part 4
<p>Part 4 of the phylogenetically compressed meta-Fulgor indexes built from the HQ 661k dataset. </p>
Phylogenetically compressed meta-Fulgor indexes - HQ 661k - Part 3
<p>Part 3 of the phylogenetically compressed meta-Fulgor indexes built from the HQ 661k dataset. </p>
Phylogenetically compressed meta-Fulgor indexes - HQ 661k - Part 2
<p>Part 2 of the phylogenetically compressed meta-Fulgor indexes built from the HQ 661k dataset. </p>
Phylogenetically compressed meta-Fulgor indexes - HQ 661k - Part 1
<p>Part 1 of the phylogenetically compressed meta-Fulgor indexes built from the HQ 661k dataset. </p>
Raw results of all tests (tensile strength in bending, compression, modified Chapelle and consistency index).
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